Integrating functional diversity, food web processes, and biogeochemical carbon fluxes into a conceptual approach for modeling the upper ocean in a high-CO2 world

Marine food webs influence climate by channeling carbon below the permanent pycnocline, where it can be sequestered. Because most of the organic matter exported from the euphotic zone is remineralized within the "upper ocean" (i.e., the water column above the depth of sequestration), the resulting CO2 would potentially return to the atmosphere on decadal timescales. Thus ocean-climate models must consider the cycling of carbon within and from the upper ocean down to the depth of sequestration, instead of only to the base of the euphotic zone. Climate-related changes in the upper ocean will influence the diversity and functioning of plankton functional types. In order to predict the interactions between the changing climate and the ocean's biology, relevant models must take into account the roles of functional biodiversity and pelagic ecosystem functioning in determining the biogeochemical fluxes of carbon. We propose the development of a class of models that consider the interactions, in the upper ocean, of functional types of plankton organisms (e.g., phytoplankton, heterotrophic bacteria, microzooplankton, large zooplankton, and microphagous macrozooplankton), food web processes that affect organic matter (e.g., synthesis, transformation, and remineralization), and biogeochemical carbon fluxes (e.g., photosynthesis, calcification, respiration, and deep transfer). Herein we develop a framework for this class of models, and we use it to make preliminary predictions for the upper ocean in a high-CO2 world, without and with iron fertilization. Finally, we suggest a general approach for implementing our proposed class of models

Ward's Hierarchical Clustering Method: Clustering Criterion and Agglomerative Algorithm

The Ward error sum of squares hierarchical clustering method has been very widely used since its first description by Ward in a 1963 publication. It has also been generalized in various ways. However there are different interpretations in the literature and there are different implementations of the Ward agglomerative algorithm in commonly used software systems, including differing expressions of the agglomerative criterion. Our survey work and case studies will be useful for all those involved in developing software for data analysis using Ward's hierarchical clustering method.Comment: 20 pages, 21 citations, 4 figure

Springtime sensible heat, nutrients and phytoplankton in the northwater Polynya, Canadian Arctic

Sampling was conducted in the Northwater Polynya (between 70°20' and 77°20'N), on 17 and 19 May 1991. At each of the 14 sampling stations, CTD profiles were recorded from surface to bottom and nutrients and phytoplankton were determined at four depths down to 30 m. The presence, between 220 and 400 m, of water temperatures > 0°C is an indication that, in winter, the West Greenland Current enters the Northwater along the Greenland coast. The worm water is progressively mixed as it moves northward and eastward. It was thus hypothesized that sensible heat is as an important factor in keeping the Northwater open. Measured chemical and biological variables were quite homogeneous on the vertical down to 30 m and they showed longitudinal gradients. From east to west, the average concentrations of nutrients increased (phosphate from 0.5 to 1.4, nitrate from 3.7 to 10.8, and silicate from 6.8 to 34.2 mmol/m3), whereas the areal concentrations of phytoplankton decreased (from 47 to 9 x 10 to the ninth power cells/m2 and from 506 to 50 mg Chla/m2). Nutrient ratios indicated possible silicon deficiency in the easternmost part of the polynya. Diatoms dominated cell numbers (greater or equal to 87% at all stations). Concentrations of the three nutrients were inversely correlated with both Chla and cell numbers. The Y-intercepts of regressions of Chla on nutrients provided an estimate of potential maximum biomass in the upper 30 m, which was ca. 600 mg Chla/m2, or lower if there was silicon limitation. The overall picture was that of a diatom bloom, moving westward and progressively exhausting the nutrients. Initiation of the bloom appeared to have been linked to the absence of sea ice. A source of heat for this would have been the above sensible-heat process. (Résumé d'auteur

In vitro expansion of U87-MG human glioblastoma cells under hypoxic conditions affects glucose metabolism and subsequent in vivo growth

Hypoxia is a characteristic feature of solid tumors leading to the over expression of hypoxia-inducible factor (HIF)-1α protein and therefore to a specific cellular behavior. However, even though the oxygen tension in tumors is low (<5 %), most of the cell lines used in cancer studies are grown under 21 % oxygen tension. This work focuses on the impact of oxygen conditions during in vitro cell culture on glucose metabolism using 1-13C-glucose. Growing U87-MG glioma cells under hypoxic conditions leads to a two- to threefold reduction of labeled glutamine and an accumulation of fructose. However, under both hypoxic and normoxic conditions, glucose is used for de novo synthesis of pyrimidine since the 13C label is found both in the uracil and ribose moieties. Labeling of the ribose ring demonstrates that U87-MG glioma cells use the reversible branch of the non-oxidative pentose phosphate pathway. Interestingly, stereotactic implantation of U87-MG cells grown under normoxia or mild hypoxia within the striatum of nude mice led to differential growth; the cells grown under hypoxia retaining an imprint of the oxygen adaptation as their development is then slowed down

Inflammation and changes in cytokine levels in neurological feline infectious peritonitis.

Feline infectious peritonitis (FIP) is a progressive, fatal, predominantly Arthus-type immune-mediated disease that is triggered when cats are infected with a mutant enteric coronavirus. The disease presents variably with multiple organ failure, seizures, generalized effusion, or shock. Neurological FIP is clinically and pathologically more homogeneous than systemic 'wet' or 'dry' FIP; thus, comparison of cytokine profiles from cats with neurological FIP, wet FIP, and non-FIP neurological disease may provide insight into some baseline characteristics relating to the immunopathogenesis of neurological FIP. This study characterizes inflammation and changes in cytokines in the brain tissue of FIP-affected cats. Cellular infiltrates in cats with FIP included lymphocytes, plasma cells, neutrophils, macrophages, and eosinophils. IL-1 beta, IL-6, IL-12, IL-18, TNF-alpha, macrophage inhibitory protein (MIP)-1 alpha, and RANTES showed no upregulation in the brains of control cats, moderate upregulation in neurological FIP cats, and very high upregulation in generalized FIP cats. Transcription of IFN-gamma appeared upregulated in cats with systemic FIP and slightly downregulated in neurological FIP. In most cytokines tested, variance was extremely high in generalized FIP and much less in neurological FIP. Principal components analysis was performed in order to find the least number of 'components' that would summarize the cytokine profiles in cats with neurological FIP. A large component of the variance (91.7%) was accounted for by levels of IL-6, MIP-1 alpha, and RANTES. These findings provide new insight into the immunopathogenesis of FIP and suggest targets for immune therapy of this disease

Impact of freshwater on a subarctic coastal ecosystem under seasonal sea ice (southeastern Hudson Bay, Canada) : 3. Feeding success of marine fish larvae

We monitored the feeding success (percent feeding incidence at length and mean feeding ratio at length) of Arctic cod (#Boreogadus saida) and sand lance (#Ammodytes sp. larvae in relation to prey density, light, temperature and potential predator density under the ice cover of southeastern Hudson Bay in the spring of 1988, 1989 and 1990. Both prey density and light limited larval fish feeding. The relationship between feeding success and actual food availability (nauplii density x irradiance) was adequately described by an Ivlev function which explained 64 and 76% of the variance in Arctic cod and sand lance feeding success respectively. By affecting both prey density and irradiance, the thickness of the Great Whale River plume (as defined by the depth of the 25 isohaline) was the main determinant of prey availability. Arctic cod and sand lance larvae stopped feeding when the depth of the 25 isohaline exceeded 9 m. Limitation of feeding success attributable to freshwater inputs occurred exclusively in 1988, the only time when the depth of the 25 isohaline exceeded the 9 m threshold. The close dependence of larval fish feeding success on the timing of the freshet and plume dynamics suggests a direct link between climate and survival of Arctic cod and sand lance larvae. The actual impact of climate fluctuations and/or hydro-electric developments on recruitment will depend on the fraction of the larval dispersal area of the two species that is affected by river plumes. (Résumé d'auteur

Growth responses of Ulva prolifera to inorganic and organic nutrients: Implications for macroalgal blooms in the southern Yellow Sea, China

International audienceThe marine macrophyte Ulva prolifera is the dominant green-tide-forming seaweed in the southern Yellow Sea, China. Here we assessed, in the laboratory, the growth rate and nutrient uptake responses of U. prolifera to different nutrient treatments. The growth rates were enhanced in incubations with added organic and inorganic nitrogen [i.e. nitrate (NO3−), ammonium (NH4+), urea and glycine] and phosphorus [i.e. phosphate (PO43−), adenosine triphosphate (ATP) and glucose 6-phosphate (G-6-P)], relative to the control. The relative growth rates of U. prolifera were higher when enriched with dissolved organic nitrogen (urea and glycine) and phosphorus (ATP and G-6-P) than inorganic nitrogen (NO3− and NH4+) and phosphorus (PO43−). In contrast, the affinity was higher for inorganic than organic nutrients. Field data in the southern Yellow Sea showed significant inverse correlations between macroalgal biomass and dissolved organic nutrients. Our laboratory and field results indicated that organic nutrients such as urea, glycine and ATP, may contribute to the development of macroalgal blooms in the southern Yellow Sea

Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia, Sarotherodon melanotheron heudelotii

The black-chinned tilapia Sarotherodon melanotheron heudelotii Ruppell 1852 (Teleostei, Cichlidae) displays remarkable acclimation capacities. When exposed to drastic changes of salinity, which can be the case in its natural habitat, it develops quick physiological responses and keeps reproducing. The present study focused on the physiological impact of salinity on male reproductive capacities, using gene expression as a proxy of acclimation process. Two series of experimental fish were investigated: the first one was composed of fish maintained in freshwater for several generations and newly acclimated to salinities of 35 and 70, whereas the second one consisted of the descendants of the latter born and were raised under their native salinity. Expression patterns of 43 candidate genes previously identified from the testes of wild males was investigated in the three salinities and two generations. Twenty of them showed significant expression differences between salinities, and their predicted function revealed that most of them are involved in the osmotic tolerance of sperm cells and/or in the maintenance of sperm motility. A high level of expression variation was evidenced, especially for fish maintained in freshwater. In spite of this, gene expression patterns allowed the differentiation between fish raised in freshwater and those maintained in hypersaline water in both generations. Altogether, the results presented here suggest that this high variability of expression is likely to ensure the reproductive success of this species under varying salinities