Recovery trends of reef carbonate budgets at remote coral atolls 6 years post-bleaching (article)

This is the final version. Available on open access from Wiley via the DOI in this recordThe data associated with this article is available in ORE at https://doi.org/10.24378/exe.3863Coral bleaching events and resultant changes in benthic community composition and population size structure can diminish the important geo-ecological functions reefs provide, including habitat provision and carbonate production to support reef accretion. Net reef carbonate budgets, the balance between carbonate production and erosion processes, are thus important functional indicators of reef health. This study quantifies changes in coral community composition and colony size structures, and the resultant reef carbonate budget trajectories after the 2015/2016 bleaching event in the remote Chagos Archipelago, Indian Ocean. ReefBudget surveys were conducted at 12 sites across three atolls in 2015, 2018 and 2021, with calculations of biological carbonate production and erosion supported by locally obtained calcification and bioerosion rates. Carbonate budgets (in G = kg CaCO3 m-2 yr-1) shifted from net positive states in 2015 (mean±SD: 3.8±2.6 G) to net negative states in 2018 (-2.4±1.4 G) in response to bleaching-driven mass coral mortality. By 2021, all sites were on a trajectory of recovery, but net budgets differed significantly between atolls (-2.0±1.7 to 2.2±1.4 G). At Salomon atoll, the 3-fold faster recovery of carbonate production and return to positive reef budget states only six years post-bleaching was associated with the persistence of high structural complexity and the rapid recovery of fast growing tabular Acropora spp. Inter-atoll differences in colony size distributions furthermore illustrate that coral identity and size class are more important predictors of reef functions and post-disturbance recovery speed than coral cover alone.Bertarelli Foundatio

Carbonate budgets as indicators of functional reef “health”: a critical review of data underpinning census-based methods and current knowledge gaps

This is the author accepted manuscript. The final version is available from Elsevier via the DOI in this record.The carbonate budget of a reef describes the net rate of carbonate production resulting from various biologically-, physically- and chemically-driven production and erosion processes. Thus, budget state metrics can provide important information on a reef’s growth potential and on the capacity of reefs to sustain key geo-ecological services such as habitat provision and coastal protection. Whilst various approaches for estimating carbonate budgets exist, census-based methods have gained recent interest because they quantify the contribution of different functional groups and taxa, and allow assessments of the links between changing reef ecology and budget states. However, the present paucity of supporting data on growth and erosion rates for the majority of coral species and reef-associated taxa represents a constraint on these budget estimates and limits meaningful between-site comparisons. In light of the growing interest in using carbonate budgets as a functional reef “health” assessment tool, this review thus considers our current state of knowledge regarding the geographic coverage of existing reef budget states and the availability of relevant supporting data. We use this to highlight current knowledge gaps, future challenges, and opportunities that emerging techniques may offer. The primary aim of this review is to encourage increased research efforts on budget states and underlying metrics in order to better constrain reef carbonate budget estimates from across a broad range of sites and environments.Bertarelli FoundationRoyal Societ

Bleaching-driven reef community shifts drive pulses of increased reef sediment generation

This is the final version. Available on open access from the Royal Society via the DOI in this recordData accessibility: Benthic ecological data, and parrotfish abundance and biomass data used in this study are deposited at the Dryad Digital Repository: https://doi.org/10.5061/dryad.08kprr4zcThe ecological impacts of coral bleaching on reef communities are well documented, but resultant impacts upon reef-derived sediment supply are poorly quantified. This is an important knowledge gap because these biogenic sediments underpin shoreline and reef island maintenance. Here, we explore the impacts of the 2016 bleaching event on sediment generation by two dominant sediment producers (parrotfish and Halimeda spp.) on southern Maldivian reefs. Our data identifies two pulses of increased sediment generation in the 3 years since bleaching. The first occurred within approximately six months after bleaching as parrotfish biomass and resultant erosion rates increased, probably in response to enhanced food availability. The second pulse occurred 1 to 3 years post-bleaching, after further increases in parrotfish biomass and a major (approx. fourfold) increase in Halimeda spp. abundance. Total estimated sediment generation from these two producers increased from approximately 0.5 kg CaCO3 m−2 yr−1 (pre-bleaching; 2016) to approximately 3.7 kg CaCO3 m−2 yr−1 (post-bleaching; 2019), highlighting the strong links between reef ecology and sediment generation. However, the relevance of this sediment for shoreline maintenance probably diverges with each producer group, with parrotfish-derived sediment a more appropriate size fraction to potentially contribute to local island shorelines.Leverhulme TrustBertarelli Foundatio

Structure-from-motion photogrammetry demonstrates variability in coral growth within colonies and across habitats

This is the final version. Available from Public Library of Science via the DOI in this record. Data Availability Statement: The raw data table is available from the University of Exeter Repository ORE at https://doi.org/10.24378/exe.4285Coral growth is an important metric of coral health and underpins reef-scale functional attributes such as structural complexity and calcium carbonate production. There persists, however, a paucity of growth data for most reef-building regions, especially for coral species whose skeletal architecture prevents the use of traditional methods such as coring and Alizarin staining. We used structure-from-motion photogrammetry to quantify a range of colony-scale growth metrics for six coral species in the Mexican Caribbean and present a newly developed workflow to measure colony volume change over time. Our results provide the first growth metrics for two species that are now major space occupiers on Caribbean reefs, Agaricia agaricites and Agaricia tenuifolia. We also document higher linear extension, volume increase and calcification rates within back reef compared to fore reef environments for four other common species: Orbicella faveolata, Porites astreoides, Siderastrea siderea and Pseudodiploria strigosa. Linear extension rates in our study were lower than those obtained via computed tomography (CT) scans of coral cores from the same sites, as the photogrammetry method averages growth in all dimensions, while the CT method depicts growth only along the main growth axis (upwards). The comparison of direct volume change versus potential volume increase calculated from linear extension emphasizes the importance of assessing whole colony growth to improve calcification estimates. The method presented here provides an approach that can generate accurate calcification estimates alongside a range of other whole-colony growth metrics in a non-invasive way.British Ecological Societ

Coral restoration can drive rapid reef carbonate budget recovery (article)

This is the final version. Available on open access from Cell Press via the DOI in this recordMaterials availability: This study did not generate new unique reagents.Data and code availability: All data and original code supporting the findings in this paper are publicly available on GitHub (https://github.com/InesLange/reef-restoration-carbonate-budgets). Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.The dataset associated with this article is available in ORE at: https://doi.org/10.24378/exe.5065Restoration is increasingly seen as a necessary tool to reverse ecological decline across terrestrial and marine ecosystems.1,2 Considering the unprecedented loss of coral cover and associated reef ecosystem services, active coral restoration is gaining traction in local management strategies and has recently seen major increases in scale. However, the extent to which coral restoration may restore key reef functions is poorly understood.3,4 Carbonate budgets, defined as the balance between calcium carbonate production and erosion, influence a reef’s ability to provide important geo-ecological functions including structural complexity, reef framework production, and vertical accretion.5 Here we present the first assessment of reef carbonate budget trajectories at restoration sites. The study was conducted at one of the world’s largest coral restoration programs, which transplants healthy coral fragments onto hexagonal metal frames to consolidate degraded rubble fields.6 Within 4 years, fast coral growth supports a rapid recovery of coral cover (from 17% ± 2% to 56% ± 4%), substrate rugosity (from 1.3 ± 0.1 to 1.7 ± 0.1) and carbonate production (from 7.2 ± 1.6 to 20.7 ± 2.2 kg m−2 yr−1). Four years after coral transplantation, net carbonate budgets have tripled and are indistinguishable from healthy control sites (19.1 ± 3.1 and 18.7 ± 2.2 kg m−2 yr−1, respectively). However, taxa-level contributions to carbonate production differ between restored and healthy reefs due to the preferential use of branching corals for transplantation. While longer observation times are necessary to observe any self-organization ability of restored reefs (natural recruitment, resilience to thermal stress), we demonstrate the potential of large-scale, well-managed coral restoration projects to recover important ecosystem functions within only 4 years.1851 Royal CommissionFisheries Society of the British IslesBertarelli Program in Marine Scienc

Long term (5 Year) safety of bronchial thermoplasty: Asthma Intervention Research (AIR) trial

<b>Background:</b> Bronchial thermoplasty (BT) is a bronchoscopic procedure that improves asthma control by reducing excess airway smooth muscle. Treated patients have been followed out to 5 years to evaluate long-term safety of this procedure. <br></br> <br></br> <b>Methods:</b> Patients enrolled in the Asthma Intervention Research Trial were on inhaled corticosteroids ≥200 μg beclomethasone or equivalent + long-acting-beta2-agonists and demonstrated worsening of asthma on long-acting-β2-agonist withdrawal. Following initial evaluation at 1 year, subjects were invited to participate in a 4 year safety study. Adverse events (AEs) and spirometry data were used to assess long-term safety out to 5 years post-BT. <br></br> <br></br> <b>Results:</b> 45 of 52 treated and 24 of 49 control group subjects participated in long-term follow-up of 5 years and 3 years respectively. The rate of respiratory adverse events (AEs/subject) was stable in years 2 to 5 following BT (1.2, 1.3, 1.2, and 1.1, respectively,). There was no increase in hospitalizations or emergency room visits for respiratory symptoms in Years 2, 3, 4, and 5 compared to Year 1. The FVC and FEV1 values showed no deterioration over the 5 year period in the BT group. Similar results were obtained for the Control group. <br></br><br></br> <b>Conclusions:</b> The absence of clinical complications (based on AE reporting) and the maintenance of stable lung function (no deterioration of FVC and FEV1) over a 5-year period post-BT in this group of patients with moderate to severe asthma support the long-term safety of the procedure out to 5 years

Lymph Node Negative Colorectal Cancers with Isolated Tumor Deposits Should Be Classified and Treated As Stage III

BACKGROUND: The prognostic role of pericolic or perirectal isolated tumor deposits (ITDs) in node-negative colorectal cancer (CRC) patients is unclear. Rules to define ITDs as regional lymph node metastases changed in subsequent editions of the TNM staging without substantial evidence. Aim of this study was to investigate the correlation between ITDs and disease recurrence in stage II and III CRC patients. MATERIALS AND METHODS: The medical files of 870 CRC patients were reviewed. Number, size, shape, and location pattern of all ITDs in node-negative patients were examined in relation to involvement of vascular structures and nerves. The correlation between ITDs and the development of recurrent disease was investigated. RESULTS: Disease recurrence was observed in 50.0% of stage II patients with ITDs (13 of 26), compared with 24.4% of stage II patients without ITDs (66 of 270) (P <.01). Disease-free survival of ITD-positive stage II patients was comparable with that of stage III patients. Also within stage III, more recurrences were observed in ITD-positive patients compared with ITD-negative patients (65.1 vs. 39.1%, respectively). No correlation was found between size of ITDs and disease recurrence. More recurrences were seen in patients with irregularly shaped ITDs compared with patients with 1 or more smooth ITDs present. CONCLUSIONS: Because of the high risk of disease recurrence, all node-negative stage II patients with ITDs, regardless of size and shape, should be classified as stage III, for whom adjuvant chemotherapy should be considere

Treatment responses in multidrug-resistant tuberculosis in Germany.

BACKGROUND: Excellent treatment outcomes have recently been reported for patients with multi/extensively drug-resistant tuberculosis (M/XDR-TB) in settings where optimal resources for individualised therapy are available. OBJECTIVE: To ascertain whether differences remain in treatment responses between patients with M/XDR-TB and those with non-M/XDR-TB. METHOD: Patients with TB were prospectively enrolled between March 2013 and March 2016 at five hospitals in Germany. Treatment was conducted following current guidelines and individualised on the basis of drug susceptibility testing. Two-month and 6-month sputum smear and sputum culture conversion rates were assessed. A clinical and radiological score were used to assess response to anti-tuberculosis treatment. RESULTS: Non-M/XDR-TB (n = 29) and M/XDR-TB (n = 46) patients showed similar rates of microbiological conversion: 2-month smear conversion rate, 90% vs. 78%; culture conversion rate, 67% vs. 61%; time to smear conversion, 19 days (IQR 10-32) vs. 31 days (IQR 14-56) (P = 0.066); time to culture conversion, 39 days (IQR 17-67) vs. 39 days (IQR 6-85) (P = 0.191). Both clinical and radiological scores decreased after the introduction of anti-tuberculosis treatment. CONCLUSION: There were no significant differences in scores between the two groups until 6 months of treatment. Under optimal clinical conditions, with the availability of novel diagnostics and a wide range of therapeutic options for individualised treatment, patients with M/XDR-TB achieved 6-month culture conversion rates that were compatible with those in patients with non-M/XDR-TB

Choline transporter gene variation is associated with attention-deficit hyperactivity disorder

The neurotransmitter acetylcholine (ACh) plays a critical role in brain circuits mediating motor control, attention, learning and memory. Cholinergic dysfunction is associated with multiple brain disorders including Alzheimer’s Disease, addiction, schizophrenia and Attention-Deficit Hyperactivity Disorder (ADHD). The presynaptic choline transporter (CHT, SLC5A7) is the major, rate-limiting determinant of ACh production in the brain and periphery and is consequently upregulated during tasks that require sustained attention. Given the contribution of central cholinergic circuits to the control of movement and attention, we hypothesized that functional CHT gene variants might impact risk for ADHD. We performed a case-control study, followed by family-based association tests on a separate cohort, of two purportedly functional CHT polymorphisms (coding variant Ile89Val (rs1013940) and a genomic SNP 3’ of the CHT gene (rs333229), affording both a replication sample and opportunities to reduce potential population stratification biases. Initial genotyping of pediatric ADHD subjects for two purportedly functional CHT alleles revealed a 2–3 fold elevation of the Val89 allele (n = 100; P = 0.02) relative to healthy controls, as well as a significant decrease of the 3’SNP minor allele in Caucasian male subjects (n = 60; P = 0.004). In family based association tests, we found significant overtransmission of the Val89 variant to children with a Combined subtype diagnosis (OR = 3.16; P = 0.01), with an increased Odds Ratio for a haplotype comprising both minor alleles. These studies show evidence of cholinergic deficits in ADHD, particularly for subjects with the Combined subtype, and, if replicated, may encourage further consideration of cholinergic agonist therapy in the disorder