The Use of a Large, Extensive Green Roof for Multiple Research Objectives

The Green Roof on the Onondaga County Convention Center in Syracuse, NY is planted with several varieties of sedum over an area of 0.56 hectares. The roof was constructed in 2011, and has been instrumented with sensors to enable research and education over an extended period. The purpose of the current work on this roof is to quantify its performance with respect to water storage and energy transfer, and to identify chemical constituents in the runoff that might be contributed by the growth medium. The scope of the project also includes a number of measurements on traditional roofs in the vicinity of the Convention Center as controls. Experimental methods include measurements with temperature probes installed in different layers of the green roof, a meteorological station, soil moisture sensors positioned around the roof, and an electromagnetic flowmeter connected to the roof drains. Chemical analysis of incoming precipitation and stormwater runoff is conducted by ion chromatography. Besides the research underway, an educational website is under construction that shows realtime data from many of the instruments. The website includes explanations of the energy flow through the roof layers, water flow and water storage in the growth medium, and runoff through the roof drains. The website is designed for use by teachers of K-12 and undergraduate courses to enable students to learn about green roofs as a tool for managing urban stormwater. Results of the research show that heat flow through the roof is largely controlled by extruded polystyrene insulation below the growth medium, and that the growth medium is not a major barrier to heat flow. Substantial amounts of stormwater can be stored by the roof, as long as the growth medium is able to dry somewhat between storms. Precipitation events in close succession may cause the growth medium to stay saturated, preventing the roof from storing additional stormwater. The results of this work are important for assisting designers and engineers to improve the performance of green roofs

The influence of reef topography on storm-driven sand flux

Natural formations of rock and coral can support geologically controlled beaches, where the beach dynamics are significantly influenced by these structures. However, little is known about how alongshore variations in geological controls influence beach morphodynamics. Therefore, in this study we focus on the storm response of a beach (Yanchep in south Western Australia) that has strong alongshore variation in the level of geological control because of the heterogeneous calcarenite limestone reef. We used a modified version of XBeach to simulate the beach morphodynamics during a significant winter storm event. We find that the longshore variation in topography of the reef resulted in: (1) strong spatial difference in current distribution, including areas with strong currents jets; and (2) significant alongshore differences in sand flux, with larger fluxes in areas strongly geologically controlled by reefs. In particular, this resulted in enhanced beach erosion at the boundary of the reef where strong currents jet-exited the nearshore

First ROV exploration of the Perth Canyon: Canyon setting, faunal observations, and anthropogenic impacts.

© The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Trotter, J. A., Pattiaratchi, C., Montagna, P., Taviani, M., Falter, J., Thresher, R., Hosie, A., Haig, D., Foglini, F., Hua, Q., & McCulloch, M. T. First ROV exploration of the Perth Canyon: Canyon setting, faunal observations, and anthropogenic impacts. Frontiers in Marine Science, 6, (2019):173, doi:10.3389/fmars.2019.00173.This study represents the first ROV-based exploration of the Perth Canyon, a prominent submarine valley system in the southeast Indian Ocean offshore Fremantle (Perth), Western Australia. This multi-disciplinary study characterizes the canyon topography, hydrography, anthropogenic impacts, and provides a general overview of the fauna and habitats encountered during the cruise. ROV surveys and sample collections, with a specific focus on deep-sea corals, were conducted at six sites extending from the head to the mouth of the canyon. Multi-beam maps of the canyon topography show near vertical cliff walls, scarps, and broad terraces. Biostratigraphic analyses of the canyon lithologies indicate Late Paleocene to Late Oligocene depositional ages within upper bathyal depths (200–700 m). The video footage has revealed a quiescent ‘fossil canyon’ system with sporadic, localized concentrations of mega- and macro-benthos (∼680–1,800 m), which include corals, sponges, molluscs, echinoderms, crustaceans, brachiopods, and worms, as well as plankton and nekton (fish species). Solitary (Desmophyllum dianthus, Caryophyllia sp., Vaughanella sp., and Polymyces sp.) and colonial (Solenosmilia variabilis) scleractinians were sporadically distributed along the walls and under overhangs within the canyon valleys and along its rim. Gorgonian, bamboo, and proteinaceous corals were present, with live Corallium often hosting a diverse community of organisms. Extensive coral graveyards, discovered at two disparate sites between ∼690–720 m and 1,560–1,790 m, comprise colonial (S. variabilis) and solitary (D. dianthus) scleractinians that flourished during the last ice age (∼18 ka to 33 ka BP). ROV sampling (674–1,815 m) spanned intermediate (Antarctic Intermediate Water) and deep waters (Upper Circumpolar Deep Water) with temperatures from ∼2.5 to 6°C. Seawater CTD profiles of these waters show consistent physical and chemical conditions at equivalent depths between dive sites. Their carbonate chemistry indicate supersaturation (Ωcalcite ∼ 1.3–2.2) with respect to calcite, but mild saturation to undersaturation (Ωaragonite ∼ 0.8–1.4) of aragonite; notably some scleractinians were found living below the aragonite saturation horizon (∼1,000 m). Seawater δ13C and nuclear bomb produced Δ14C compositions decrease in the upper canyon waters by up to ∼0.8‰ (<800 m) and 95‰ (<500 m), respectively, relative to measurements taken nearby in 1978, reflecting the ingress of anthropogenic carbon into upper intermediate waters.This work was supported by research funding from the Australian Research Council to MM (FL120100049) and JT (FT160100259), the Italian National Programme of Antarctic Research (PNRA16-00069 Graceful Project) to PM and MT, the Australian Institute of Nuclear Science and Engineering to MM, JT, JF, RT, MT, PM (AINSE Award 16/009). Supplementary oceanographic data are funded through Integrated Marine Observing System (IMOS) supported by the Australian Government

Shifting perspectives on coastal impacts and adaptation

The Intergovernmental Panel on Climate Change reports reflect evolving attitudes in adapting to sea-level rise by taking a systems approach and recognizing that multiple responses exist to achieve a less hazardous coast.info:eu-repo/semantics/publishedVersio

Characterization of a pathogenic variant in the ABCD1 gene through protein molecular modeling

Background. The ATP-binding cassette, subfamily D, member 1 (ABCD1) protein is a peroxisomal half-transporter that allows for very long chain fatty acid (VLCFA) degradation. Pathogenic variants of ABCD1 cause VLCFAs to build up in various tissues and bodily fluids, resulting in a disorder called X-linked adrenoleukodystrophy (X-ALD). This disorder is most commonly marked by adrenocortical insufficiency and high VLCFA concentration, and has varying levels of neurological involvement depending on phenotype. For example, the Addison-only form of X-ALD has no neurological impact, while the cerebral form of X-ALD often causes severe sensory loss, motor function impairment, cognitive decline, and death. Methods. A newly characterized and suspected pathogenic variant in ABCD1 was analyzed using our protein informatics platform (PIP). Personalized protein-level molecular studies were completed on genetic testing data, complementing the analysis and clinical study. Results. A case of adult onset adrenomyeloneuropathy (AMN) and a novel ABCD1 variant are presented. The unique ABCD1 protein is discussed, and the proband’s case is compared to existing reports of AMN. Conclusions. Data fusion from multiple sources was combined in a comprehensive approach yielding an enriched assessment of the patient’s disease and prognosis. Molecular modeling was performed on the variant to better characterize its clinical significance and confirm pathogenicity

A Study of Nuclear Transcription Factor-Kappa B in Childhood Autism

BACKGROUND: Several children with autism show regression in language and social development while maintaining normal motor milestones. A clear period of normal development followed by regression and subsequent improvement with treatment, suggests a multifactorial etiology. The role of inflammation in autism is now a major area of study. Viral and bacterial infections, hypoxia, or medication could affect both foetus and infant. These stressors could upregulate transcription factors like nuclear factor kappa B (NF-κB), a master switch for many genes including some implicated in autism like tumor necrosis factor (TNF). On this hypothesis, it was proposed to determine NF-κB in children with autism. METHODS: Peripheral blood samples of 67 children with autism and 29 control children were evaluated for NF-κB using electrophoretic mobility shift assay (EMSA). A phosphor imaging technique was used to quantify values. The fold increase over the control sample was calculated and statistical analysis was carried out using SPSS 15. RESULTS: We have noted significant increase in NF-κB DNA binding activity in peripheral blood samples of children with autism. When the fold increase of NF-κB in cases (n = 67) was compared with that of controls (n = 29), there was a significant difference (3.14 vs. 1.40, respectively; p<0.02). CONCLUSION: This finding has immense value in understanding many of the known biochemical changes reported in autism. As NF-κB is a response to stressors of several kinds and a master switch for many genes, autism may then arise at least in part from an NF-κB pathway gone awry

Influence of offshore oil and gas structures on seascape ecological connectivity.

Offshore platforms, subsea pipelines, wells and related fixed structures supporting the oil and gas (O&G) industry are prevalent in oceans across the globe, with many approaching the end of their operational life and requiring decommissioning. Although structures can possess high ecological diversity and productivity, information on how they interact with broader ecological processes remains unclear. Here, we review the current state of knowledge on the role of O&G infrastructure in maintaining, altering or enhancing ecological connectivity with natural marine habitats. There is a paucity of studies on the subject with only 33 papers specifically targeting connectivity and O&G structures, although other studies provide important related information. Evidence for O&G structures facilitating vertical and horizontal seascape connectivity exists for larvae and mobile adult invertebrates, fish and megafauna; including threatened and commercially important species. The degree to which these structures represent a beneficial or detrimental net impact remains unclear, is complex and ultimately needs more research to determine the extent to which natural connectivity networks are conserved, enhanced or disrupted. We discuss the potential impacts of different decommissioning approaches on seascape connectivity and identify, through expert elicitation, critical knowledge gaps that, if addressed, may further inform decision making for the life cycle of O&G infrastructure, with relevance for other industries (e.g. renewables). The most highly ranked critical knowledge gap was a need to understand how O&G structures modify and influence the movement patterns of mobile species and dispersal stages of sessile marine species. Understanding how different decommissioning options affect species survival and movement was also highly ranked, as was understanding the extent to which O&G structures contribute to extending species distributions by providing rest stops, foraging habitat, and stepping stones. These questions could be addressed with further dedicated studies of animal movement in relation to structures using telemetry, molecular techniques and movement models. Our review and these priority questions provide a roadmap for advancing research needed to support evidence-based decision making for decommissioning O&G infrastructure

Reaction of substituted pyrimidines with photochemically generated t-BuO• radicals

386-390Humans are exposed to various organic peroxides through chemical, pharmaceutical and cosmetic products. On photolysis, these peroxides produce alkoxyl radicals and hydroxyl radicals. The reaction of •OH radicals with DNA and its constituents have been extensively studied, but very little is known about the reactions of alkoxyl radicals with DNA and its constituents. In view of this, the oxidation of pyrimidine bases viz., thymine, uracil, cytosine, 5-bromouracil, 6-methyluracil and 1, 3-dimethyluracil by t-BuO• radicals in aqueous solution at pH 7.5 has been carried out. The reaction between pyrimidine and t-BuO• is followed by measuring the absorbance of pyrimidine at the respective λ max. The rates of oxidation of pyrimidines are calculated from the plot of absorbance vs time. The rates of oxidation of pyrimidines have been found to increase with increase in [t-BuOOH], [pyrimidine] and light intensity. The quantum yields are calculated from the initial rates of oxidation of pyrimidine and the measured light intensity at 254 nm the wavelength at which t-BuOOH is activated to give radicals. The quantum yields are found to depend on [pyrimidine] as well as on [t-BuOOH] while they are independent of light intensity. The product analysis was carried out on HPLC with UV-visible detector. The corresponding 5,6-dihydroxypyrimidine and isobarbituric acid have been identified by comparing the retention times of the authentic samples. On the basis of experimental results and product analysis, it is suggested that t-BuOOH on photolysis gives t-BuO• radical, which initiates the reaction by adding to C (5) or C (6) position of pyrimidine base, leading to the formation of pyrimidine base radical via hydrolysis. The pyrimidine radical further reacts with t-BuO• radical to give the final product. This study predicts the probable transient pyrimidine radicals

The influence of coastal reefs on spatial variability in seasonal sand fluxes

The effect of coastal reefs on seasonal erosion and accretion was investigated on 2 km of sandy coast. The focus was on how reef topography drives alongshore variation in the mode and magnitude of seasonal beach erosion and accretion; and the effect of intra- and inter-annual variability in metocean conditions on seasonal sediment fluxes. This involved using monthly and 6-monthly surveys of the beach and coastal zone, and comparison with a range of metocean conditions including mean sea level, storm surges, wind, and wave power. Alongshore ‘zones’ were revealed with alternating modes of sediment transport in spring and summer compared to autumn and winter. Zone boundaries were determined by rock headlands and reefs interrupting littoral drift; the seasonal build up of sand over the reef in the south zone; and current jets generated by wave set-up over reefs. In spring and summer, constant sand resuspension and northerly littoral drift due to sea breezes allowed a sand ramp to form in the South Zone so that sand overtopped the reef to infill the lagoon. This blocked the main pathway for sand supply to downdrift zones which subsequently eroded. In autumn and winter, with the dominance of northwesterly storms and reversal in the direction of littoral drift, the South Zone eroded and sand travelled through the lagoon in the current jet to nourish the northern beaches. Inter-annual and seasonal variation in sea level, storm frequency and intensity, together with pulsational effects of local sand fluxes at Yanchep due to inter-seasonal switching in the direction of littoral drift determined marked differences in the volumes of seasonal sand transport. These seasonal ‘sediment zones’ highlighted interesting and unexplored parallels between coasts fronted seaward by coral reefs and rock formations

Medicinal plants commonly used against cancer in traditional medicine formulae in Sri Lanka

Cancer is a global burden. In low- and middle-income countries around 70% of deaths are due to cancer. For a number of years natural products have been a good source of agents for combatting cancer and plants have played a huge role in anti-cancer product development. For many centuries, indigenous cultures around the world have used traditional herbal medicine to treat a myriad of diseases including cancer. In Sri Lanka, a number of plants have been reported to have anti-cancer properties and some of the commonly used plants are described in this review with an account of their compounds and modes of action. Only a small number of the plants in Sri Lanka have been tested for their bioactivity and more research is required to determine their medicinal activity with the aim of developing novel drugs to fight this disease. Keywords: Plants with anti-cancer properties, Traditional medicine, Cance