Synchronous population fluctuations of forest and field voles: implications for population management

Tkadlec, E., Suchomel, J., Purchart, L., Heroldová, M., Čepelka, L., Homolka, M

Effects of drying procedures on chemical composition and nutritive value of alfalfa forage

The effects of various drying procedures of alfalfa forage were evaluated on chemical composition, in vitro neutral detergent fibre (NDF) and dry matter (DM) digestibility, in situ DM, organic matter and crude protein (CP) degradability. The alfalfa had been harvested in the spring growth (early bud and flowering) and first regrowth (late bud and late flowering) periods. The samples were dried at 30 °C (T30), 40 °C (T40), 50 °C (T50), 60 °C (T60) and 100 °C (T100) in a forced-air oven or frozen for one month and then freeze-dried (TFD) or oven-dried at 50 °C (TFREE). Another drying procedure included pre-treatment by heating in a microwave oven (TMO) or in a forced-air oven at 100 °C for 1 hour (T100+50) and then oven-dried at 50 °C. The freeze-drying method was chosen as a reference method. Freeze-dried samples had the lowest NDF, acid detergent fibre (ADF), acid detergent lignin (ADL), neutral detergent insoluble protein (NDIP) and acid detergent insoluble protein contents (P <0.05). Additionally, freeze-dried products had the highest CP, in vitro true digestibility of DM and CP degradability values (P <0.05). There was no added benefit of the TMO in the chemical composition, in vitro digestibility or in situ degradation compared with T50. This study showed that T50 can yield chemical composition, in vitro and in situ results that are similar to those obtained with the freeze-drying method and that this procedure is useful for forage analyses and evaluation.Keywords: freeze-drying, insoluble nitrogen, in vitro digestibility, oven-drying, ruminant

Soil Amplification at Treasure Island During the Loma Prieta Earthquake

The Loma Prieta Earthquake ground motions recorded on Treasure Island, a man-made fill in San Francisco Bay were considerably greater than on the adjacent Yerba Buena rock outcrop. The Yerba Buena motions were used as input to the computer program SHAKE90 for computing soil amplification at Treasure Island. Shear wave propagation velocities were obtained by seismic cone penetration testing. Reasonable agreement was observed between the computed and recorded accelerations at the strong motion recording station. The maximum computed accelerations around the island ranged from 0.13 to 0.20 g\u27s. The degree of damage at various locations on the island correlated somewhat with the maximum computed accelerations

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

Strain-specific genomic diversity in the Mycobacterium tuberculosis complex (MTBC) is an important factor in pathogenesis that may affect virulence, transmissibility, host response and emergence of drug resistance. Several systems have been proposed to classify MTBC strains into distinct lineages and families. Here, we investigate single-nucleotide polymorphisms (SNPs) as robust (stable) markers of genetic variation for phylogenetic analysis. We identify ~92k SNP across a global collection of 1,601 genomes. The SNP-based phylogeny is consistent with the gold-standard regions of difference (RD) classification system. Of the ~7k strain-specific SNPs identified, 62 markers are proposed to discriminate known circulating strains. This SNP-based barcode is the first to cover all main lineages, and classifies a greater number of sublineages than current alternatives. It may be used to classify clinical isolates to evaluate tools to control the disease, including therapeutics and vaccines whose effectiveness may vary by strain type

High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography

Mycobacterium tuberculosis infects one third of the human world population and kills someone every 15 seconds. For more than a century, scientists and clinicians have been distinguishing between the human- and animal-adapted members of the M. tuberculosis complex (MTBC). However, all human-adapted strains of MTBC have traditionally been considered to be essentially identical. We surveyed sequence diversity within a global collection of strains belonging to MTBC using seven megabase pairs of DNA sequence data. We show that the members of MTBC affecting humans are more genetically diverse than generally assumed, and that this diversity can be linked to human demographic and migratory events. We further demonstrate that these organisms are under extremely reduced purifying selection and that, as a result of increased genetic drift, much of this genetic diversity is likely to have functional consequences. Our findings suggest that the current increases in human population, urbanization, and global travel, combined with the population genetic characteristics of M. tuberculosis described here, could contribute to the emergence and spread of drug-resistant tuberculosis

Z_2-Regge versus Standard Regge Calculus in two dimensions

We consider two versions of quantum Regge calculus. The Standard Regge Calculus where the quadratic link lengths of the simplicial manifold vary continuously and the Z_2-Regge Model where they are restricted to two possible values. The goal is to determine whether the computationally more easily accessible Z_2 model still retains the universal characteristics of standard Regge theory in two dimensions. In order to compare observables such as average curvature or Liouville field susceptibility, we use in both models the same functional integration measure, which is chosen to render the Z_2-Regge Model particularly simple. Expectation values are computed numerically and agree qualitatively for positive bare couplings. The phase transition within the Z_2-Regge Model is analyzed by mean-field theory.Comment: 21 pages, 16 ps-figures, to be published in Phys. Rev.

Report on Experiment CE06: Measurements of Nuclear Reactions using Recoil Detection

This research was sponsored by the National Science Foundation Grant NSF PHY-931478