46 research outputs found

    Diversity and distribution of co-infecting Botryosphaeriaceae from Eucalyptus grandis and Syzygium cordatum in South Africa

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    Species in the fungal family Botryosphaeriaceae are latent pathogens on woody trees. These fungi often have a wide host range, which can include native and introduced hosts in an area. Multi-locus DNA sequence identification on a recent collection of Botryosphaeriaceae from Eucalyptus grandis and Syzygium cordatum trees in South Africa revealed cross-infectivity of several species, novel host associations and new country reports. Neofusicoccum eucalyptorum, Neofusicoccum kwambonambiense, Neofusicoccum parvum, Neofusicoccum australe and Lasiodiplodia pseudotheobromae were identified from both tree species, with L. pseudotheobromae and N. eucalyptorum isolated for the first time from S. cordatum, similar to N. kwambonambiense from Eucalyptus. This also represents the first report of L. pseudotheobromae from South Africa. Botryosphaeriaceae species on Eucalyptus species and S. cordatum are fairly well known from South Africa. However, this study revealed new associations, indicating that conclusions should not be generalized and that more intensive sampling from different areas and over time is likely to reveal distinct species and host association patterns.The National Research Foundation (NRF), members of the Tree Protection Co-operative Programme (TPCP) and the Department of Science and Technology (DST)/NRF Centre of Excellence in Tree Health Biotechnology (CTHB), South Africa. Open Access funded by SAAB.http://www.elsevier.com/locate/sajbhb2016Forestry and Agricultural Biotechnology Institute (FABI)Genetic

    Genetic signatures of variation in population size in a native fungal pathogen after the recent intensive plantation of its host tree

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    Historical fluctuations in forests’ distribution driven by past climate changes and anthropogenic activities can have large impacts on the demographic history of pathogens that have a long co-evolution history with these host trees. Using a population genetic approach, we investigated that hypothesis by reconstructing the demographic history of Armillaria ostoyae, one of the major pathogens of the maritime pine (Pinus pinaster), in the largest monospecific pine planted forest in Europe (south-western France). Genetic structure analyses and approximate Bayesian computation approaches revealed that a single pathogen population underwent a severe reduction in effective size (12 times lower) 1080–2080 generations ago, followed by an expansion (4 times higher) during the last 4 generations. These results are consistent with the history of the maritime pine forest in the region characterized by a strong recession during the last glaciation (~19 000 years ago) and massive plantations during the second half of the nineteenth century. Results suggest that recent and intensive plantations of a host tree population have offered the opportunity for a rapid spread and adaptation of their pathogens

    Gene flow of the canker pathogen Botryosphaeria australis between plantations and native eucalypt forests

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    The plantation industry in Western Australia provides a unique opportunity to study the movement of pathogens between closely related host taxa. Eucalyptus globulus, a native to Tasmania and southeastern Australia, is the predominant species in Western Australian plantations, often being planted adjacent to native forest containing E. marginata and E. diversicolor. Since the commencement of the plantation industry 20 years ago, several fungal species, previously known only to eastern Australia or overseas, have been reported on E. globulus in Western Australia. Botryosphaeria australis is a newly described species only recently found causing cankers on Acacia spp. in eastern Australia. During a routine survey, its presence was found on E. globulus in Western Australia

    Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens

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    Vascular wilts are important diseases caused by plant pathogenic fungi that result in the rapid death of their plant hosts. This is due to a systemic defense mechanism whereby the plant induces the compartmentalization of the infected vascular system in order to reduce the propagation of the fungus. The ascomycete class Sordariomycetes contains several species that cause vascular wilts in diverse plant hosts, and they can be classified into four taxonomic orders. The genetic mechanisms of pathogenesis have already been investigated in Fusarium and Verticillium species, but they have not yet been compared with other well-known wilt-causing species, especially fungi causing oak wilt or Dutch elm disease (DED). Here we analyzed 20 whole genome assemblies of wilt-causing fungi together with 56 other species using phylogenetic approaches to trace expansions and contractions of orthologous gene families and gene classes related to pathogenicity. We found that the wilt-causing pathogens evolved seven times, experiencing the largest fold changes in different classes of genes almost every time. However, some similarities exist across groups of wilt pathogens, particularly in Microascales and Ophiostomatales, and these include the common gains and losses of genes that make up secondary metabolite clusters (SMC). DED pathogens do not experience large-scale gene expansions, with most of the gene classes, except for some SMC families, reducing in number. We also found that gene family expansions in the most recent common ancestors of wilt pathogen groups are enriched for carbohydrate metabolic processes. Our study shows that wilt-causing species evolve primarily through distinct changes in their repertoires of pathogenicity-related genes and that there is the potential importance of carbohydrate metabolism genes for regulating osmosis in those pathogens that penetrate the plant vascular system
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