1,745 research outputs found
Fast Label Extraction in the CDAWG
The compact directed acyclic word graph (CDAWG) of a string of length
takes space proportional just to the number of right extensions of the
maximal repeats of , and it is thus an appealing index for highly repetitive
datasets, like collections of genomes from similar species, in which grows
significantly more slowly than . We reduce from to
the time needed to count the number of occurrences of a pattern of
length , using an existing data structure that takes an amount of space
proportional to the size of the CDAWG. This implies a reduction from
to in the time needed to
locate all the occurrences of the pattern. We also reduce from
to the time needed to read the characters of the
label of an edge of the suffix tree of , and we reduce from
to the time needed to compute the matching
statistics between a query of length and , using an existing
representation of the suffix tree based on the CDAWG. All such improvements
derive from extracting the label of a vertex or of an arc of the CDAWG using a
straight-line program induced by the reversed CDAWG.Comment: 16 pages, 1 figure. In proceedings of the 24th International
Symposium on String Processing and Information Retrieval (SPIRE 2017). arXiv
admin note: text overlap with arXiv:1705.0864
No Effect of Steady Rotation on Solid He in a Torsional Oscillator
We have measured the response of a torsional oscillator containing
polycrystalline hcp solid He to applied steady rotation in an attempt to
verify the observations of several other groups that were initially interpreted
as evidence for macroscopic quantum effects. The geometry of the cell was that
of a simple annulus, with a fill line of relatively narrow diameter in the
centre of the torsion rod. Varying the angular velocity of rotation up to
2\,rad\,s showed that there were no step-like features in the resonant
frequency or dissipation of the oscillator and no history dependence, even
though we achieved the sensitivity required to detect the various effects seen
in earlier experiments on other rotating cryostats. All small changes during
rotation were consistent with those occurring with an empty cell. We thus
observed no effects on the samples of solid He attributable to steady
rotation.Comment: 8 pages, 3 figures, accepted in J. Low Temp. Phy
Composite repetition-aware data structures
In highly repetitive strings, like collections of genomes from the same
species, distinct measures of repetition all grow sublinearly in the length of
the text, and indexes targeted to such strings typically depend only on one of
these measures. We describe two data structures whose size depends on multiple
measures of repetition at once, and that provide competitive tradeoffs between
the time for counting and reporting all the exact occurrences of a pattern, and
the space taken by the structure. The key component of our constructions is the
run-length encoded BWT (RLBWT), which takes space proportional to the number of
BWT runs: rather than augmenting RLBWT with suffix array samples, we combine it
with data structures from LZ77 indexes, which take space proportional to the
number of LZ77 factors, and with the compact directed acyclic word graph
(CDAWG), which takes space proportional to the number of extensions of maximal
repeats. The combination of CDAWG and RLBWT enables also a new representation
of the suffix tree, whose size depends again on the number of extensions of
maximal repeats, and that is powerful enough to support matching statistics and
constant-space traversal.Comment: (the name of the third co-author was inadvertently omitted from
previous version
Suffix Tree of Alignment: An Efficient Index for Similar Data
We consider an index data structure for similar strings. The generalized
suffix tree can be a solution for this. The generalized suffix tree of two
strings and is a compacted trie representing all suffixes in and
. It has leaves and can be constructed in time.
However, if the two strings are similar, the generalized suffix tree is not
efficient because it does not exploit the similarity which is usually
represented as an alignment of and .
In this paper we propose a space/time-efficient suffix tree of alignment
which wisely exploits the similarity in an alignment. Our suffix tree for an
alignment of and has leaves where is the sum of
the lengths of all parts of different from and is the sum of the
lengths of some common parts of and . We did not compromise the pattern
search to reduce the space. Our suffix tree can be searched for a pattern
in time where is the number of occurrences of in and
. We also present an efficient algorithm to construct the suffix tree of
alignment. When the suffix tree is constructed from scratch, the algorithm
requires time where is the sum of the lengths
of other common substrings of and . When the suffix tree of is
already given, it requires time.Comment: 12 page
Screening of positrons in semiconductors and insulators
Theoretical models are presented for the enhancement of the electron density at a positron in a semiconductor or insulator host. The model better suited for typical semiconductors is based on the many-body theory for the screening of a positron in electron gas. The starting point of the model for insulators is the atomic polarizability. The common parameter in both models is the high-frequency dielectric constant. Moreover, the enhancement depends on the ambient electron density in the semiconductor model and on the unit-cell volume in the insulator model. With use of the models developed, positron lifetimes in perfect semiconductor and insulator crystals have been calculated. In the calculations, three-dimensional electron densities and electrostatic potentials are obtained by atomic superposition and the fully three-dimensional positron wave functions are solved by a relaxation method. The calculated positron lifetimes agree with the experimental ones within a few picoseconds. Moreover, we have used the model to predict lifetimes of positrons trapped by lattice defects such as vacancies and vacancy clusters.Peer reviewe
Investigating thermal properties of gas-filled planetary regoliths using a thermal probe
We introduce a general purpose penetrator, fitted with a heater, for measuring temperature and thermal diffusivity. Due to its simplicity of deployment and operation the penetrator is well suited for remote deployment by spacecraft into a planetary regolith. Thermal measurements in planetary regoliths are required to determine the surface energy balance and to measure their thermal properties. If the regolith is on a planet with an atmosphere a good understanding of the role of convection is required to properly interpret the measurements. This could also help to identify the significant heat and mass exchange mechanisms between the regolith and the atmosphere. To understand the role of convection in our regolith analogues we use a network of temperature sensors placed in the target. In practical applications a penetrator will push material out of the way as it enters a target possible changing its thermal properties. To investigate this effect a custom built test rig, that precisely controls and monitors the motion of the penetrator, is used. The thermal diffusivity of limestone powder and sand is derived by fitting a numerical thermal model to the temperature measurements.
Convection seems to play an important role in the transfer of heat in this case. Firstly a diffusion-convection model fits the laboratory data better than a diffusivity-only model. Also the diffusivity derived from a diffusivity-convection model was found to be in good agreement with diffusivity derived using other methods published in the literature. Thermal diffusivity measurements, inspection of the horizontal temperature profiles and visual observations suggests that limestone powder is compacted more readily than sand during entry of the penetrator into the target. For both regolith analogues the disturbance of material around the penetrator was determined to have an insignificant effect on the diffusivity measurements in this case
Роль маркетинга в сфере культуры
Сегодня все мы ощущаем завершение очередного этапа развития нашего общества, который выражается в многочисленных кризисах (политическом, экономическом, экологическом и т.д.), что в полной мере
отражает художественная культура
Avalanches in Wood Compression
Wood is a multiscale material exhibiting a complex viscoplastic response. We study avalanches in small wood samples in compression. “Woodquakes” measured by acoustic emission are surprisingly similar to earthquakes and crackling noise in rocks and laboratory tests on brittle materials. Both the distributions of event energies and of waiting (silent) times follow power laws. The stress-strain response exhibits clear signatures of localization of deformation to “weak spots” or softwood layers, as identified using digital image correlation. Even though material structure-dependent localization takes place, the avalanche behavior remains scale-free.Peer reviewe
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