Identification of dominant bacterial phylotypes in a cadmium-treated forest soil

The presence of heavy metals in soils can lead to changes in microbial community structure, characterized by the dominance of groups that are able to tolerate contamination. Such groups may provide good microbial indicators of heavy-metal pollution in soil. Through terminal restriction fragment length polymorphism (T-RFLP) profiling, changes in the bacterial community structure of an acidic forest soil that had been incubated with cadmium (Cd) for 30 days were investigated. T-RFLP revealed, in particular, three operational taxonomic units (OTUs) strongly dominating in relative abundance in the contaminated soil. By cloning of the amplified 16S rRNA genes and partial sequencing of 25 clones, these three dominant OTUs were phylogenetically characterized. One dominant OTU in the cadmium-contaminated soil was derived from Betaproteobacteria, genus Burkholderia, and the other two were from uncultured members of the class Actinobacteria, closely related to the genus Streptomyces. To confirm T-RFLP data, four primers were designed on the basis of this study's dominant sequences, targeting the OTUs corresponding to Burkholderia or Actinobacteria. Real-time PCR showed that Burkholderia target sequences were more abundant in cadmium-treated soil (7.8 × 107± 3.0 × 107 targets g−1 soil) than in untreated soil (4.0 × 106± 8.9 × 105 targets g−1 soil). It was concluded that the genus Burkholderia includes species that may be particularly dominant under cadmium contaminatio

Screening suitable legumes for living mulches to support nitrogen dynamics and weed control in a durum wheat-forage sorghum crop sequence

Relay intercropping of service legumes (living mulch) is a valuable agroecological practice to support nutrient availability, yield and non-chemical weed control in a crops sequence, if suitable legumes are chosen. This study tested the suitability of eight legume living mulches for relay intercropping in durum wheat (Triticum durum Desf.) evaluating their effects on the subsequent forage sorghum (Sorghum bicolor L. Moench) in a Mediterranean low-input cereal-based cropping system. Legumes include perennial (Medicago sativa, Medicago lupulina, Trifolium repens, Hedysarum coronarium), annual (Trifolium incarnatum, Trifolium resupinatum) and annual self-seeding (Trifolium subterraneum, Medicago polymorpha) species. A plot experiment repeating two times a wheat-sorghum crop sequence, was carried out in Central Italy to assess the effects of relay intercropping of legumes on agronomical and economic performance of the associated wheat and subsequent sorghum. The legumes were undersown in the already developed durum wheat in late winter. They were maintained after wheat harvest and used as green manure by biomass chopping and plowing in the following spring at sorghum sowing time. None of the intercropped legumes affected N uptake or grain protein content of the companion wheat with respect to the control (wheat sole crop). In the spring before sorghum sowing, N input from legume biomass residues was assessed and it sensibly changed according to legume species, ranging from 1.2 (T. incarnatum) to 182 kg ha−1 (H. coronarium). The legume treatments significantly affected the N uptake in the subsequent sorghum and it ranged from 20.2 to 172.6 kg ha−1. Without the use of additional external nitrogen input, average sorghum dry biomass production preceded by H. coronarium (13.3 t ha−1), T. repens (11.8 t ha−1), T. subterraneum (11.0 t ha−1) and M. sativa (9.3 t ha−1) was in line with the productive level under conventional conditions. Biomass residues of M. sativa significantly reduced the total weed biomass in sorghum by 65% compared with the control. In sorghum, preceding legumes such as T. resupinatum and T. incarnatum promoted dicotyledonous weed growth. Hedysarum coronarium and T. repens were the best legumes for relay intercropping in the low-input wheat-sorghum crop sequence under Mediterranean conditions of this study according to agronomic and economic evaluation. These legumes were able to increase soil nitrogen content allowing to significantly reduce external nitrogen fertilization while optimizing sorghum production. When gross income is calculated at cropping system level, most legumes provide a positive economic balance

COPSEC: Compliance-Oriented IoT Security and Privacy Evaluation Framework

A rising number of Internet of Things (IoT) security and privacy threats have been documented over the last few years. However, IoT devices' domain designs are out-of-date and do not take into consideration the changing dangers associated with them. In this paper, we present COPSEC, a novel framework for evaluating whether IoT devices are compliant with security guidelines and privacy regulations. We extract metrics from existing guidelines and regulations and test them on a set of devices by performing hundreds of automated experiments. Our results indicate not only that these devices are not compliant with basic security guidelines, but also that their data collection operations may introduce privacy risks for the users that adopt them

Response of methanotrophic activity and community structure to temperature changes in a diffusive CH4/O2 counter gradient in an unsaturated porous medium

Microbial methane oxidation is a key process in the global methane cycle. In the context of global warming, it is important to understand the responses of the methane-oxidizing microbial community to temperature changes in terms of community structure and activity. We studied microbial methane oxidation in a laboratory-column system in which a diffusive CH4/O2 counter gradient was maintained in an unsaturated porous medium at temperatures between 4 and 20 °C. Methane oxidation was highly efficient at all temperatures, as on average 99 ± 0.5% of methane supplied to the system was oxidized. The methanotrophic community that established in the model system after initial inoculation appeared to be able to adapt quickly to different temperatures, as methane emissions remained low even after the system was subjected to abrupt temperature changes. FISH showed that Type I as well as Type II methanotrophs were probably responsible for the observed activity in the column system, with a dominance of Type I methanotrophs. Cloning and sequencing suggested that Type I methanotrophs were represented by the genus Methylobacter while Type II were represented by Methylocystis. The results suggest that in an unsaturated system with diffusive substrate supply, direct effects of temperature on apparent methanotrophic activity and community may be of minor importance. However, this remains to be verified in the fiel

Professioni sanitarie della riabilitazione: analisi critica e valutazione della percezione degli studenti

Introduzione: si ipotizza una mancanza di “cultura condivisa” tra le professioni riabilitative derivante dalla scarsa conoscenza tra le stesse.Obiettivo: analisi del grado di conoscenza degli studenti circa le differenti figure riabilitative e il significato attribuito al concetto di “riabilitazione”.Materiali e metodi: tra aprile e settembre 2013 un questionario ad hoc è stato compilato da 80 studenti dei corsi triennali delle professioni riabilitative e da 9 studenti della laurea magistrale in Scienze Riabilitative (Università degli Studi di Padova).Risultati: il 5% degli studenti triennali è in grado di identificare tutte le professioni riabilitative, la percentuale aumenta per gli studenti magistrali: 66,7% (p<0,0001). Vengono identificate alcune “aree” trasversali in riabilitazione: “obiettivi riabilitativi”; “relazione con il paziente”; “filosofia sottesa alla relazione riabilitativa”; “aree e modalità di intervento”; “funzioni e competenze”; “conoscenze”.Conclusioni: temi e dati rilevati incidono sul concetto di “identità professionale”; l’inserirsi in un quadro riabilitativo più ampio comporta una mediazione tra il proprio e l’altrui patrimonio conoscitivo nonché la formulazione di obiettivi condivisi. Risulta essenziale la predisposizione di contesti formativo-universitari adeguati

Bacterial community structure and activity in different Cd-treated forest soils

In this study we compared indicators of Cd bioavailability (water extracts, Lakanen extracts, free ions) and ecotoxicity in forest soils with contrasting physico-chemical characteristics. Soil samples were treated with CdCl2 solutions (0, 0.1, 1, 10 and 100 mM) and incubated for 30 days. Microbial activity indexes (acid phosphatase, β-glucosidase, basal respiration) and changes in bacterial community structure using terminal restriction fragment length polymorphism (T-RFLP) fingerprinting were investigated. The Cd concentrations measured ranged from 1% to 37% of the total additions in water extracts, to higher levels in Lakanen extracts. Effects of Cd were observed at bioavailable concentrations exceeding United Nations/European Economic Commission UN/ECE guidelines for total Cd in the soil solution. Basal respiration was the most affected index, while enzymatic activities showed variable responses to the Cd treatments. We also noticed that soils with pH higher than 6.7 and clay content higher than 50% showed inhibition of basal respiration but no marked shift in bacterial community structure. Soils with lower pH (pH <5.8) with less clay content (<50%) showed in addition strong changes in the bacterial community structure. Our results provide evidence for the importance of relating the effects of Cd on the soil communities to soil properties and to bioavailabilit

Asteroid taxonomic signatures from photometric phase curves

We explore the correlation between an asteroid's taxonomy and photometric phase curve using the H, G12 photometric phase function, with the shape of the phase function described by the single parameter G12. We explore the usability of G12 in taxonomic classification for individual objects, asteroid families, and dynamical groups. We conclude that the mean values of G12 for the considered taxonomic complexes are statistically different, and also discuss the overall shape of the G12 distribution for each taxonomic complex. Based on the values of G12 for about half a million asteroids, we compute the probabilities of C, S, and X complex membership for each asteroid. For an individual asteroid, these probabilities are rather evenly distributed over all of the complexes, thus preventing meaningful classification. We then present and discuss the G12 distributions for asteroid families, and predict the taxonomic complex preponderance for asteroid families given the distribution of G12 in each family. For certain asteroid families, the probabilistic prediction of taxonomic complex preponderance can clearly be made. The Nysa-Polana family shows two distinct regions in the proper element space with different G12 values dominating in each region. We conclude that the G12-based probabilistic distribution of taxonomic complexes through the main belt agrees with the general view of C complex asteroid proportion increasing towards the outer belt. We conclude that the G12 photometric parameter cannot be used in determining taxonomic complex for individual asteroids, but it can be utilized in the statistical treatment of asteroid families and different regions of the main asteroid belt.Comment: submitted to Icaru

Legume Ecotypes and Commercial Cultivars Differ in Performance and Potential Suitability for Use as Permanent Living Mulch in Mediterranean Vegetable Systems

Weed control in organic conservative vegetable systems is extremely challenging and the use of legume permanent living mulches (pLM) presents an interesting opportunity. The successful use of pLM is largely determined by the choice of appropriate legumes which are able to combine adequate weed control with a marginal competitive effect on the cash crop(s). However, the availability of legumes for such systems is limited and their characterization based on growth traits can support the selection of suitable legumes for conservation organic vegetable systems. The current study investigated weed control capacity and variability in morphological and phenological traits relevant in inter-plant competition among a range of 11 commercial cultivars of legumes and seven ecotypes of Medicago polymorpha (bur medic). For commercial cultivars, Lotus corniculatus (bird’s-foot trefoil) and Trifolium repens (white clover) showed the best weed control capacity, while Trifolium subterraneum (subterranean clover) and Medicago polymopha had more suitable characteristics for a rapid and complete establishment of the pLM. Overall, legume mulches appear more effective in dicotyledonous than in monocotyledonous weed control. Trifolium subterraneum cv. Antas and T. repens cv. Haifa were identified as the potentially most suitable legumes for use as pLM and their use in mixtures could be a promising solution. In addition, the ecotypes of Medicago polymorpha Manciano and Talamone proved to be well adapted for local environmental conditions and they showed a better weed suppression than the commercial cultivars of Medicago polymorpha

Relay intercropping can efficiently support weed management in cereal-based cropping systems when appropriate legume species are chosen

Relay intercropping of subsidiary legumes with durum wheat (living mulch) can be a viable option to support ecological weed control and optimize nutrient cycling in cereal-based cropping systems. However, the lack of knowledge on suitable legume species is often identified as the main bottleneck for the successful application of legume living mulches. This study aimed to evaluate the suitability of 12 different legumes for relay intercropping with wheat in two contrasting Mediterranean cereal-based cropping systems respectively characterized by low-input and integrated management. Each legume was monitored from the undersowing in wheat until the following spring and we compared direct drilling to broadcast sowing of legumes. None of the undersown legumes showed a negative effect on the wheat grain yield. Relay intercropping of legumes proved to be an effective solution to control weeds before and after the wheat harvest, provided suitable legumes species are chosen. Suitable legumes reduced the weed biomass up to the 90% during the intercropping and up to 94% in the following spring. On the contrary, legumes such as Trifolium resupinatum, V icia villosa, Medicago truncatula, and Medicago scutellata boosted weed growth in the following spring in comparison with the control. According to the performance of legumes, Medicago sativa, Trifolium repens and Medicago lupulina had the most suitable characteristics for relay intercropping with durum wheat at the Ravenna site, in a highly productive region whereas Medicago sativa, Hedysarum coronarium and Trifolium subterraneum performed better in the low-input system near Pisa, where yields are generally lower. This is the first time that such a diversity in legumes species is tested in the same experiment for relay intercropping under diversified environmental and management conditions. The results of this study can support farmers in selecting the most appropriated legume species for their specific cropping systems and local conditions

The ISWI Chromatin Remodeler Organizes the hsrω ncRNA–Containing Omega Speckle Nuclear Compartments

The complexity in composition and function of the eukaryotic nucleus is achieved through its organization in specialized nuclear compartments. The Drosophila chromatin remodeling ATPase ISWI plays evolutionarily conserved roles in chromatin organization. Interestingly, ISWI genetically interacts with the hsrω gene, encoding multiple non-coding RNAs (ncRNA) essential, among other functions, for the assembly and organization of the omega speckles. The nucleoplasmic omega speckles play important functions in RNA metabolism, in normal and stressed cells, by regulating availability of hnRNPs and some other RNA processing proteins. Chromatin remodelers, as well as nuclear speckles and their associated ncRNAs, are emerging as important components of gene regulatory networks, although their functional connections have remained poorly defined. Here we provide multiple lines of evidence showing that the hsrω ncRNA interacts in vivo and in vitro with ISWI, regulating its ATPase activity. Remarkably, we found that the organization of nucleoplasmic omega speckles depends on ISWI function. Our findings highlight a novel role for chromatin remodelers in organization of nucleoplasmic compartments, providing the first example of interaction between an ATP-dependent chromatin remodeler and a large ncRNA