A Statistical Analysis of RNA Folding Algorithms Through Thermodynamic Parameter Perturbation

Computational RNA secondary structure prediction is rather well established. However, such prediction algorithms always depend on a large number of experimentally measured parameters. Here, we study how sensitive structure prediction algorithms are to changes in these parameters. We find that already for changes corresponding to the actual experimental error to which these parameters have been determined 30% of the structure are falsly predicted and the ground state structure is preserved under parameter perturbation in only 5% of all cases. We establish that base pairing probabilities calculated in a thermal ensemble are a viable though not perfect measure for the reliability of the prediction of individual structure elements. A new measure of stability using parameter perturbation is proposed, and its limitations discussed.Comment: 6 pages, 3 figures, 1 table submitted to Nucleic Acids Researc

New concept in brazing metallic honeycomb panels

Aluminum oxide coating provides surface which will not be wetted by brazing alloy and which stops metallic diffusion welding of tooling materials to part being produced. This method eliminates loss of tooling materials and parts from braze wetting and allows fall-apart disassembly of tooling after brazing

A Method for Determining Offtracking of Multiple Unit Vehicle Combinations

The required road width around curves on forest roads is largely determined by the difference in wheel paths between the inside front tractor wheel and the inside rear trailer wheel. This difference, known as offtracking, is a function of the vehicle and road geometry. This paper presents a method for determining the offtracking of fixed and variable length multiple unit vehicle combinations travelling over forest roads. The computational method numerically integrates the differential equations which compute the path (tractrix) that the rear of a vehicle follows from a given steering curve. A unique three-point solution method is used to determine the instantaneous center of rotation for trailers in the vehicle combination. The method is shown to have good agreement with experimental data. It is suitable for use on microcomputers for single and multiple curves. A microcomputer program, OFFTRACK, was developed using this methodology

Accidental Releases of Sour Gas From Wells and Collection Pipelines in the Overthrust Belt: Calculating and Assessing Potential Health and Environmental Risks

Parts of the Overthrust Belt of western Wyoming and adjoining areas in Utah and Idaho contain geologic formations with significant accumulations of oil and natural gas. Some of these formations, though, yield gas that is contaminated with toxic hydrogen sulfide. As a consequence, the development of these so-called sour-gas reservoirs requires special safety procedures and technologies in order to prevent accidental releases of gas to the atmosphere that could cause adverse occupational and public health effects. To improve the analysis and assessment of wells and collection pipelines completed on lands leased from the Federal Government, the Minerals Management Service, Onshore Operations, now part of the Bureau of Land Management (BLM), asked Lawrence Livermore National Laboratory to conduct a study to test methods to the analysis of the potential risks associated with the development of sour-gas resources located near Evanston, Wyoming. The process of assessing the health risks of a potential sour-gas release involves estimation of the emission rate of hydrogen sulfide, specification of how the gas is released (e.g., vertically into the atmosphere or horizontally), prediction of downwind concentrations of the gas, analysis of the potential health effects, and finally, review of safety methods required to minimize the potential health risks. The first part of the report includes an analysis of data on the health effects of hydrogen sulfide to determine the nature of its dose-response relationship. Following that review is a study of the different methods of quantifying the emission rate of gas from wells and pipelines. Data on the frequency of accidental releases from those facilities are also analyzed. To assess the health risks of an accidental release from a well under BLM supervision located near Evanston, we collected meteorological data for 1 yr from four stations in that area. Our analysis of a worst-case release scenario (i.e., a gas plume that is near the surface) using those data indicates that the greatest risks of incurring an acute health effect (e.g., unconsciousness, respiratory arrest, pulmonary edema, or death) are located in the northwest sector downwind from the well because of the occurrence of stable atmospheric conditions along with slow winds from the southeast. The risks of an acute health effect in that northwest sector over the 20-yr operation of the well were on the order of 10 -4 to 10 -5 -- similar to the risk of accidental death caused by a natural disaster over the same period

Diversity Exiting the Academy: Influential Factors for the Career Choice of Well-Represented and Underrepresented Minority Scientists

A national sample of PhD-trained scientists completed training, accepted subsequent employment in academic and nonacademic positions, and were queried about their previous graduate training and current employment. Respondents indicated factors contributing to their employment decision (e.g., working conditions, salary, job security). The data indicate the relative importance of deciding factors influencing career choice, controlling for gender, initial interest in faculty careers, and number of postgraduate publications. Among both well-represented (WR; n = 3444) and underrepresented minority (URM; n = 225) respondents, faculty career choice was positively associated with desire for autonomy and partner opportunity and negatively associated with desire for leadership opportunity. Differences between groups in reasons endorsed included: variety, prestige, salary, family influence, and faculty advisor influence. Furthermore, endorsement of faculty advisor or other mentor influence and family or peer influence were surprisingly rare across groups, suggesting that formal and informal support networks could provide a missed opportunity to provide support for trainees who want to stay in faculty career paths. Reasons requiring alteration of misperceptions (e.g., limited leadership opportunity for faculty) must be distinguished from reasons requiring removal of actual barriers. Further investigation into factors that affect PhDs’ career decisions can help elucidate why URM candidates are disproportionately exiting the academy

Time evolution, cyclic solutions and geometric phases for general spin in an arbitrarily varying magnetic field

A neutral particle with general spin and magnetic moment moving in an arbitrarily varying magnetic field is studied. The time evolution operator for the Schr\"odinger equation can be obtained if one can find a unit vector that satisfies the equation obeyed by the mean of the spin operator. There exist at least $2s+1$ cyclic solutions in any time interval. Some particular time interval may exist in which all solutions are cyclic. The nonadiabatic geometric phase for cyclic solutions generally contains extra terms in addition to the familiar one that is proportional to the solid angle subtended by the closed trace of the spin vector.Comment: revtex4, 8 pages, no figur

The role of pathology in an investigation of an outbreak of West Nile encephalitis in New York, 1999.

An outbreak of encephalitis occurred in New York City in late August 1999, the first caused by West Nile virus in North America. Histopathologic and immunopathologic examinations performed on human autopsy materials helped guide subsequent laboratory and epidemiologic investigations that led to identification of the etiologic agent

Political mobilisation by minorities in Britain: negative feedback of ‘race relations'?

This article uses a political opportunity approach to study the relationship of minority groups to the political community in Britain. The main argument is that the British race relations approach established in the 1960s had an important effect that still shapes the patterns of political contention by different minority groups today. Original data on political claims-making by minorities demonstrate that British 'racialised' cultural pluralism has structured an inequality of opportunities for the two main groups, African-Caribbeans and Indian subcontinent minorities. African-Caribbeans mobilise along racial lines, use a strongly assimilative 'black' identity, conventional action forms, and target state institutions with demands for justice that are framed within the recognised framework of race relations. Conversely, a high proportion of the Indian subcontinent minority mobilisation is by Muslim groups, a non-assimilative religious identity. These are autonomously organised, but largely make public demands for extending the principle of racial equality to their non-racial group. Within the Indian subcontinent minorities, the relative absence of mobilisation by Indian, Sikh and Hindu minorities, who have achieved much better levels of socio-economic success than Pakistani and Bangladeshi Muslims, suggests that there is also a strong socioeconomic basis for shared experiences and grievances as Muslims in Britain. This relativises the notion that Muslim mobilisation is Britain is purely an expression of the right for cultural difference per se, and sees it as a product of the paradoxes of British race relations

Ion acoustic wave experiments in a high school plasma physics laboratory

We describe a successful alliance between a university and several high schools. The alliance is centered on a laboratory experiment constructed by students and faculty. The experiment involves sophisticated concepts and equipment not readily available in high schools. Much of the experiment is directly related to the science and mathematics learned in high school, with opportunities to extend their understanding by applying it to a research experience. The experiment is in plasma physics, but a similar alliance can be implemented in any area of science. Although the number of high school students affected by any one alliance is small, the impact is potentially large in the scientific life of a participating student or teacher