In-Situ TEM-STM Observations of SWCNT Ropes/Tubular Transformations

Single-walled carbon nanotubes (SWCNTs) prepared by the HiPco process were purified using a modified gas phase purification technique. A TEM-STM holder was used to study the morphological changes of SWCNT ropes as a function of applied voltage. Kink formation, buckling behavior, tubular transformation and eventual breakdown of the system were observed. The tubular formation was attributed to a transformation from SWCNT ropes to multi-walled carbon nanotube (MWCNT) structures. It is likely mediated by the patching and tearing mechanism which is promoted primarily by the mobile vacancies generated due to current-induced heating and, to some extent, by electron irradiation

The Arecibo Arp 220 Spectral Census I: Discovery of the Pre-Biotic Molecule Methanimine and New Cm-wavelength Transitions of Other Molecules

An on-going Arecibo line search between 1.1 and 10 GHz of the prototypical starburst/megamaser galaxy, Arp 220, has revealed a spectrum rich in molecular transitions. These include the ``pre-biotic'' molecules: methanimine (CH$_{2}$NH) in emission, three $v_{2}=1$ direct l-type absorption lines of HCN, and an absorption feature likely to be from either $^{18}$OH or formic acid (HCOOH). In addition, we report the detection of two, possibly three, transitions of $\lambda$4-cm excited OH not previously detected in Arp~220 which are seen in absorption, and a possible absorption feature from the 6.668-GHz line of methanol. This marks the first distant extragalactic detection of methanimine, a pre-biotic molecule. Also, if confirmed, the possible methanol absorption line presented here would represent the first extragalactic detection of methanol at a distance further than 10 Mpc. In addition, the strong, previously undetected, cm-wave HCN $v_{2}=1$ direct l-type lines will aid the study of dense molecular gas and active star-forming regions in this starburst galaxy.Comment: 25 pages, 10 figures. Accepted for publication in A

Physical Conditions in the Foreground Gas of Reflection Nebulae: NGC 2023, vdB 102, and NGC 7023

High resolution optical spectra of HD 37903 and HD 147009, which illuminate the reflection nebulae, NGC 2023 and vdB 102, were obtained for comparison with our results for HD 200775 and NGC 7023. Ground-based measurements of the molecules, CH, C$_2$, and CN, and the atoms, Na I and K I, were analyzed to extract physical conditions in the foreground cloud. Estimates of the gas density, gas temperature and flux of ultraviolet radiation were derived and were compared with the results from infrared and radio studies of the main molecular cloud. The conditions are similar to those found in studies of diffuse clouds. The foreground material is less dense than the gas in the molecular cloud behind the star(s). The gas temperature was set at 40 K, the temperature determined for the foreground gas in NGC 7023. The flux of ultraviolet radiation was found to be less intense than in the molecular material behind the star(s). The column densities of Na I and K I were reproduced reasonably well when the extinction curve for the specific line of sight was adopted. We obtained NEWSIPS data from the IUE archive for HD 37903 and HD 200775. The ultraviolet data on C I and CO allow extraction of the physical conditions by alternate methods. General agreement among the various diagnostics was found, leading to self-consistent pictures of the foreground photodissociation regions. An Appendix describes checks on the usefulness of IUE NEWSIPS data for interstellar studies. (Abridged)Comment: 65 pages, 18 tables, 14 figures, Accepted for publication in ApJ

Exposure to ambient particulate matter is associated with accelerated functional decline in idiopathic pulmonary fibrosis

BACKGROUND: Idiopathic pulmonary fibrosis (IPF), a progressive disease with an unknown pathogenesis, may be due in part to an abnormal response to injurious stimuli by alveolar epithelial cells. Air pollution and particulate inhalation of matter evoke a wide variety of pulmonary and systemic inflammatory diseases. We therefore hypothesized that increased average ambient particulate matter (PM) concentrations would be associated with an accelerated rate of decline in FVC in IPF. METHODS: We identified a cohort of subjects seen at a single university referral center from 2007 to 2013. Average concentrations of particulate matter < 10 and < 2.5 μg/m3 (PM10 and PM2.5, respectively) were assigned to each patient based on geocoded residential addresses. A linear multivariable mixed-effects model determined the association between the rate of decline in FVC and average PM concentration, controlling for baseline FVC at first measurement and other covariates. RESULTS: One hundred thirty-five subjects were included in the final analysis after exclusion of subjects missing repeated spirometry measurements and those for whom exposure data were not available. There was a significant association between PM10 levels and the rate of decline in FVC during the study period, with each μg/m3 increase in PM10 corresponding with an additional 46 cc/y decline in FVC (P = .008). CONCLUSIONS: Ambient air pollution, as measured by average PM10 concentration, is associated with an increase in the rate of decline of FVC in IPF, suggesting a potential mechanistic role for air pollution in the progression of disease

A Self-Absorption Census of Cold HI Clouds in the Canadian Galactic Plane Survey

We present a 21cm line HI self-absorption (HISA) survey of cold atomic gas within Galactic longitudes 75 to 146 degrees and latitudes -3 to +5 degrees. We identify HISA as spatially and spectrally confined dark HI features and extract it from the surrounding HI emission in the arcminute-resolution Canadian Galactic Plane Survey (CGPS). We compile a catalog of the most significant features in our survey and compare our detections against those in the literature. Within the parameters of our search, we find nearly all previously detected features and identify many new ones. The CGPS shows HISA in much greater detail than any prior survey and allows both new and previously-discovered features to be placed into the larger context of Galactic structure. In space and radial velocity, faint HISA is detected virtually everywhere that the HI emission background is sufficiently bright. This ambient HISA population may arise from small turbulent fluctuations of temperature and velocity in the neutral interstellar medium. By contrast, stronger HISA is organized into discrete complexes, many of which follow a longitude-velocity distribution that suggests they have been made visible by the velocity reversal of the Perseus arm's spiral density wave. The cold HI revealed in this way may have recently passed through the spiral shock and be on its way to forming molecules and, eventually, new stars. This paper is the second in a series examining HISA at high angular resolution. A companion paper (Paper III) describes our HISA search and extraction algorithms in detail.Comment: 44 pages, including 13 figure pages; to appear in June 10 ApJ, volume 626; figure quality significantly reduced for astro-ph; for full resolution, please see http://www.ras.ucalgary.ca/~gibson/hisa/cgps1_survey

Glastir Monitoring & Evaluation Programme. Second year annual report

What is the purpose of Glastir Monitoring and Evaluation Programme? Glastir is the main scheme by which the Welsh Government pays for environmental goods and services whilst the Glastir Monitoring and Evaluation Programme (GMEP) evaluates the scheme’s success. Commissioning of the monitoring programme in parallel with the launch of the Glastir scheme provides fast feedback and means payments can be modified to increase effectiveness. The Glastir scheme is jointly funded by the Welsh Government (through the Rural Development Plan) and the EU. GMEP will also support a wide range of other national and international reporting requirements. What is the GMEP approach? GMEP collects evidence for the 6 intended outcomes from the Glastir scheme which are focussed on climate change, water and soil quality, biodiversity, landscape, access and historic environment, woodland creation and management. Activities include; a national rolling monitoring programme of 1km squares; new analysis of long term data from other schemes combining with GMEP data where possible; modelling to estimate future outcomes so that adjustments can be made to maximise impact of payments; surveys to assess wider socio-economic benefits; and development of novel technologies to increase detection and efficiency of future assessments. How has GMEP progressed in this 2nd year? 90 GMEP squares were surveyed in Year 2 to add to the 60 completed in Year 1 resulting in 50% of the 300 GMEP survey squares now being completed. Squares will be revisited on a 4 year cycle providing evidence of change in response to Glastir and other pressures such as changing economics of the farm business, climate change and air pollution. This first survey cycle collects the baseline against which future changes will be assessed. This is important as GMEP work this year has demonstrated land coming into the scheme is different in some respects to land outside the scheme. Therefore, future analysis to detect impact of Glastir will be made both against the national backdrop from land outside the scheme and this baseline data from land in scheme. A wide range of analyses of longterm data has been completed for all Glastir Outcomes with the exception of landscape quality and historic features condition for which limited data is available. This has involved combining data with 2013/14 GMEP data when methods allow. Overall analysis of long term data indicates one of stability but with little evidence of improvement with the exception of headwater quality, greenhouse gas emissions and woodland area for which there has been improvement over the last 20 years. Some headline statistics include: 51% of historic features in excellent or sound condition; two thirds of public rights of way fully open and accessible; improvement in hedgerow management with 85% surveyed cut in the last 3 years but < 1% recently planted; 91% of streams had some level of modification but 60% retained good ecological quality; no change topsoil carbon content over last 25 years. What is innovative? GMEP has developed various new metrics to allow for more streamlined reporting in the future. For example a new Priority Bird species Index for Wales which combines data from 35 species indicates at least half have stable or increasing populations. The new GMEP Visual Quality Landscape Index has been tested involving over 2600 respondents. Results have demonstrated its value as an objective and repeatable method for quantifying change in visual landscape quality. A new unified peat map for Wales has been developed which has been passed to Glastir Contract Managers to improve targeting of payments when negotiating Glastir contracts. An estimate of peat soil contribution to current greenhouse gas emissions due to human modification has been calculated. Models have allowed quantification of land area helping to mitigate rainfall runoff. We are using new molecular tools to explore the effects of Glastir on soil organisms and satellite technologies to quantify e.g. small woody features and landcover change. Finally we are using a community approach to develop a consensus on how to define and report change in High Nature Value Farmland which will be reported in the Year 3 GMEP report

Nonviral Approaches for Neuronal Delivery of Nucleic Acids

The delivery of therapeutic nucleic acids to neurons has the potential to treat neurological disease and spinal cord injury. While select viral vectors have shown promise as gene carriers to neurons, their potential as therapeutic agents is limited by their toxicity and immunogenicity, their broad tropism, and the cost of large-scale formulation. Nonviral vectors are an attractive alternative in that they offer improved safety profiles compared to viruses, are less expensive to produce, and can be targeted to specific neuronal subpopulations. However, most nonviral vectors suffer from significantly lower transfection efficiencies than neurotropic viruses, severely limiting their utility in neuron-targeted delivery applications. To realize the potential of nonviral delivery technology in neurons, vectors must be designed to overcome a series of extra- and intracellular barriers. In this article, we describe the challenges preventing successful nonviral delivery of nucleic acids to neurons and review strategies aimed at overcoming these challenges

Enhancement of Allele Discrimination by Introduction of Nucleotide Mismatches into siRNA in Allele-Specific Gene Silencing by RNAi

Allele-specific gene silencing by RNA interference (RNAi) is therapeutically useful for specifically inhibiting the expression of disease-associated alleles without suppressing the expression of corresponding wild-type alleles. To realize such allele-specific RNAi (ASP-RNAi), the design and assessment of small interfering RNA (siRNA) duplexes conferring ASP-RNAi is vital; however, it is also difficult. In a previous study, we developed an assay system to assess ASP-RNAi with mutant and wild-type reporter alleles encoding the Photinus and Renilla luciferase genes. In line with experiments using the system, we realized that it is necessary and important to enhance allele discrimination between mutant and corresponding wild-type alleles. Here, we describe the improvement of ASP-RNAi against mutant alleles carrying single nucleotide variations by introducing base substitutions into siRNA sequences, where original variations are present in the central position. Artificially mismatched siRNAs or short-hairpin RNAs (shRNAs) against mutant alleles of the human Prion Protein (PRNP) gene, which appear to be associated with susceptibility to prion diseases, were examined using this assessment system. The data indicates that introduction of a one-base mismatch into the siRNAs and shRNAs was able to enhance discrimination between the mutant and wild-type alleles. Interestingly, the introduced mismatches that conferred marked improvement in ASP-RNAi, appeared to be largely present in the guide siRNA elements, corresponding to the ‘seed region’ of microRNAs. Due to the essential role of the ‘seed region’ of microRNAs in their association with target RNAs, it is conceivable that disruption of the base-pairing interactions in the corresponding seed region, as well as the central position (involved in cleavage of target RNAs), of guide siRNA elements could influence allele discrimination. In addition, we also suggest that nucleotide mismatches at the 3′-ends of sense-strand siRNA elements, which possibly increase the assembly of antisense-strand (guide) siRNAs into RNA-induced silencing complexes (RISCs), may enhance ASP-RNAi in the case of inert siRNA duplexes. Therefore, the data presented here suggest that structural modification of functional portions of an siRNA duplex by base substitution could greatly influence allele discrimination and gene silencing, thereby contributing to enhancement of ASP-RNAi