How does Labrador Sea Water enter the deep western boundary current?

Author Posting. © American Meteorological Society, 2008. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 38 (2008): 968-983, doi:10.1175/2007JPO3807.1.Labrador Sea Water (LSW), a dense water mass formed by convection in the subpolar North Atlantic, is an important constituent of the meridional overturning circulation. Understanding how the water mass enters the deep western boundary current (DWBC), one of the primary pathways by which it exits the subpolar gyre, can shed light on the continuity between climate conditions in the formation region and their downstream signal. Using the trajectories of (profiling) autonomous Lagrangian circulation explorer [(P)ALACE] floats, operating between 1996 and 2002, three processes are evaluated for their role in the entry of Labrador Sea Water in the DWBC: 1) LSW is formed directly in the DWBC, 2) eddies flux LSW laterally from the interior Labrador Sea to the DWBC, and 3) a horizontally divergent mean flow advects LSW from the interior to the DWBC. A comparison of the heat flux associated with each of these three mechanisms suggests that all three contribute to the transformation of the boundary current as it transits the Labrador Sea. The formation of LSW directly in the DWBC and the eddy heat flux between the interior Labrador Sea and the DWBC may play leading roles in setting the interannual variability of the exported water mass.We are also grateful to the NSF for their support of this research

Modeling winter circulation under landfast ice : the interaction of winds with landfast ice

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 117 (2012): C04006, doi:10.1029/2011JC007649.Idealized models and a simple vertically averaged vorticity equation illustrate the effects of an upwelling favorable wind and a spatially variable landfast ice cover on the circulation beneath landfast ice. For the case of no along-shore variations in ice, upwelling favorable winds seaward of the ice edge result in vortex squashing beneath the landfast ice leading to (1) large decreases in coastal and ice edge sea levels, (2) cross-shore sea level slopes and weak (<~.05 m s−1) under-ice currents flowing upwind, (3) strong downwind ice edge jets, and (4) offshore transport in the under-ice and bottom boundary layers of the landfast ice zone. The upwind under-ice current accelerates quickly within 2–4 days and then slows as cross-shore transport gradually decreases the cross-shore sea level slope. Near the ice edge, bottom boundary layer convergence produces ice edge upwelling. Cross-ice edge exchanges occur in the surface and above the bottom boundary layer and reduce the under-ice shelf volume by 15% in 10 days. Under-ice along-shore pressure gradients established by along- and cross-shore variations in ice width and/or under-ice friction alter this basic circulation pattern. For a landfast ice zone of finite width and length, upwelling-favorable winds blowing seaward of and transverse to the ice boundaries induce downwind flow beneath the ice and generate vorticity waves that propagate along-shore in the Kelvin wave direction. Our results imply that landfast ice dynamics, not included explicitly herein, can effectively convert the long-wavelength forcing of the wind into shorter-scale ocean motions beneath the landfast ice.J.K. was supported by the Prince William Sound Oil Spill Recovery Institute (OSRI), Alaska Sea Grant in cooperation with the Center for Global Change and the UAF Graduate School. Additional support was provided to J.K. and T.W. by the U.S. BOEMRE through the University of Alaska Coastal Marine Institute (Contract 1435-01-02-CA-85294) and by the Office of Naval Research through the National Oceanographic Partnership Program (grant N00014-07-1- 1040).2012-10-0

Laboratory experiments on eddy generation by a buoyant coastal current flowing over variable bathymetry

Author Posting. © American Meteorological Society, 2006. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 36 (2006): 395-411, doi:10.1175/JPO2857.1.Irminger rings are warm-core eddies formed off the west coast of Greenland. Recent studies suggest that these eddies, which are implicated in the rapid springtime restratification of the Labrador Sea, are formed by an internal instability of the West Greenland Current (WGC), triggered by bathymetric variations. This study seeks to explore the effect of the magnitude and downstream length scale of bathymetric variations on the stability of a simple model of the WGC in a series of laboratory experiments in which a buoyant coastal current was allowed to flow over bathymetry consisting of piecewise constant slopes of varying magnitude. The currents did not form eddies over gently sloping bathymetry and only formed eddies over steep bathymetry if the current width exceeded the width of the sloping bathymetry. Eddying currents were immediately stabilized if they flowed onto gently sloping topography. Bathymetric variations that persisted only a short distance downstream perturbed the flow locally but did not lead to eddy formation. Eddies formed only once the downstream length of the bathymetric variations exceeded a critical scale of about 8 Rossby radii. These results are consistent with the observed behavior of the WGC, which begins to form Irminger rings after entering a region where the continental slope abruptly steepens and becomes narrower than the WGC itself in a region spanning about 20–80 Rossby radii of downstream distance.The authors gratefully acknowledge the National Science Foundation (Grant OCE- 9810657) and the Office of Naval Research (Grant N00014-97-1-0934) for their support of the 2003 WHOI Geophysical Fluid Dynamics Summer School where much of the research presented in this paper was performed. CLW received additional support from the Office of Naval Research Grant N00014-98-1-0813

Storm-induced upwelling of high pCO2 waters onto the continental shelf of the western Arctic Ocean and implications for carbonate mineral saturation states

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 39 (2012): L07606, doi:10.1029/2012GL051574.The carbon system of the western Arctic Ocean is undergoing a rapid transition as sea ice extent and thickness decline. These processes are dynamically forcing the region, with unknown consequences for CO2 fluxes and carbonate mineral saturation states, particularly in the coastal regions where sensitive ecosystems are already under threat from multiple stressors. In October 2011, persistent wind-driven upwelling occurred in open water along the continental shelf of the Beaufort Sea in the western Arctic Ocean. During this time, cold (32.4) halocline water—supersaturated with respect to atmospheric CO2 (pCO2 > 550 μatm) and undersaturated in aragonite (Ωaragonite < 1.0) was transported onto the Beaufort shelf. A single 10-day event led to the outgassing of 0.18–0.54 Tg-C and caused aragonite undersaturations throughout the water column over the shelf. If we assume a conservative estimate of four such upwelling events each year, then the annual flux to the atmosphere would be 0.72–2.16 Tg-C, which is approximately the total annual sink of CO2 in the Beaufort Sea from primary production. Although a natural process, these upwelling events have likely been exacerbated in recent years by declining sea ice cover and changing atmospheric conditions in the region, and could have significant impacts on regional carbon budgets. As sea ice retreat continues and storms increase in frequency and intensity, further outgassing events and the expansion of waters that are undersaturated in carbonate minerals over the shelf are probable.Funding for this work was provided by the National Science Foundation (ARC1041102 – JTM, OPP0856244-RSP, and ARC1040694- LWJ), the National Oceanic and Atmospheric Administration (CIFAR11021- RHB) and the West Coast & Polar Regions Undersea Research Center (POFP00983 – CLM and JM).2012-10-1

The influence of winter water on phytoplankton blooms in the Chukchi Sea

Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 118 (2015): 53-72, doi:10.1016/j.dsr2.2015.06.006.The flow of nutrient-rich winter water (WW) through the Chukchi Sea plays an important and previously uncharacterized role in sustaining summer phytoplankton blooms. Using hydrographic and biogeochemical data collected as part of the ICESCAPE program (June-July 2010-11), we examined phytoplankton bloom dynamics in relation to the distribution and circulation of WW (defined as water with potential temperature ≤ -1.6°C) across the Chukchi shelf. Characterized by high concentrations of nitrate (mean: 12.3 ± 5.13 μmol L-1) that typically limits primary production in this region, WW was correlated with extremely high phytoplankton biomass, with mean chlorophyll a concentrations that were three-fold higher in WW (8.64 ± 9.75 μg L-1) than in adjacent warmer water (2.79 ± 5.58 μg L-1). Maximum chlorophyll a concentrations (~30 μg L-1) were typically positioned at the interface between nutrient-rich WW and shallower, warmer water with more light availability. Comparing satellite-based calculations of open water duration to phytoplankton biomass, nutrient concentrations, and oxygen saturation revealed widespread evidence of under-ice blooms prior to our sampling, with biogeochemical properties indicating that blooms had already terminated in many places where WW was no longer present. Our results suggest that summer phytoplankton blooms are sustained for a longer duration along the pathways of nutrient-rich WW and that biological hotspots in this region (e.g. the mouth of Barrow Canyon) are largely driven by the flow and confluence of these extremely productive pathways of WW that flow across the Chukchi shelf.This material is based upon work supported by the National Aeronautic and Space Administration (NASA) under Grant No. NNX10AF42G and the National Science Foundation Graduate Research Fellowship under Grant No. DGE-0645962 to K.E. Lowry

Harmful algal blooms in the Alaskan Arctic: an emerging threat as the ocean warms

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Anderson, D., Fachon, E., Hubbard, K., Lefebvre, K., Lin, P., Pickart, R., Richlen, M., Sheffield, G., & Van Hemert, C. Harmful algal blooms in the Alaskan Arctic: an emerging threat as the ocean warms. Oceanography, 35(2), (2022), https://doi.org/10.5670/oceanog.2022.121.Harmful algal blooms (HABs) present an emerging threat to human and ecosystem health in the Alaskan Arctic. Two HAB toxins are of concern in the region: saxitoxins (STXs), a family of compounds produced by the dinoflagellate Alexandrium catenella, and domoic acid (DA), produced by multiple species in the diatom genus Pseudo-nitzschia. These potent neurotoxins cause paralytic and amnesic shellfish poisoning, respectively, in humans, and can accumulate in marine organisms through food web transfer, causing illness and mortality among a suite of wildlife species. With pronounced warming in the Arctic, along with enhanced transport of cells from southern waters, there is significant potential for more frequent and larger HABs of both types. STXs and DA have been detected in the tissues of a range of marine organisms in the region, many of which are important food resources for local residents. The unique nature of the Alaskan Arctic, including difficult logistical access, lack of response infrastructure, and reliance of coastal populations on the noncommercial acquisition of marine resources for nutritional, cultural, and economic well-being, poses urgent and significant challenges as this region warms and the potential for impacts from HABs expands.The authors acknowledge that the Alaskan Arctic as described here includes the lands and waters of the Inupiaq, Saint Lawrence Island Yupik, and Central Yupik peoples. Funding for DMA, RSP, EF, PL, and MLR was provided by grants from NSF Office of Polar Programs (OPP-1823002 and OPP-1733564) and NOAA’s Arctic Research program (through the Cooperative Institute for the North Atlantic Region [CINAR]; NA14OAR4320158 and NA19OAR4320074), and for DMA, KH, and KAL through NOAA’s Center for Coastal and Ocean Studies ECOHAB Program (NA20NOS4780195). Additional support was provided for DMA, MLR, and EF by the US National Park Service Shared Beringian Heritage Program (P21AC12214-00). We also thank Natalie Renier (WHOI Graphic Services) and Emily Bowers (Northwest Fisheries Science Center) for creating figures. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the US Government. This is ECOHAB Contribution number 1007

Circulation in the vicinity of Mackenzie Canyon from a year-long mooring array

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lin, P., Pickart, R. S., Fissel, D., Ross, E., Kasper, J., Bahr, F., Torres, D. J., O'Brien, J., Borg, K., Melling, H., & Wiese, F. K. Circulation in the vicinity of Mackenzie Canyon from a year-long mooring array. Progress in Oceanography, 187, (2020): 102396, doi:10.1016/j.pocean.2020.102396.Data from a five-mooring array extending from the inner shelf to the continental slope in the vicinity of Mackenzie Canyon, Beaufort Sea are analyzed to elucidate the components of the boundary current system and their variability. The array, part of the Marine Arctic Ecosystem Study (MARES), was deployed from October 2016 to September 2017. Four distinct currents were identified: an eastward-directed flow adjacent to the coast; a westward-flowing, surface-intensified current centered on the outer-shelf; a bottom-intensified shelfbreak jet flowing to the east; and a recirculation at the base of the continental slope within the canyon. The shelf current transports −0.120.03 Sv in the mean and is primarily wind-driven. The response is modulated by the presence of ice, with little-to-no signal during periods of nearly-immobile ice cover and maximum response when there is partial ice cover. The shelfbreak jet transports 0.030.02 Sv in the mean, compared to 0.080.02 Sv measured upstream in the Alaskan Beaufort Sea over the same time period. The loss of transport is consistent with a previous energetics analysis and the lack of Pacific-origin summer water downstream. The recirculation in the canyon appears to be the result of local dynamics whereby a portion of the westward-flowing southern limb of the Beaufort Gyre is diverted up the canyon across isobaths. This interpretation is supported by the fact that the low-frequency variability of the recirculation is correlated with the wind-stress curl in the Canada Basin, which drives the Beaufort gyre.The authors are indebted to Fisheries and Oceans Canada for building the logistics for MARES into the at-sea missions of the Integrated Beaufort Observatory. We are grateful to the captain and crew of the CCGS Sir Wilfred Laurier for ably deploying and recovering the MARES array. Marshall Swartz assisted with the cruise preparation logistics. We thank the two anonymous reviewers for their input which helped improve the paper. This project was funded by the US Bureau of Ocean Energy Management (BOEM), on behalf of the National Ocean Partnership Program. The Canadian contribution was supported by the Environmental Studies Research Fund (ESRF Project 2014-02N). MARES publication 003

Under-ice phytoplankton blooms inhibited by spring convective mixing in refreezing leads

Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 123 (2018): 90–109, doi:10.1002/2016JC012575.Spring phytoplankton growth in polar marine ecosystems is limited by light availability beneath ice-covered waters, particularly early in the season prior to snowmelt and melt pond formation. Leads of open water increase light transmission to the ice-covered ocean and are sites of air-sea exchange. We explore the role of leads in controlling phytoplankton bloom dynamics within the sea ice zone of the Arctic Ocean. Data are presented from spring measurements in the Chukchi Sea during the Study of Under-ice Blooms In the Chukchi Ecosystem (SUBICE) program in May and June 2014. We observed that fully consolidated sea ice supported modest under-ice blooms, while waters beneath sea ice with leads had significantly lower phytoplankton biomass, despite high nutrient availability. Through an analysis of hydrographic and biological properties, we attribute this counterintuitive finding to springtime convective mixing in refreezing leads of open water. Our results demonstrate that waters beneath loosely consolidated sea ice (84–95% ice concentration) had weak stratification and were frequently mixed below the critical depth (the depth at which depth-integrated production balances depth-integrated respiration). These findings are supported by theoretical model calculations of under-ice light, primary production, and critical depth at varied lead fractions. The model demonstrates that under-ice blooms can form even beneath snow-covered sea ice in the absence of mixing but not in more deeply mixed waters beneath sea ice with refreezing leads. Future estimates of primary production should account for these phytoplankton dynamics in ice-covered waters.National Science Foundation (NSF) Grant Numbers: PLR-1304563 , PLR-1303617; KEL; NSF Graduate Research Fellowship Program Grant Number: DGE-06459622018-07-0

Generalized calculation of magnetic coupling constants for Mott-Hubbard insulators: Application to ferromagnetic Cr compounds

Using a Rayleigh-Schr\"odinger perturbation expansion of multi-band Hubbard models, we present analytic expressions for the super-exchange coupling constants between magnetic transition metal ions of arbitrary separation in Mott-Hubbard insulators. The only restrictions are i) all ligand ions are closed shell anions and ii) all contributing interaction paths are of equal length. For short paths, our results essentially confirm the Goodenough-Kanamori-Anderson rules, yet in general there does not exist any simple rule to predict the sign of the magnetic coupling constants. The most favorable situation for ferromagnetic coupling is found for ions with less than half filled d shells, the (relative) tendency to ferromagnetic coupling increases with increasing path length. As an application, the magnetic interactions of the Cr compounds Rb$_2$CrCl$_4$, CrCl$_3$, CrBr$_3$ and CrI$_3$ are investigated, all of which except CrCl$_3$ are ferromagnets.Comment: 13 pages, 6 eps figures, submitted to Phys Rev

A Conditional Yeast E1 Mutant Blocks the Ubiquitin–Proteasome Pathway and Reveals a Role for Ubiquitin Conjugates in Targeting Rad23 to the Proteasome

E1 ubiquitin activating enzyme catalyzes the initial step in all ubiquitin-dependent processes. We report the isolation of uba1-204, a temperature-sensitive allele of the essential Saccharomyces cerevisiae E1 gene, UBA1. Uba1-204 cells exhibit dramatic inhibition of the ubiquitin–proteasome system, resulting in rapid depletion of cellular ubiquitin conjugates and stabilization of multiple substrates. We have employed the tight phenotype of this mutant to investigate the role ubiquitin conjugates play in the dynamic interaction of the UbL/UBA adaptor proteins Rad23 and Dsk2 with the proteasome. Although proteasomes purified from mutant cells are intact and proteolytically active, they are depleted of ubiquitin conjugates, Rad23, and Dsk2. Binding of Rad23 to these proteasomes in vitro is enhanced by addition of either free or substrate-linked ubiquitin chains. Moreover, association of Rad23 with proteasomes in mutant and wild-type cells is improved upon stabilizing ubiquitin conjugates with proteasome inhibitor. We propose that recognition of polyubiquitin chains by Rad23 promotes its shuttling to the proteasome in vivo