117 research outputs found
Existence, uniqueness and stability of random impulsive neutral partial differential equations
AbstractIn this paper, the existence, uniqueness and stability via continuous dependence of mild solution of neutral partial differential equations with random impulses are studied under sufficient condition via fixed point theory
Dicyclohexylbis(naphthalen-1-ylmethyl)phosphonium chloride chloroform disolvate
In the title solvated phosphonium salt, C34H40P+·Cl -·2CHCl3, the two cyclohexyl and two 1-naphthylmethyl groups at the P atom are in a distorted tetrahedral arrangement [105.26 (6)-113.35 (6)°]. Both cyclohexyl rings adopt a chair conformation. The dihedral angle between the naphthyl ring systems is 74.08 (3)°
Regression based predictor for p53 transactivation
<p>Abstract</p> <p>Background</p> <p>The p53 protein is a master regulator that controls the transcription of many genes in various pathways in response to a variety of stress signals. The extent of this regulation depends in part on the binding affinity of p53 to its response elements (REs). Traditional profile scores for p53 based on position weight matrices (PWM) are only a weak indicator of binding affinity because the level of binding also depends on various other factors such as interaction between the nucleotides and, in case of p53-REs, the extent of the spacer between the dimers.</p> <p>Results</p> <p>In the current study we introduce a novel <it>in-silico </it>predictor for p53-RE transactivation capability based on a combination of multidimensional scaling and multinomial logistic regression. Experimentally validated known p53-REs along with their transactivation capabilities are used for training. Through cross-validation studies we show that our method outperforms other existing methods. To demonstrate the utility of this method we (a) rank putative p53-REs of target genes and target microRNAs based on the predicted transactivation capability and (b) study the implication of polymorphisms overlapping p53-RE on its transactivation capability.</p> <p>Conclusion</p> <p>Taking into account both nucleotide interactions and the spacer length of p53-RE, we have created a novel <it>in-silico </it>regression-based transactivation capability predictor for p53-REs and used it to analyze validated and novel p53-REs and to predict the impact of SNPs overlapping these elements.</p
Streptococcus infantis, Streptococcus mitis, and Streptococcus oralis Strains With Highly Similar cps5 Loci and Antigenic Relatedness to Serotype 5 Pneumococci
Streptococcus pneumoniae is a highly impactful bacterial pathogen on a global scale. The principal pneumococcal virulence factor and target of effective vaccines is its polysaccharide capsule, of which there are many structurally distinct forms. Here, we describe four distinct strains of three Mitis group commensal species (Streptococcus infantis, Streptococcus mitis, and Streptococcus oralis) recovered from upper respiratory tract specimens from adults in Kenya and the United States that were PCR-positive for the pneumococcal serotype 5 specific gene, wzy5. For each of the four strains, the 15 genes comprising the capsular polysaccharide biosynthetic gene cluster (cps5) shared the same order found in serotype 5 pneumococci, and each of the serotype 5-specific genes from the serotype 5 pneumococcal reference strain shared 76–99% sequence identity with the non-pneumococcal counterparts. Double-diffusion experiments demonstrated specific reactivity of the non-pneumococcal strains with pneumococcal serotype 5 typing sera. Antiserum raised against S. mitis strain KE67013 specifically reacted with serotype 5 pneumococci for a positive Quellung reaction and stimulated serotype 5 specific opsonophagocytic killing of pneumococci. Four additional commensal strains, identified using PCR serotyping assays on pharyngeal specimens, revealed loci highly homologous to those of pneumococci of serotypes 12F, 15A, 18C, and 33F. These data, in particular the species and strain diversity shown for serotype 5, highlight the existence of a broad non-pneumococcal species reservoir in the upper respiratory tract for the expression of capsular polysaccharides that are structurally related or identical to those corresponding to epidemiologically significant serotypes. Very little is known about the genetic and antigenic capsular diversity among the vast array of commensal streptococcal strains that represent multiple diverse species. The discovery of serotype 5 strains within three different commensal species suggests that extensive capsular serologic overlap exists between pneumococci and other members of the diverse Mitis group. These findings may have implications for our current understanding of naturally acquired immunity to S. pneumoniae and pneumococcal serotype distributions in different global regions. Further characterization of commensal strains carrying homologs of serotype-specific genes previously thought to be specific for pneumococci of known serotypes may shed light on the evolution of these important loci
SOFT COMPUTING BASED CONTROLLERS FOR ELECTRIC DRIVES - A COMPARATIVE APPROACH
ABSTRACT PID controllers are widely used in industrial plants because it is simple and robust. Industrial processes are subjected to variation in parameters and parameter perturbations, which when significant makes the system unstable. The aim of this paper is to design a controller for applications of various electric drives in industry by selection of PID parameters using soft computing techniques. Performance of Z-N methods have been compared and analyzed with the intelligent tuning techniques like Genetic algorithm, Evolutionary Programming, Particle Swarm Optimization and Bacterial Foraging Optimization. Soft computing methods have proved their excellence in giving better results by improving the steady state characteristics and performance indices
Riemann–Liouville fractional integral of non-affine fractal interpolation function and its fractional operator
This paper mainly investigates the Riemann–Liouville fractional integral of -fractal function and fractional operator of -fractal function that maps the given continuous function to its Riemann–Liouville fractional integral. The Riemann–Liouville fractional integral is explored for -fractal function by choosing vertical scaling factor as a constant as well as a continuous function defined on the closed interval of interpolation. Further, the boundedness and linearity of the fractional operator of -fractal function are investigated. Finally, the semigroup property for the collection of fractional operators defined on are discussed
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(η6-Benzene)dichlorido(chlorodicyclohexylphosphane-κp) ruthenium(II) chloroform monosolvate
The title compound, [RuN4(-6-C6H6) (C12H22ClP)]-CHCl3, was prepared by reaction of [RuN 4(-6-C6H6)]2 with chlorodicyclohexyl phosphane in CHCl3 at 323 K under argon. The RuII atom is surrounded by one arene ligand, two Cl atoms and a phosphane ligand in a piano-stool geometry. The phosphane ligand is linked by the P atom, with an Ru-P bond length of 2.3247 (4) Ă…. Both cyclohexyl rings at the P atom adopt a chair conformation. In the crystal, the RuII complex molecule and the chloroform solvent molecule are linked by a bifurcated C-Hâ‹Ż(Cl,Cl) hydrogen bond. Intramolecular C-Hâ‹ŻCl hydrogen bonds are also observed
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