Role of (p)ppGpp in Viability and Biofilm Formation of Actinobacillus pleuropneumoniae S8.

Actinobacillus pleuropneumoniae is a Gram-negative bacterium and the cause of porcine pleuropneumonia. When the bacterium encounters nutritional starvation, the relA-dependent (p)ppGpp-mediated stringent response is activated. The modified nucleotides guanosine 5'-diphosphate 3'-diphosphate (ppGpp) and guanosine 5'-triphosphate 3'-diphosphate (pppGpp) are known to be signaling molecules in other prokaryotes. Here, to investigate the role of (p)ppGpp in A. pleuropneumoniae, we created a mutant A. pleuropneumoniae strain, S8ΔrelA, which lacks the (p)ppGpp-synthesizing enzyme RelA, and investigated its phenotype in vitro. S8ΔrelA did not survive after stationary phase (starvation condition) and grew exclusively as non-extended cells. Compared to the wild-type (WT) strain, the S8ΔrelA mutant had an increased ability to form a biofilm. Transcriptional profiles of early stationary phase cultures revealed that a total of 405 bacterial genes were differentially expressed (including 380 up-regulated and 25 down-regulated genes) in S8ΔrelA as compared with the WT strain. Most of the up-regulated genes are involved in ribosomal structure and biogenesis, amino acid transport and metabolism, translation cell wall/membrane/envelope biogenesis. The data indicate that (p)ppGpp coordinates the growth, viability, morphology, biofilm formation and metabolic ability of A. pleuropneumoniae in starvation conditions. Furthermore, S8ΔrelA could not use certain sugars nor produce urease which has been associated with the virulence of A. pleuropneumoniae, suggesting that (p)ppGpp may directly or indirectly affect the pathogenesis of A. pleuropneumoniae during the infection process. In summary, (p)ppGpp signaling represents an essential component of the regulatory network governing stress adaptation and virulence in A. pleuropneumoniae

Choice of Measurement Sets in Qubit Tomography

Optimal generalized measurements for state estimation are well understood. However, practical quantum state tomography is typically performed using a fixed set of projective measurements and the question of how to choose these measurements has been largely unexplored in the literature. In this work we develop theoretical asymptotic bounds for the average fidelity of pure qubit tomography using measurement sets whose axes correspond to vertices of Platonic solids. We also present complete simulations of maximum likelihood tomography for mixed qubit states using the Platonic solid measurements. We show that overcomplete measurement sets can be used to improve the accuracy of tomographic reconstructions.Comment: 13 Pages, 6 figure

Memory texts and memory work: Performances of memory in and with visual media

The online version of this article can be found at: http://mss.sagepub.com/content/early/2010/05/24/175069801037003

Fast Neutron Detection with a Segmented Spectrometer

A fast neutron spectrometer consisting of segmented plastic scintillator and He-3 proportional counters was constructed for the measurement of neutrons in the energy range 1 MeV to 200 MeV. We discuss its design, principles of operation, and the method of analysis. The detector is capable of observing very low neutron fluxes in the presence of ambient gamma background and does not require scintillator pulseshape discrimination. The spectrometer was characterized for its energy response in fast neutron fields of 2.5 MeV and 14 MeV, and the results are compared with Monte Carlo simulations. Measurements of the fast neutron flux and energy response at 120 m above sea-level (39.130 deg. N, 77.218 deg. W) and at a depth of 560 m in a limestone mine are presented. Finally, the design of a spectrometer with improved sensitivity and energy resolution is discussed.Comment: 15 pages, 9 figures, published in NIM

Volume-preserving normal forms of Hopf-zero singularity

A practical method is described for computing the unique generator of the algebra of first integrals associated with a large class of Hopf-zero singularity. The set of all volume-preserving classical normal forms of this singularity is introduced via a Lie algebra description. This is a maximal vector space of classical normal forms with first integral; this is whence our approach works. Systems with a non-zero condition on their quadratic parts are considered. The algebra of all first integrals for any such system has a unique (modulo scalar multiplication) generator. The infinite level volume-preserving parametric normal forms of any non-degenerate perturbation within the Lie algebra of any such system is computed, where it can have rich dynamics. The associated unique generator of the algebra of first integrals are derived. The symmetry group of the infinite level normal forms are also discussed. Some necessary formulas are derived and applied to appropriately modified R\"{o}ssler and generalized Kuramoto--Sivashinsky equations to demonstrate the applicability of our theoretical results. An approach (introduced by Iooss and Lombardi) is applied to find an optimal truncation for the first level normal forms of these examples with exponentially small remainders. The numerically suggested radius of convergence (for the first integral) associated with a hypernormalization step is discussed for the truncated first level normal forms of the examples. This is achieved by an efficient implementation of the results using Maple