Small-Scale Mapping of Indeterminate Arborescent Acroporid Coral (Acropora cervicornis) Patches

Western Atlantic populations of the staghorn coral Acropora cervicornis have drastically declined over the past few decades. Hence, interest in its ecology and spatial extent has increased. Acroporid corals with indeterminate arborescent growth like A.cervicornis primarily reproduce asexually by fragmentation, which can lead to extensive monotypic patches. Since fragmentation is a major component in indeterminate acroporid reproduction, these patches may expand or move over time. Periodic perimeter mapping facilitates comparison of patch areas to determine movement or expansion. A repeatable, low-cost method using a differential GPS carried by a snorkeler was employed to map the perimeter of A.cervicornis patches in southeast Florida. Perimeters were mapped over a 3-year period. Patch boundaries were dynamic, expanding in one or more directions. Patch areas increased by up to 7.5 times their original size and moved up to 51 m. Results were corroborated by spatial cluster analyses of in situ live coral cover measurements. Getis-Ord Gi* statistic and Anselin Local Moran’s I spatial cluster analyses of live coral cover within an array of in situ monitoring plots indicated that significant high cover clusters moved in the direction of mapped patch perimeter expansion. Expansion was coupled by more than 50 % decreases in total live cover. Information gained herein shows that A. cervicornis patches are spatially and temporally dynamic, having implications to long-term permanent transect monitoring studies and framework development. Results may be applicable to other shallow water indeterminate arborescent acroporid coral species

Marine Biological Monitoring in Broward County, Florida: Year 2 Annual Report

A study has been undertaken to monitor Broward County, Florida (southeast Florida) coral communities, reef fish assemblages and sedimentation rates in relation to possible effects from a proposed extensive beach renourishment (restoration) project. Coral communities and reef fish assemblages will be monitored at a total of 23 stations distributed offshore Broward County. This monitoring effort will characterize and quantify populations of scleractinian (stony) corals, octocorallian (gorgonian) corals, sponges, and reef fishes. In addition, sediment traps located at each station will be sampled and analyzed. This document reports the data collected during the second year of this project. Coral communities and fish assemblages were monitored at each of the 23 sites between September and October 2001. In addition, sedimentation analysis for the January, March, May, July and September 2001 collections were conducted. For September/October 2001, mean (± 1 S.D.) stony coral density for the 23 sites was 2.62 ± 1.85 colonies/m2. Mean stony coral coverage was 2.39 ± 3.96%. Mean gorgonian density was 7.91 ± 8.01 colonies/m2 and mean sponge density was 14.09 ± 6.93 colonies/m2. First Reef sites had greater mean stony coral coverage but lower gorgonian and sponge density than Second and Third Reef sites. First Reef coral cover was much lower than the Third Reef when the First reef site, FTL4, was removed from the analysis. FTL4 had much greater stony coral cover than the mean cover for the remaining First Reef sites (19.95% compared to 1.45%). Shannon-Weaver Diversity Indices performed on the overall transect data resulted in values of 1.45 ± 0.53 and 1.72 ± 0.44 for cover and number of species respectively. Overall evenness was 0.77 ± 0.14 for number of species and 0.64 ± 0.21 for cover. There was no significant difference determined between the January/February 2001 site visit data and the September/October 2001 site visit data for mean stony coral density and cover. Mean octocoral density also did not differ significantly between these site visits, but mean sponge density was significantly less in September/October 2001 than in January/February 2001. Stony coral density, stony coral coverage, gorgonian density and sponge density data collected from the 18 monitoring sites established in 1997 and visited yearly from 1997 to 1999 were analyzed. No significant difference in yearly mean stony coral density, mean stony coral cover and mean gorgonian density was determined. Mean sponge density did show significant differences with 1998 sponge density greater than 1997. Trends in fish density were similar to those trends identified within the coral community transects. The greatest density of fishes occurs on the Third Reef followed by the First and Second. A difference in richness was seen amongst the three Reefs with the First Reef having the lowest number of species. The differences noted in abundance, density, and richness between the data collected in January/February 2001 and in September/October 2001 confirm previous reports of temporal differences in the fish assemblage offshore Broward County (Spieler 1998). The First Reef had a statistically higher rate of sedimentation than both the Second and Third Reefs when data from January-September 2001 were pooled. Pooled site data showed that January 2001 and May 2001 samples had the greatest sedimentation rates. The grain size for sites on the Third Reef was significantly smaller than both the First and Second Reefs. When site data were pooled, January 2001 had a significantly larger mean grain size than the other four sampling intervals in 2001. Data collected and analyses completed during this monitoring project will be used to help evaluate effects from the proposed beach renourishment project

Evidence of fibrinogen as a target of citrullination in IgM rheumatoid factor-positive polyarticular juvenile idiopathic arthritis

<p>Abstract</p> <p>Background</p> <p>Several studies have noted the significance of measuring anti-cyclic citrullinated peptide (CCP) antibodies in juvenile idiopathic arthritis (JIA) as an important indicator for destructive disease, as is the case in rheumatoid arthritis (RA). While the role of anti-CCP antibodies in RA and JIA has become better understood, the identity of the target proteins of this modification has remained elusive. In this study, we evaluated serum from patients with various subtypes of JIA to investigate the presence of anti-deiminated (citrullinated) fibrinogen and anti-citrullinated α-enolase antibodies, and their association with RF and anti-CCP antibody isotypes.</p> <p>Methods</p> <p>Sera were obtained from 96 JIA patients, 19 systemic lupus erythematosus (SLE) patients, and 10 healthy children. All sera were measured for antibodies against citrullinated and native fibrinogen and α-enolase by an enzyme linked immunosorbent assay (ELISA). In addition, all sera were assayed for anti-CCP antibody isotypes and rheumatoid factor (RF) isotypes by ELISA. The relationship between anti-citrullinated fibrinogen and anti-α-enolase antibodies and disease activity and joint damage were also investigated. All results were correlated with clinical and laboratory parameters using Spearman's rho correlation coefficient. Multiple logistic regression analysis was utilized to identify which variables were associated with joint erosions and diagnosis of JIA.</p> <p>Results</p> <p>Thirty-one JIA patients (32%) demonstrated reactivity to citrullinated fibrinogen and 9 (9%) to citrullinated α-enolase. Reactivity to citrullinated fibrinogen and α-enolase was predominantly found in IgM RF-positive polyarthritis patients. Fourteen JIA patients reacted with native α-enolase and a higher percentage of SLE patients reacted with citrullinated α-enolase when compared to JIA patients. Anti-citrullinated fibrinogen antibodies correlated with the presence of IgG anti-CCP antibodies and IgA and IgM RF. The presence of anti-citrullinated α-enolase antibodies correlated with IgA anti-CCP antibodies. IgG anti-CCP antibodies were significantly associated with joint damage and anti-citrullinated fibrinogen antibodies were strongly associated with JIA when compared to control groups. Anti-citrullinated fibrinogen antibodies demonstrated high sensitivity (81%) for IgM RF-positive polyarticular JIA. IgG anti-CCP antibodies had the highest specificity (95%) for JIA, with anti-citrullinated fibrinogen antibodies, IgA anti-CCP antibodies and IgA RF all following at 84%.</p> <p>Conclusions</p> <p>JIA patient sera exhibited strong reactivity to anti-citrullinated fibrinogen antibodies and demonstrated high sensitivity and specificity for JIA, primarily in IgM RF-positive polyarthritis patients. Fibrinogen is one of several protein targets for citrullination in JIA.</p

Analysis of Factors Influencing Southeast Florida Coral Reef Community Composition

The southeast Florida reef system lies offshore a heavily populated and urbanized coast. These high latitude reefs are not only affected by their geography but also by anthropogenic factors that accompany an urban area such as dredging activities, ship groundings, waste water outfalls, runoff and beach erosion. Sedimentation has been shown to influence stony coral community composition including dominance, abundance, cover, diversity, and colony size. Using annual monitoring data collected since 2000, the southeastern Florida reef community is being analyzed to examine if and how sedimentation and other factors such as depth, distance from shore and distance from port channels might influence community composition. All data was collected by SCUBA divers conducting 30m2 belt transect surveys at 24 sites offshore Broward County (southeast), Florida within a depth range of 6 to 18 meters. Stony coral data included colony size, abundance, diversity, percent cover, and mortality. Sponge and octocoral density were collected to gather a more complete picture of community composition. Three sediment bottles at each annually monitored site were collected every 60 days. Weight and grain size of the contents were analyzed and used to determine sedimentation rates at each site. Additionally, the reefs off the southeast Florida coast can be categorized into unique habitat types. These habitat types are also being considered when studying reef community composition and its relationship to sedimentation and other factors

Real-Time Coral Stress Observations Before, During, and After Beach Nourishment Dredging Offshore SE Florida

Beach nourishment in Southeast Florida involves dredging sand source borrow areas located between offshore reefs. From May 2005 to February 2006 Broward County, FL. nourished 10.9 km of beach with 1.5 ×106 m3 of sand. As part of a program to monitor potential reef community impacts, a visual stress index was developed from laboratory experiments and histological analyses for three stony coral species (Montastrea cavernosa, Solenastrea bournoni, and Siderastrea siderea). Scoring involved healthy = 0; moderately stressed = 1 (polyp swelling, increased mucus); markedly stressed = 2 (coloration changes, increased mucus secretion, tissue thinning); and severely stressed = 3 (severe swelling/thinning tissue erosion/necrosis). Colonies were scored weekly at sites adjacent to borrow areas and control sites pre-, during, and post-dredging. Permit conditions were established which would suspend dredging based on mean stress index values above 1.5 at 50% of monitored sites adjacent to borrow areas. This condition was never met. However, three hurricanes, passing the region during dredging, contributed to an elevated mean stress level above 1.0. Post-dredging observations documented recovery to pre-dredging stress levels. This program was effectively used to monitor stress on a sensitive marine habitat adjacent to sediment dredging activities

Global assessment of nitrogen deposition effects on terrestrial plant diversity : a synthesis

Atmospheric nitrogen (N) deposition is it recognized threat to plant diversity ill temperate and northern parts of Europe and North America. This paper assesses evidence from field experiments for N deposition effects and thresholds for terrestrial plant diversity protection across a latitudinal range of main categories of ecosystems. from arctic and boreal systems to tropical forests. Current thinking on the mechanisms of N deposition effects on plant diversity, the global distribution of G200 ecoregions, and current and future (2030) estimates of atmospheric N-deposition rates are then used to identify the risks to plant diversity in all major ecosystem types now and in the future. This synthesis paper clearly shows that N accumulation is the main driver of changes to species composition across the whole range of different ecosystem types by driving the competitive interactions that lead to composition change and/or making conditions unfavorable for some species. Other effects such its direct toxicity of nitrogen gases and aerosols long-term negative effects of increased ammonium and ammonia availability, soil-mediated effects of acidification, and secondary stress and disturbance are more ecosystem, and site-specific and often play a supporting role. N deposition effects in mediterranean ecosystems have now been identified, leading to a first estimate of an effect threshold. Importantly, ecosystems thought of as not N limited, such as tropical and subtropical systems, may be more vulnerable in the regeneration phase. in situations where heterogeneity in N availability is reduced by atmospheric N deposition, on sandy soils, or in montane areas. Critical loads are effect thresholds for N deposition. and the critical load concept has helped European governments make progress toward reducing N loads on sensitive ecosystems. More needs to be done in Europe and North America. especially for the more sensitive ecosystem types. including several ecosystems of high conservation importance. The results of this assessment Show that the Vulnerable regions outside Europe and North America which have not received enough attention are ecoregions in eastern and Southern Asia (China, India), an important part of the mediterranean ecoregion (California, southern Europe). and in the coming decades several subtropical and tropical parts of Latin America and Africa. Reductions in plant diversity by increased atmospheric N deposition may be more widespread than first thought, and more targeted Studies are required in low background areas, especially in the G200 ecoregions

Race and Sex Differences in QRS Interval and Associated Outcome Among Patients with Left Ventricular Systolic Dysfunction

BACKGROUND: Prolonged QRS duration is associated with increased mortality among heart failure patients, but race or sex differences in QRS duration and associated effect on outcomes are unknown. METHODS AND RESULTS: We investigated QRS duration and morphology among 2463 black and white patients with heart failure and left ventricular ejection fraction ≤35% who underwent coronary angiography and 12-lead electrocardiography at Duke University Hospital from 1995 through 2011. We used multivariable Cox regression models to assess the relationship between QRS duration and all-cause mortality and investigate race-QRS and sex-QRS duration interaction. Median QRS duration was 105 ms (interquartile range [IQR], 92-132) with variation by race and sex (P<0.001). QRS duration was longest in white men (111 ms; IQR, 98-139) followed by white women (108 ms; IQR, 92-140), black men (100 ms; IQR, 91-120), and black women (94 ms; IQR, 86-118). Left bundle branch block was more common in women than men (24% vs 14%) and in white (21%) versus black individuals (12%). In black patients, there was a 16% increase in risk of mortality for every 10 ms increase in QRS duration up to 112 ms (hazard ratio, 1.16; 95% CI, 1.07, 1.25) that was not present among white patients (interaction, P=0.06). CONCLUSIONS: Black individuals with heart failure had a shorter QRS duration and more often had non-left bundle branch block morphology than white patients. Women had left bundle branch block more commonly than men. Among black patients, modest QRS prolongation was associated with increased mortality

Incremental testing of the Community Multiscale Air Quality (CMAQ) modeling system version 4.7

This paper describes the scientific and structural updates to the latest release of the Community Multiscale Air Quality (CMAQ) modeling system version 4.7 (v4.7) and points the reader to additional resources for further details. The model updates were evaluated relative to observations and results from previous model versions in a series of simulations conducted to incrementally assess the effect of each change. The focus of this paper is on five major scientific upgrades: (a) updates to the heterogeneous N&lt;sub&gt;2&lt;/sub&gt;O&lt;sub&gt;5&lt;/sub&gt; parameterization, (b) improvement in the treatment of secondary organic aerosol (SOA), (c) inclusion of dynamic mass transfer for coarse-mode aerosol, (d) revisions to the cloud model, and (e) new options for the calculation of photolysis rates. Incremental test simulations over the eastern United States during January and August 2006 are evaluated to assess the model response to each scientific improvement, providing explanations of differences in results between v4.7 and previously released CMAQ model versions. Particulate sulfate predictions are improved across all monitoring networks during both seasons due to cloud module updates. Numerous updates to the SOA module improve the simulation of seasonal variability and decrease the bias in organic carbon predictions at urban sites in the winter. Bias in the total mass of fine particulate matter (PM&lt;sub&gt;2.5&lt;/sub&gt;) is dominated by overpredictions of unspeciated PM&lt;sub&gt;2.5&lt;/sub&gt; (PM&lt;sub&gt;other&lt;/sub&gt;) in the winter and by underpredictions of carbon in the summer. The CMAQv4.7 model results show slightly worse performance for ozone predictions. However, changes to the meteorological inputs are found to have a much greater impact on ozone predictions compared to changes to the CMAQ modules described here. Model updates had little effect on existing biases in wet deposition predictions