Disturbance promotes non-indigenous bacterial invasion in soil microcosms:analysis of the roles of resource availability and community structure

Invasion-biology is largely based on non-experimental observation of larger organisms. Here, we apply an experimental approach to the subject. By using microbial-based microcosm-experiments, invasion-biology can be placed on firmer experimental, and hence, less anecdotal ground. A better understanding of the mechanisms that govern invasion-success of bacteria in soil communities will provide knowledge on the factors that hinder successful establishment of bacteria artificially inoculated into soil, e.g. for remediation purposes. Further, it will yield valuable information on general principles of invasion biology in other domains of life.Here, we studied invasion and establishment success of GFP-tagged Pseudomonas fluorescens DSM 50090 in laboratory microcosms during a 42-day period. We used soil heating to create a disturbance gradient, and hypothesized that increased disturbance would facilitate invasion; our experiments confirmed this hypothesis. We suggest that the key factors associated with the heating disturbance that explain the enhanced invasion success are increased carbon substrate availability and reduced diversity, and thus, competition- and predation-release. In a second experiment we therefore separated the effects of increased carbon availability and decreased diversity. Here, we demonstrated that the effect of the indigenous soil community on bacterial invasion was stronger than that of resource availability. In particular, introduced bacteria established better in a long term perspective at lower diversity and predation pressure.We propose increased use of microbial systems, for experimental study of invasion scenarios. They offer a simple and cost-efficient way to study and understand biological invasion. Consequently such systems can help us to better predict the mechanisms controlling changes in stability of communities and ecosystems. This is becoming increasingly relevant since anthropogenic disturbance causes increasing global change, which promotes invasion. Moreover, a thorough understanding of factors controlling invasion and establishment of artificially amended micro-organisms will mean a major step forward for soil-remediation microbiology

Resilience of soil functions to transient and persistent stresses is improved more by residue incorporation than the activity of earthworms

The development of soil sustainability is linked to the improved management of soil biota, such as earthworms, and crop residues to improve soil physical structure, enhance microbial activities, and increase nutrient cycling. This study examined the impacts of maize residue (65.8 C/N ratio, dry biomass 0.75 kg m-2) incorporation and earthworms (70 g Metaphire guillelmi m-2) on the resistance and resilience of soil C and N cycling to experimentally applied stresses. Field treatments were maize residue incorporation, maize residue incorporation with earthworm addition, and an unamended control. Resistance and resilience of C mineralization, ammonia oxidation, and potential denitrification were investigated over 28 days following a persistent stress of Cu (1 mg Cu soil g-1) or a transient heat stress (50 ℃ for 16 hours). The results indicated that C mineralization was more resistant and resilient than ammonia oxidation and denitrification to either a persistent Cu or a transient heat stress. The application of maize residues significantly increased soil microbial biomass, C mineralization, ammonia oxidation and potential denitrification compared with the unamended control. Maize residues significantly improved the resistance and resilience of N processes to Cu and heat stress. The presence of earthworms significantly increased potential denitrification but had limited positive effect on functional resistance and resilience. This study suggested crop residue incorporation would strongly increase soil functional resistance and resilience to persistent and transient stresses, and thus could be a useful agricultural practice to improve soil ecosystem sustainability

Human migration activities drive the fluctuation of ARGs : Case study of landfills in Nanjing, eastern China

Landfills are perfect sites to study the effect of human migration on fluctuation of antibiotic resistance genes (ARGs) as they are the final destination of municipal waste. For example, large-scale human migration during the holidays is often accompanied by changes in waste dumping having potential effects on ARG abundance. Three landfills were selected to examine fluctuation in the abundance of fifteen ARGs and Intl1 genes for 14 months in Nanjing, eastern China. Mass human migration, the amount of dumped waste and temperature exerted the most significant effects on bimonthly fluctuations of ARG levels in landfill sites. As a middle-sized cosmopolitan city in China, millions of college students and workers migrate during holidays, contributing to the dramatic increases in waste production and fluctuation in ARG abundances. In line with this, mass migration explained most of the variation in waste dumping. The waste dumping also affected the bioaccessibility of mixed-compound pollutants that further positively impacted the level of ARGs. The influence of various bioaccessible compounds on ARG abundance followed the order: antibiotics>nutrients>metals>organic pollutants. Concentrations of bioaccessible compounds were more strongly correlated with ARG levels compared to total compound concentrations. Improved waste classification and management strategies could thus help to decrease the amount of bioaccessible pollutants leading to more effective control for urban ARG dissemination

Earthworms affect plant growth and resistance against herbivores:A meta‐analysis

1. Subterranean detritivores such as earthworms can increase soil nutrient availability through their burrowing and casting activities. A number of recent studies have explored whether these changes caused by earthworms may in turn affect plant performance and resistance to herbivores, but no formal synthesis of this literature has been conducted to date. 2. We tested for the effects of earthworms on plant growth, resistance and chemical defences against insect herbivores by performing a meta-analysis of the existing literature up to 2016. We also explored ecological factors that might explain among-studies variation in the magnitude of the earthworm effects on plant growth and resistance. 3. We found that earthworm presence increases plant growth (by 20%) and nitrogen content (by 11%). Overall, earthworms did not affect plant resistance against chewing herbivores (caterpillars, slugs and rootworms), and even led to a 22% decrease in plant resistance against phloem-feeding herbivores (aphids). However, earthworm presence increased production of chemical defences by 31% when plants where attacked by cell-feeders (thrips), and resulted in an 81% increase in resistance against thrips. The magnitude of earthworm effects was stronger when earthworm inoculations consisted of a mix of species and ecological types, and when densities of earthworms were high. 4. These results suggest that earthworm presence is an important factor underlying natural variation in plant defences against herbivores, and call for a better integration of the soil fauna in the studies of plant-herbivore interaction, both for applied and fundamental research

Nematodes and Microorganisms Interactively Stimulate Soil Organic Carbon Turnover in the Macroaggregates

The intra-aggregate architecture of soil macroaggregates provides suitable microhabitats for nematodes to graze on microorganisms. However, it is not fully clear how nematodes and microbial communities interactively mediate soil organic carbon (SOC) turnover. Here, we aimed to illustrate the relationships between nematodes, microbial community, and SOC turnover in the macroaggregates of a red soil receiving long-term manure application. Soil macroaggregates (>2 mm) were sampled from an 11-year field experiment including four manure treatments: no manure (M0), low manure rate (M1), high manure rate (M2), and high manure rate with lime (M3). The abundances of nematodes and microbial communities were substantially increased under manure treatments. Bacterivores dominated under the M2 and M3 treatments, while plant parasites were enriched under the M1 treatment. Phospholipid fatty acid analysis indicated that the ratio of bacteria to fungi significantly increased, but the ratio of Gram-positive bacteria to Gram-negative bacteria declined with the increasing manure addition. Random forest modeling showed that soil porosity had a primary effect on nematode assemblages, while pH and SOC contributed profoundly to the structure of the microbial community and carbon metabolic capacity. Structural equation modeling suggested that nematode grazing promoted carbon metabolic activities predominantly due to increased microbial biomass. Taken together, the mechanistic understanding of nematode-microorganism interactions may have important implications for improving soil fertility by nematode-mediated microbial processes

Evaluation of Student Performance with Predicted Learning Curve Based on Grey Models for Personalized Tutoring

Learning time of student is precious, over-practice of target knowledge component wastes student’s time, however, under-practice may mean the student may not grasp target knowledge component properly. To any student, it is helpful if intelligent tutoring system can determine how many practice opportunities needed for mastery of knowledge component. In this paper, to improve student’s learning efficiency, a method of predicted learning curve based on grey models is proposed to determine the counts of practice op-portunity for mastery of knowledge component. The experimental results show that the predicted value on error rate of practice opportunity over knowledge component with the proposed method is much closer to the value of real learning curve than the predicted learning curve produced by learning factors analysis. It implies the proposed prediction method is potential to present reasonable practices for personalized tutoring

New cave-dwelling species of Tomoceridae from China, with a study on the pattern of mesothoracic bothriotricha in Tomocerinae (Collembola, Entomobryomorpha)

Two new troglobitic species of Tomoceridae are described from Guizhou and Guangxi provinces, China. Tomocerus tiani sp. n. resembles Tomocerus kinoshitai Yosii, 1954, Tomocerus caecus Yu & Deharveng, 2015 and Tomocerus similis Chen & Ma, 1997 but differs from them mainly in the body colour, the cephalic chaetotaxy and the number of manubrial pseudopores. Monodontocerus cinereus sp. n. is similar to Monodontocerus mulunensis Yu, Deharveng & Zhang, 2014 but is different from the latter in the body colour, the length of antennae, the number of ungual teeth and the chaetotaxy on Abd. III and Abd. IV. Special remarks are made on the mesothoracic bothriotricha in Tomocerinae

Data and R code for<b> </b>Continental-scale crop production as a function of the soil microbiome

Data and R code for Continental-scale crop production as a function of the soil microbiome</p