A new approach to data publication in ocean sciences

Data are collected from ocean sciences activities that range from a single investigator working in a laboratory to large teams of scientists cooperating on big, multinational, global ocean research projects. What these activities have in common is that all result in data, some of which are used as the basis for publications in peer-reviewed journals.However, two major problems regarding data remain. First, many data valuable for understanding ocean physics, chemistry, geology, biology, and how the oceans operate in the Earth system are never archived or made accessible to other scientists. Data underlying traditional journal articles are often difficult to obtain. Second, when scientists do contribute data to databases, their data become freely available, with little acknowledgment and no contribution to their career advancement. To address these problems, stronger ties must be made between data repositories and academic journals, and a “digital backbone” needs to be created for data related to journal publications

Rotation and Color Properties of the Nucleus of Comet 2P/Encke

We present results from CCD observations of comet 2P/Encke acquired at Steward Observatory's 2.3m Bok Telescope on Kitt Peak obtained in Oct. 2002, when the comet was near aphelion. Rotational lightcurves in B, V and R-filters were acquired over two nights of observations, and analysed to study the physical and color properties of the nucleus. The average apparent R-filter magnitude across both nights corresponds to a mean effective radius of 3.95 +/- 0.06 km. The rotational lightcurve results in a nucleus axial ratio a/b >= 1.44 +/- 0.06 and semi-axes lengths of [3.60 +/- 0.09] x [5.20 +/- 0.13] km. Our data includes the first detailed time series multi-color measurements of a cometary nucleus, and significant color variations were seen. The average color indices across both nights are: (V-R) = 0.39 +/- 0.06 and (B-V) = 0.73 +/- 0.06 (R_mean = 19.76 +/- 0.03). We linked our data with the September 2002 data from Fernandez et al. (2005) - taken just 2-3 weeks before the current data set - and we show that a rotation period of 11.083 +/- 0.003hours works extrememly well for the combined data set.Comment: Accepted for publication in Icarus (Dec 2006). 27 page

Mosquitoes of New Hampshire, Bulletin, no. 243

The Bulletin is a publication of the New Hampshire Agricultural Experiment Station, College of Life Sciences and Agriculture, University of New Hampshire, Durham, New Hampshire

Natural organic matter in sedimentary basins and its relation to arsenic in anoxic ground water: the example of West Bengal and its worldwide implications

In order to investigate the mechanism of As release to anoxic ground water in alluvial aquifers, the authors sampled ground waters from 3 piezometer nests, 79 shallow (80 m) wells, in an area 750 m by 450 m, just north of Barasat, near Kolkata (Calcutta), in southern West Bengal. High concentrations of As (200-1180 mug L-1) are accompanied by high concentrations of Fe (3-13.7 mgL(-1)) and PO4 (1-6.5 mg L-1). Ground water that is rich in Mn (1-5.3 mg L-1) contains <50 mug L-1 of As. The composition of shallow ground water varies at the 100-m scale laterally and the metre-scale vertically, with vertical gradients in As concentration reaching 200 mug L-1 m(-1). The As is supplied by reductive dissolution of FeOOH and release of the sorbed As to solution. The process is driven by natural organic matter in peaty strata both within the aquifer sands and in the overlying confining unit. In well waters, thermotolerant coliforms, a proxy for faecal contamination, are not present in high numbers (<10 cfu/100 ml in 85% of wells) showing that faecally-derived organic matter does not enter the aquifer, does not drive reduction of FeOOH, and so does not release As to ground water.Arsenic concentrations are high (much greater than50 mug L-1) where reduction of FeOOH is complete and its entire load of sorbed As is released to solution, at which point the aquifer sediments become grey in colour as FeOOH vanishes. Where reduction is incomplete, the sediments are brown in colour and resorption of As to residual FeOOH keeps As concentrations below 10 mug L-1 in the presence of dissolved Fe. Sorbed As released by reduction of Mn oxides does not increase As in ground water because the As resorbs to FeOOH. High concentrations of As are common in alluvial aquifers of the Bengal Basin arise because Himalayan erosion supplies immature sediments, with low surface-loadings of FeOOH on mineral grains, to a depositional environment that is rich in organic mater so that complete reduction of FeOOH is common. (C) 2004 Published by Elsevier Ltd

Deglacial grounding-line retreat in the Ross Embayment, Antarctica, controlled by ocean and atmosphere forcing

Modern observations appear to link warming oceanic conditions with Antarctic ice sheet grounding-line retreat. Yet, interpretations of past ice sheet retreat over the last deglaciation in the Ross Embayment, Antarctica’s largest catchment, differ considerably and imply either extremely high or very low sensitivity to environmental forcing. To investigate this, we perform regional ice sheet simulations using a wide range of atmosphere and ocean forcings. Constrained by marine and terrestrial geological data, these models predict earliest retreat in the central embayment and rapid terrestrial ice sheet thinning during the Early Holocene. We find that atmospheric conditions early in the deglacial period can enhance or diminish ice sheet sensitivity to rising ocean temperatures, thereby controlling the initial timing and spatial pattern of grounding-line retreat. Through the Holocene, however, grounding-line position is much more sensitive to subshelf melt rates, implicating ocean thermal forcing as the key driver of past ice sheet retreat

Chiral molecules split light: Reflection and refraction in a chiral liquid

A light beam changes direction as it enters a liquid at an angle from another medium, such as air. Should the liquid contain molecules that lack mirror symmetry, then it has been predicted by Fresnel that the light beam will not only change direction, but will actually split into two separate beams with a small difference in the respective angles of refraction. Here we report the observation of this phenomenon. We also demonstrate that the angle of reflection does not equal the angle of incidence in a chiral medium. Unlike conventional optical rotation, which depends on the path-length through the sample, the reported reflection and refraction phenomena arise within a few wavelengths at the interface and thereby suggest a new approach to polarimetry that can be used in microfluidic volumes

Further Characterization of Dopamine Release by Permeabilized PC 12 Cells

Rat pheochromocytoma cells (PC 12) permeabilized with staphylococcal α-toxin release [3H]dopamine after addition of micromolar Ca2+. This does not require additional Mg2+-ATP (in contrast to bovine adrenal medullary chromaffin cells). We also observed Ca2+-dependent [3H]-dopamine release from digitonin-permeabilized PC 12 cells. Permeabilization with α-toxin or digitonin and stimulation of the cells were done consecutively to wash out endogenous Mg2+-ATP. During permeabilization, ATP was removed effectively from the cytoplasm by both agents but the cells released [3H]dopamine in response to micromolar Ca2+ alone. Replacement by chloride of glutamate, which could sustain mitochondrial ATP production in permeabilized cells, does not significantly alter catecholamine release induced by Ca2+. However, Mg2+ without ATP augments the Ca2+-induced release. The release was unaltered by thiol-, hydroxyl-, or calmodulin-interfering substances. Thus Mg2+-ATP, calmodulin, or proteins containing -SH or -OH groups are not necessary for exocytosis in permeabilized PC 12 cells