Magnet bioreporter device for ecological toxicity assessment on heavy metal contamination of coal cinder sites

A novel magnet bioreporter device was developed in this research for soil toxicity assessment, via magnetic nanoparticles functionalized whole-cell bioreporters. The whole-cell bioreporter ADPWH-recA kept response capability to DNA damage after magnetic nanoparticles (MNPs) functionalization, and could be harvested from soil samples by permanent magnet to reduce the soil particle disturbance. Compared to conventional treatments applying bioreporter directly in soil-water mixture (SW-M treatment) or supernatant (SW-S treatment), MNPs functionalized bioreporter via the magnet device (MFB) treatment achieved high sensitivity to evaluate the toxicity and bioavailability of chromium contamination in soils from 10 mg/kg to 5000 mg/kg soil dry weight. The MNPs functionalized bioreporter also achieved high reproducibility with pH value from 5.0 to 9.0, salinity from 0% to 3% and temperature from 20 °C to 37 °C. A case study was carried out on the ecological toxicity assessment of heavy metal contamination at the coal cinder site via the magnet bioreporter device. The heavy metal toxicity declined with the increasing distance to the coal cinder point, and a significant accumulation of heavy metal toxicity was observed along the vertical distribution. No direct link was found between the pollution load index (PLI) and heavy metal toxicity, and the results suggested the bioreporter test monitored the toxicity of heavy metals in soils and was an important approach for ecological risk assessment. Magnet bioreporter device also offered the high throughput biological measurement and was feasible for in situ monitoring

Multi-focus image fusion based on non-negative sparse representation and patch-level consistency rectification

Most existing sparse representation-based (SR) fusion methods consider the local information of each image patch independently during fusion. Some spatial artifacts are easily introduced to the fused image. A sliding window technology is often employed by these methods to overcome this issue. However, this comes at the cost of high computational complexity. Alternatively, we come up with a novel multi-focus image fusion method that takes full consideration of the strong correlations among spatially adjacent image patches with NO need for a sliding window. To this end, a non-negative SR model with local consistency constraint (CNNSR) on the representation coefficients is first constructed to encode each image patch. Then a patch-level consistency rectification strategy is presented to merge the input image patches, by which the spatial artifacts in the fused images are greatly reduced. As well, a compact non-negative dictionary is constructed for the CNNSR model. Experimental results demonstrate that the proposed fusion method outperforms some state-of-the art methods. Moreover, the proposed method is computationally efficient, thereby facilitating real-world applications

Seismic modeling by optimizing regularized staggered-grid finite-difference operators using a time-space-domain dispersion-relationship-preserving method

The staggered-grid finite-difference (FD) method is widely used in numerical simulation of the wave equation. With stability conditions, grid dispersion often exists because of the discretization of the time and the spatial derivatives in the wave equation. Therefore, suppressing grid dispersion is a key problem for the staggered-grid FD schemes. To reduce the grid dispersion, the traditional method uses high-order staggered-grid schemes in the space domain. However, the wave is propagated in the time and space domain simultaneously. Therefore, some researchers proposed to derive staggered-grid FD schemes based on the time-space domain dispersion relationship. However, such methods were restricted to low frequencies and special angles of propagation. We have developed a regularizing technique to tackle the ill-conditioned property of the symmetric linear system and to stably provide approximate solutions of the FD coefficients for acoustic-wave equations. Dispersion analysis and seismic numerical simulations determined that the proposed method satisfies the dispersion relationship over a much wider range of frequencies and angles of propagation and can ensure FD coefficients being solved via a well-posed linear system and hence improve the forward modeling precision

Geochip: A high throughput genomic tool for linking community structure to functions

GeoChip is a comprehensive functional gene array that targets key functional genes involved in the geochemical cycling of N, C, and P, sulfate reduction, metal resistance and reduction, and contaminant degradation. Studies have shown the GeoChip to be a sensitive, specific, and high-throughput tool for microbial community analysis that has the power to link geochemical processes with microbial community structure. However, several challenges remain regarding the development and applications of microarrays for microbial community analysis

The dynamic change of microbial communities in crude oil contaminated soils from oilfields in China

To study the biodegradability of microbial communities in crude oil contamination, crude oil-contaminated soil samples from different areas of China were collected. Using polyphasic approach, this study explored the dynamic change of the microbial communities during natural accumulation in oilfield and how the constructed bioremediation systems reshape the composition of microbial communities. The abundance of oil-degrading microbes was highest when oil content was 3%–8%. This oil content is potentially optimal for oil-degrading bacteria proliferate. During a ∼12 months natural accumulation, the quantity of oil-degrading microbes increased from 105 to 108 cells/g of soil. A typical sample of Liaohe (LH, oil-contaminated site near Liaohe river, Liaoning Province, China) was remediated for 50 days to investigate the dynamic change of microbial communities. The average FDA (a fluorescein diacetate approach) activities reached 0.25 abs/h·g dry soil in the artificially enhanced repair system, 32% higher than the 0.19 abs/h·g dry soil in natural circumstances. The abundance of oil-degrading microbes increased steadily from 0.001 to 0.068. During remediation treatment, oil content in the soil sample was reduced from 6.0% to 3.7%. GC-MS analysis indicated up to 67% utilization of C10–C20 normal paraffin hydrocarbons, the typical compounds that undergo microbial degradation

A whole-cell bioreporter assay for quantitative genotoxicity evaluation of environmental samples

Whole-cell bioreporters have emerged as promising tools for genotoxicity evaluation, due to their rapidity, cost-effectiveness, sensitivity and selectivity. In this study, a method for detecting genotoxicity in environmental samples was developed using the bioluminescent whole-cell bioreporter Escherichia coli recA::luxCDABE. To further test its performance in a real world scenario, the E. coli bioreporter was applied in two cases: i) soil samples collected from chromium(VI) contaminated sites; ii) crude oil contaminated seawater collected after the Jiaozhou Bay oil spill which occurred in 2013. The chromium(VI) contaminated soils were pretreated by water extraction, and directly exposed to the bioreporter in two phases: aqueous soil extraction (water phase) and soil supernatant (solid phase). The results indicated that both extractable and soil particle fixed chromium(VI) were bioavailable to the bioreporter, and the solid-phase contact bioreporter assay provided a more precise evaluation of soil genotoxicity. For crude oil contaminated seawater, the response of the bioreporter clearly illustrated the spatial and time change in genotoxicity surrounding the spill site, suggesting that the crude oil degradation process decreased the genotoxic risk to ecosystem. In addition, the performance of the bioreporter was simulated by a modified cross-regulation gene expression model, which quantitatively described the DNA damage response of the E. coli bioreporter. Accordingly, the bioluminescent response of the bioreporter was calculated as the mitomycin C equivalent, enabling quantitative comparison of genotoxicities between different environmental samples. This bioreporter assay provides a rapid and sensitive screening tool for direct genotoxicity assessment of environmental samples

Construction of Platform-based Business Ecosystem

As the core and foundation of the business ecosystem, the platform determines its structure and operation mode. The research on platform strategy and business ecosystem is receiving more and more attention from all walks of life. This paper first provided the concept of a platform-based business ecosystem. Then, on the basis of the platform's "control mode" and "position on the industry chain, it designed four types of construction modes of business ecosystem: open participation, open technology, close symbiosis and channel control. In addition, combined with typical cases, it discussed the structure and operating characteristics of each type of business ecosystem. Finally, it analyzed weak points of this study and made some prospects for future study

Construction Approaches of Enterprise Innovation Network from the Perspective of Social Network

As an important means for enterprises to promote technological progress, product development and service level, innovation has an absolute role in enhancing enterprises’ innovation strength and market strength. In the context of frequent and rapid product replacement and shortened technological innovation cycle in modern society, through the embedding of social networks, forming platforms for higher education institutions, governments, capital markets, research institutions and intermediary links to promote the integration of innovation and capital development and make the most of every resource has become an important way. From the perspective of social network, the methods and necessary approaches for the establishment of enterprise innovation network are studied in this article