6,159 research outputs found
A BPS Interpretation of Shape Invariance
We show that shape invariance appears when a quantum mechanical model is
invariant under a centrally extended superalgebra endowed with an additional
symmetry generator, which we dub the shift operator. The familiar mathematical
and physical results of shape invariance then arise from the BPS structure
associated with this shift operator. The shift operator also ensures that there
is a one-to-one correspondence between the energy levels of such a model and
the energies of the BPS-saturating states. These findings thus provide a more
comprehensive algebraic setting for understanding shape invariance.Comment: 15 pages, 2 figures, LaTe
Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences
Five distinct patterns of DNA replication have been identified during S-phase in asynchronous and synchronous cultures of mammalian cells by conventional fluorescence microscopy, confocal laser scanning microscopy, and immunoelectron microscopy. During early S-phase, replicating DNA (as identified by 5-bromodeoxyuridine incorporation) appears to be distributed at sites throughout the nucleoplasm, excluding the nucleolus. In CHO cells, this pattern of replication peaks at 30 min into S-phase and is consistent with the localization of euchromatin. As S-phase continues, replication of euchromatin decreases and the peripheral regions of heterochromatin begin to replicate. This pattern of replication peaks at 2 h into S-phase. At 5 h, perinucleolar chromatin as well as peripheral areas of heterochromatin peak in replication. 7 h into S-phase interconnecting patches of electron-dense chromatin replicate. At the end of S-phase (9 h), replication occurs at a few large regions of electron-dense chromatin. Similar or identical patterns have been identified in a variety of mammalian cell types. The replication of specific chromosomal regions within the context of the BrdU-labeling patterns has been examined on an hourly basis in synchronized HeLa cells. Double labeling of DNA replication sites and chromosome-specific alpha-satellite DNA sequences indicates that the alpha-satellite DNA replicates during mid S-phase (characterized by the third pattern of replication) in a variety of human cell types. Our data demonstrates that specific DNA sequences replicate at spatially and temporally defined points during the cell cycle and supports a spatially dynamic model of DNA replication
Memory with memory in genetic programming
We introduce Memory with Memory Genetic Programming (MwM-GP), where we use soft assignments and soft return operations. Instead of having the new value completely overwrite the old value of registers or memory, soft assignments combine such values. Similarly, in soft return operations the value of a function node is a blend between the result of a calculation and previously returned results. In extensive empirical tests, MwM-GP almost always does as well as traditional GP, while significantly outperforming it in several cases. MwM-GP also tends to be far more consistent than traditional GP. The data suggest that MwM-GP works by successively refining an approximate solution to the target problem and that it is much less likely to have truly ineffective code. MwM-GP can continue to improve over time, but it is less likely to get the sort of exact solution that one might find with traditional GP
Customs’ control on genetically modified food products across the border of the Eurasian Economic Union
Purpose: The purpose of the article is to determine the role of customs' control and directions of its improvement in the movement of genetically modified foods across the customs' border of the Eurasian Economic Union. In carrying out the study, the authors rely on the methods of theoretical modeling and interpretation of legal concepts and normative legal acts, which allowed to identify theoretical and applied problems of customs control in the conditions of Eurasian integration. Design/Methodology/Approach: The authors define the concepts of genetically modified foods and their turnover, highlight the problems of customs control over the movement of genetically modified foods across the customs border of the Eurasian Economic Union, and propose ways to improve it. Findings: The authors define the concepts of genetically modified foods and their turnover, highlight the problems of customs control over the movement of genetically modified foods across the customs border of the Eurasian Economic Union, and propose ways to improve it. Practical Implications: The results may be implicated into a legal framework of Russian Federation and improve customs' regulation both in Russia and abroad. Originality/Value: The main contribution of this article is the comprehensive analysis of legal and institutional background of genetically modified foods and their cross-border movement in EAEU countries as well as the measures of improving their customs' control.peer-reviewe
Organization of the double-stranded RNA-activated protein kinase DAI and virus-associated VA RNAI in adenovirus-2-infected HeLa cells
We have examined the cellular distribution of the double-stranded RNA-activated protein kinase DAI in adenovirus 2 (Ad2)-infected and uninfected HeLa cells. In uninfected cells DAI was found to be concentrated in the cytoplasm. In addition, DAI was localized in the nucleoli and diffusely distributed throughout the nucleoplasm. Cells treated with alpha-interferon displayed a similar pattern of distribution for DAI. When RNA polymerase I activity was inhibited by the drug actinomycin D, nucleoli segregated and DAI was found to colocalize with the dense fibrillar region of the nucleoli. During mitosis, the distribution of DAI paralleled that of rRNA. In adenovirus-infected cells the localization of DAI was similar to that in uninfected interphase cells. VA RNAI was detected in Ad2-infected cells by 10-14 hours post-infection as fine dots in the nucleoplasm. By 18-24 hours post-infection, VA RNAI appeared in bigger and more abundant dots in the nucleoplasm and the cytoplasm was intensively labeled. Transient expression of the VA RNAI gene in uninfected cells resulted in a similar localization of the RNA. Our results are consistent with a role for DAI and VA RNAI in protein synthesis and suggest that DAI may play an early role in ribosome biogenesis in the nucleolus in addition to its cytoplasmic role in translation
Immunocytochemical localization of casein kinase II during interphase and mitosis
We have developed specific antibodies to synthetic peptide antigens that react with the individual subunits of casein kinase II (CKII). Using these antibodies, we studied the localization of CKII in asynchronous HeLa cells by immunofluorescence and immunoelectron microscopy. Further studies were done on HeLa cells arrested at the G1/S transition by hydroxyurea treatment. Our results indicate that the CKII alpha and beta subunits are localized in the cytoplasm during interphase and are distributed throughout the cell during mitosis. Further electron microscopic investigation revealed that CKII alpha subunit is associated with spindle fibers during metaphase and anaphase. In contrast, the CKII alpha' subunit is localized in the nucleus during G1 and in the cytoplasm during S. Taken together, our results suggest that CKII may play significant roles in cell division control by shifting its localization between the cytoplasm and nucleus
Numerical Observation of a Tubular Phase in Anisotropic Membranes
We provide the first numerical evidence for the existence of a tubular phase,
predicted by Radzihovsky and Toner (RT), for anisotropic tethered membranes
without self-avoidance. Incorporating anisotropy into the bending rigidity of a
simple model of a tethered membrane with free boundary conditions, we show that
the model indeed has two phase transitions corresponding to the flat-to-tubular
and tubular-to-crumpled transitions. For the tubular phase we measure the Flory
exponent and the roughness exponent . We find
and , which are in reasonable agreement with the theoretical
predictions of RT --- and .Comment: 8 pages, LaTeX, REVTEX, final published versio
Proteomic analysis of interchromatin granule clusters
A variety of proteins involved in gene expression have been localized within mammalian cell nuclei in a speckled distribution that predominantly corresponds to interchromatin granule clusters (IGCs). We have applied a mass spectrometry strategy to identify the protein composition of this nuclear organelle purified from mouse liver nuclei. Using this approach, we have identified 146 proteins, many of which had already been shown to be localized to IGCs, or their functions are common to other already identified IGC proteins. In addition, we identified 32 proteins for which only sequence information is available and thus these represent novel IGC protein candidates. We find that 54% of the identified IGC proteins have known functions in pre-mRNA splicing. In combination with proteins involved in other steps of pre-mRNA processing, 81% of the identified IGC proteins are associated with RNA metabolism. In addition, proteins involved in transcription, as well as several other cellular functions, have been identified in the IGC fraction. However, the predominance of pre-mRNA processing factors supports the proposed role of IGCs as assembly, modification, and/or storage sites for proteins involved in pre-mRNA processing
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