Enucleation of Buffalo Oocytes: A Comparison of Methods

A comparative study of three enucleation methods; enucleation by pushing out small amount of cytoplasm beneath the first polar body, enucleation by bisectioning of oocytes, and enucleation by aspiration were carried out using the oocytes of Indian buffaloes. The statistical analysis of the results revealed that, there is no significant difference between the three enucleation methods. This information would be helpful for optimization of enucleation of recipient oocyte during somatic cell nuclear transfer

Prevalence, Isolation, Characterisation and Antibiogram Study of Pathogenic Escherichia coli from Different Poultry Farms of Odisha

From 182 birds of different farms of odisha suspected for colibacillosis 317 swab samples containing 51 air sacs, 39 lungs, 53 livers, 36 heart bloods, 45 pericardial fluids, 19 yolk sacs and 74 intestine samples were processed for isolation and identification of pathogenic E. coli. and subjected to detail bacteriological and biochemical examination in the laboratory and 105 E. coli isolates were isolated following standard procedures. The percentage of isolation of E. coli isolates in decreasing order was yolk sac (52.6%) and heart blood (38.4%) in 0-4 week birds. In older birds (4-7week) the highest percentage of isolation was from pericardial fluid (35.8%) followed by heart blood (33.4%). The present study showed that the frequency of occurrence of O9 strain is highest (16.7%) followed by O1, O33 & O51 (13.3%), O23 & O119 (10%), O103 & 79 (6.7%) and serotype O90 (3.3%). The antibiogram study reveals that, E. coli isolates found were highly resistant to some of the classical drugs like chlortetracycline (88.58%), streptomycin (85.72%), penicillin-G (82.86%), amikacin (82.86%), furazolidone (77.14%), ampicillin (74.29%), Tetracycline(74.29%), Amoxicillin (71.43%) and cotrimoxazole (71.43%), while isolates were highly sensitive to ceftriaxone and tazobactum (94.29%), ceftriaxone (91.43%), gentamicin (85.72%), chloromphenicol (82.67%), cephotaxime (77.14%), cefixime (74.29%) and ciprofloxacin (74.29%)

Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells

Peste des petits ruminanats virus (PPRV), a morbillivirus causes an acute, highly contagious disease – peste des petits ruminants (PPR), affecting goats and sheep. Sungri/96 vaccine strain is widely used for mass vaccination programs in India against PPR and is considered the most potent vaccine providing long-term immunity. However, occurrence of outbreaks due to emerging PPR viruses may be a challenge. In this study, the temporal dynamics of immune response in goat peripheral blood mononuclear cells (PBMCs) infected with Sungri/96 vaccine virus was investigated by transcriptome analysis. Infected goat PBMCs at 48 h and 120 h post infection revealed 2540 and 2000 differentially expressed genes (DEGs), respectively, on comparison with respective controls. Comparison of the infected samples revealed 1416 DEGs to be altered across time points. Functional analysis of DEGs reflected enrichment of TLR signaling pathways, innate immune response, inflammatory response, positive regulation of signal transduction and cytokine production. The upregulation of innate immune genes during early phase (between 2-5 days) viz. interferon regulatory factors (IRFs), tripartite motifs (TRIM) and several interferon stimulated genes (ISGs) in infected PBMCs and interactome analysis indicated induction of broad-spectrum anti-viral state. Several Transcription factors – IRF3, FOXO3 and SP1 that govern immune regulatory pathways were identified to co-regulate the DEGs. The results from this study, highlighted the involvement of both innate and adaptive immune systems with the enrichment of complement cascade observed at 120 h p.i., suggestive of a link between innate and adaptive immune response. Based on the transcriptome analysis and qRT-PCR validation, an in vitro mechanism for the induction of ISGs by IRFs in an interferon independent manner to trigger a robust immune response was predicted in PPRV infection

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Enucleation of Buffalo Oocytes: A Comparison of Methods

A comparative study of three enucleation methods; enucleation by pushing out small amount of cytoplasm beneath the first polar body, enucleation by bisectioning of oocytes, and enucleation by aspiration were carried out using the oocytes of Indian buffaloes. The statistical analysis of the results revealed that, there is no significant difference between the three enucleation methods. This information would be helpful for optimization of enucleation of recipient oocyte during somatic cell nuclear transfer

Poly- and Perfluoroalkyl Substances (PFAS): Do They Matter to Aquatic Ecosystems?

Poly- and perfluoroalkyl substances (PFASs) are a group of anthropogenic chemicals with an aliphatic fluorinated carbon chain. Due to their durability, bioaccumulation potential, and negative impacts on living organisms, these compounds have drawn lots of attention across the world. The negative impacts of PFASs on aquatic ecosystems are becoming a major concern due to their widespread use in increasing concentrations and constant leakage into the aquatic environment. Furthermore, by acting as agonists or antagonists, PFASs may alter the bioaccumulation and toxicity of certain substances. In many species, particularly aquatic organisms, PFASs can stay in the body and induce a variety of negative consequences, such as reproductive toxicity, oxidative stress, metabolic disruption, immunological toxicity, developmental toxicity, cellular damage and necrosis. PFAS bioaccumulation plays a significant role and has an impact on the composition of the intestinal microbiota, which is influenced by the kind of diet and is directly related to the host’s well-being. PFASs also act as endocrine disruptor chemicals (EDCs) which can change the endocrine system and result in dysbiosis of gut microbes and other health repercussions. In silico investigation and analysis also shows that PFASs are incorporated into the maturing oocytes during vitellogenesis and are bound to vitellogenin and other yolk proteins. The present review reveals that aquatic species, especially fishes, are negatively affected by exposure to emerging PFASs. Additionally, the effects of PFAS pollution on aquatic ecosystems were investigated by evaluating a number of characteristics, including extracellular polymeric substances (EPSs) and chlorophyll content as well as the diversity of the microorganisms in the biofilms. Therefore, this review will provide crucial information on the possible adverse effects of PFASs on fish growth, reproduction, gut microbial dysbiosis, and its potential endocrine disruption. This information aims to help the researchers and academicians work and come up with possible remedial measures to protect aquatic ecosystems as future works need to be focus on techno-economic assessment, life cycle assessment, and multi criteria decision analysis systems that screen PFAS-containing samples. New innovative methods requires further development to reach detection at the permissible regulatory limits

Complete mitochondrial genome of nearly threatened freshwater ornamental fish, Microphis deocata and its phylogenetic relationship within Syngnathidae

Microphis deocata (deocata pipefish), belonging to family Syngnathidae, is one of the important indigenous ornamental fish species listed as near threatened in the IUCN red list. Here, we first report the complete mitochondrial genome of deocata pipefish using Illumina next-generation sequencing platform. The total length of the mitogenome is 16,526 bp. It encompasses 13 protein coding genes, 2 ribosomal rRNAs, and 22 tRNAs. The WANCY region (a cluster of five tRNA genes) contains the 50 bp OL light strand origin of replication. Phylogenetic analysis of Syngnathidae revealed M. deocata to cluster with Oostethus manadensis, forming a sister group with Doryrhamphus japonicas and Dunckerocampus dactyliophorus. The mitochondrial genome sequence data generated in the present study will play an important role in population genetic analysis and developing conservation strategies for this species

Identification of molecular markers in Labeo rohita towards better carbohydrate utilization

The contribution of aquaculture products in providing nutritional and food security to human is increasing expeditiously with the increase in animal protein demand. Feed cost contributes more than 60% of the cost of aquaculture production. Henceforth, formulation of cheap fish feed is one of the greatest challenges in aquaculture industry. Carbohydrates are the cheap source of dietary energy. So their level of utilization in fish is an exciting area in research for decreasing the fish feed cost.  Molecular markers such as microsatellite and single nucleotide polymorphism (SNP) are used for genetic mapping, quantitative trait loci identification and genome-wide association studies in several aquaculture species. In this experiment, SNPs and microsatellite markers linked to carbohydrate utilization in Labeo rohita were identified. Liver tissue samples of Labeo rohita and Labeo bata were collected from individuals fed with a customized diet with 40% carbohydrate for a period of 21 days. RNA was extracted and cDNA library was prepared and sequenced on Illumina NextSeq 500 platform. 7.5 GB of data was generated from each species. Assembly of rohu data resulted in 70, 225 contigs, out of which 6284 microsatellite markers were identified. Among which, 3838, 1817, 488, 132 and 9 were di-, tri-, tetra-, penta- and hexa-repeats, respectively. Primer modelling was successful for 4190 sequences. Similarly, 2, 14, 071 SNPs were identified using CLC bio v7.0.4 and utilizing Illumina reads obtained from Labeo bata. This study can be helpful in efficient use of carbohydrate in Labeo species for decreasing feed cost globally