1,739 research outputs found

    Large-amplitude, short-wave peristalsis and its implications for transport

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    Valveless, tubular pumps are widespread in the animal kingdom, but the mechanism by which these pumps generate fluid flow is often in dispute. Where the pumping mechanism of many organs was once described as peristalsis, other mechanisms, such as dynamic suction pumping, have been suggested as possible alternative mechanisms. Peristalsis is often evaluated using criteria established in a technical definition for mechanical pumps, but this definition is based on a small-amplitude, long-wave approximation which biological pumps often violate. In this study, we use a direct numerical simulation of large-amplitude, short-wave peristalsis to investigate the relationships between fluid flow, compression frequency, compression wave speed, and tube occlusion. We also explore how the flows produced differ from the criteria outlined in the technical definition of peristalsis. We find that many of the technical criteria are violated by our model: Fluid flow speeds produced by peristalsis are greater than the speeds of the compression wave; fluid flow is pulsatile; and flow speed have a nonlinear relationship with compression frequency when compression wave speed is held constant. We suggest that the technical definition is inappropriate for evaluating peristalsis as a pumping mechanism for biological pumps because they too frequently violate the assumptions inherent in these criteria. Instead, we recommend that a simpler, more inclusive definition be used for assessing peristalsis as a pumping mechanism based on the presence of non-stationary compression sites that propagate unidirectionally along a tube without the need for a structurally fixed flow direction

    Coral reef communities, habitats and substrates in and near Sanctuary Zones of Ningaloo Marine Park

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    As Australia's longest fringing reef, Ningaloo Reef lies close to the mainland of northwest Australia in an area of high tourism potential. The establishment of Sanctuary Zones in and around the northern Ningaloo Marine Park has necessitated improvements in understanding of the biodiversity and distribution of habitats and substrates in the reef lagoon, its seaward barrier and the adjacent shelf environments. Using a combination of video transects in forereef to shelf environments, GPS controlled ground-truthing of colour satellite images and aerial photography for shallow lagoon settings, sixteen habitat types were identified and mapped regionally. Lagoon substrates described in previous reconnaissance were mapped here in greater detail, and some of the first data on poorly known forereef and shelf communities has been analysed from the video transects. There is a strong correlation between reef morphology, inherited substrate type and coral communities across reef lagoons and their associated barriers, where an energy gradient controlled by wave driven and tidal circulation in reef flat and lagoon environments is reflected in the distribution and cover of robust to more delicate coral communities. Morphological controls are less distinct in island-associated habitats, where increased turbidity, differing wave energy and more variable topography result in higher substrate variability and increasing soft coral communities. The data obtained in this study provide a background for management of biodiversity and monitoring of future impacts in some of the Sanctuary Zones likely to experience increased use in the northern Ningaloo Reef

    Why Are You So Slimy?

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    The epithelium of vertebrates is a complex tissue that houses a large variety of cells with different functions. One of its most important functions is protection and in many cases this function is achieved by exuding copious amounts of mucous that fight off diseases, harmful toxins and overall protect the species from external invaders. Mucous, made of mucin, is produced by specialized epithelial cells called goblet cells. Among vertebrates’, fishes are perhaps one of the major groups known to produce mucous, particularly stingrays. The Atlantic stingray, Dasyatis sabina is one of the few cartilaginous fishes known to inhabit both freshwater areas and saltwater areas. It has been suggested by that mucous production varies significantly among freshwater and saltwater populations. In this study we aim to characterize the epithelium of freshwater vs saltwater D. sabina by quantifying (if any) variations on goblet cells density among different populations (freshwater vs salt water). This study will contribute to a much-needed characterization of stingray epithelia that may be used as a baseline anatomical framework in future studies and will contribute to the limited epithelium related literature among lower vertebrates. In addition, this study will contribute to our understanding of the morphological bases for the differential mucous production among this populations to ultimately relate this to ecosystem differences and environmental issues including water pollution

    The Role of the Pericardium in the Valveless, Tubular Heart of the Tunicate, \u3cem\u3eCiona savignyi\u3c/em\u3e

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    Tunicates, small invertebrates within the phylum Chordata, possess a robust tubular heart which pumps blood through their open circulatory systems without the use of valves. This heart consists of two major components: the tubular myocardium, a flexible layer of myocardial cells that actively contracts to drive fluid down the length of the tube; and the pericardium, a stiff, outer layer of cells that surrounds the myocardium and creates a fluid-filled space between the myocardium and the pericardium. We investigated the role of the pericardium through in vivo manipulations on tunicate hearts and computational simulations of the myocardium and pericardium using the immersed boundary method. Experimental manipulations reveal that damage to the pericardium results in aneurysm-like bulging of the myocardium and major reductions in the net blood flow and percentage closure of the heart\u27s lumen during contraction. In addition, varying the pericardium-to-myocardium (PM) diameter ratio by increasing damage severity was positively correlated with peak dye flow in the heart. Computational simulations mirror the results of varying the PM ratio experimentally. Reducing the stiffness of the myocardium in the simulations reduced mean blood flow only for simulations without a pericardium. These results indicate that the pericardium has the ability to functionally increase the stiffness of the myocardium and limit myocardial aneurysms. The pericardium\u27s function is likely to enhance flow through the highly resistive circulatory system by acting as a support structure in the absence of connective tissue within the myocardium

    Large Amplitude, Short Wave Peristalsis and Its Implications for Transport

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    Valveless, tubular pumps are widespread in the animal kingdom, but the mechanism by which these pumps generate fluid flow is often in dispute. Where the pumping mechanism of many organs was once described as peristalsis, other mechanisms, such as dynamic suction pumping, have been suggested as possible alternative mechanisms. Peristalsis is often evaluated using criteria established in a technical definition for mechanical pumps, but this definition is based on a small-amplitude, long-wave approximation which biological pumps often violate. In this study, we use a direct numerical simulation of large-amplitude, short-wave peristalsis to investigate the relationships between fluid flow, compression frequency, compression wave speed, and tube occlusion. We also explore how the flows produced differ from the criteria outlined in the technical definition of peristalsis. We find that many of the technical criteria are violated by our model: Fluid flow speeds produced by peristalsis are greater than the speeds of the compression wave; fluid flow is pulsatile; and flow speed have a nonlinear relationship with compression frequency when compression wave speed is held constant. We suggest that the technical definition is inappropriate for evaluating peristalsis as a pumping mechanism for biological pumps because they too frequently violate the assumptions inherent in these criteria. Instead, we recommend that a simpler, more inclusive definition be used for assessing peristalsis as a pumping mechanism based on the presence of non-stationary compression sites that propagate unidirectionally along a tube without the need for a structurally fixed flow direction
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