Genetic Traces of Recent Long-Distance Dispersal in a Predominantly Self-Recruiting Coral

Understanding of the magnitude and direction of the exchange of individuals among geographically separated subpopulations that comprise a metapopulation (connectivity) can lead to an improved ability to forecast how fast coral reef organisms are likely to recover from disturbance events that cause extensive mortality. Reef corals that brood their larvae internally and release mature larvae are believed to show little exchange of larvae over ecological times scales and are therefore expected to recover extremely slowly from large-scale perturbations.Using analysis of ten DNA microsatellite loci, we show that although Great Barrier Reef (GBR) populations of the brooding coral, Seriatopora hystrix, are mostly self-seeded and some populations are highly isolated, a considerable amount of sexual larvae (up to approximately 4%) has been exchanged among several reefs 10 s to 100 s km apart over the past few generations. Our results further indicate that S. hystrix is capable of producing asexual propagules with similar long-distance dispersal abilities (approximately 1.4% of the sampled colonies had a multilocus genotype that also occurred at another sampling location), which may aid in recovery from environmental disturbances.Patterns of connectivity in this and probably other GBR corals are complex and need to be resolved in greater detail through genetic characterisation of different cohorts and linkage of genetic data with fine-scale hydrodynamic models

On the formation and spreading of the Bass Strait cascade

The Bass Strait cascade is a wintertime downwelling caused by cooling of the shallow waters of Bass Strait. During winter, a front separates the cold shelf water from the waters of the Tasman Sea. Continuous horizontal bands of downwelled water leading oceanward beneath the front imply that it can be transgressed near the bottom anywhere along its length. However, by far the greatest volume crosses at a breach at the northern end. Measured currents in eastern Bass Strait fit a predictable pattern: eastward toward the front, then as the front is approached, swinging north towards the breach. Flow northwards along the slope after downwelling is quantified using a simple analytic model. Cascade water found in the “far-field” was found only in small patches. One such patch was found to possess motion independent from the mean flow in which it was embedded

Circulation in the Great Barrier Reef Lagoon using numerical tracers and in situ data

Numerical hydrodynamic models of the northeastern Queensland shelf, forced by regional winds and modelled boundary currents in the northern Coral Sea, are used to provide improved estimates of general flow trajectories and water residence times within the Great Barrier Reef (GBR) shelf system. Model performance was checked against a limited set of current metre records obtained at Lark Reef (16°S) and the Ribbon Reefs (15.5°S). Estimates of water parcel trajectories are derived from a series of numerical tracer experiments, with daily releases of neutrally buoyant, un-reactive particles at 320 sites along the coast between Cape York (10.7°S) and Hervey Bay (25°S). Flow trajectories and residence times for tracer particles introduced to the GBR lagoon in the southern—ca. 22°S, central—19°S, and northern reef—14°S are emphasised. For purposes of the analysis, the year was divided into two seasons based on mean alongshore current direction. Most coastal sourced tracers entering the central GBR lagoon between 16° and 20°S during the northward-current season (January–August) primarily encounter the outer-shelf reef matrix after exiting the lagoon at its northern “head” (nominally 16°S), after 50–150 days. Up to 70% of tracer particles entering in the southward-current season (August–December) eventually crossed the lagoon to the outer-shelf reef matrix, with median crossing times between 20 and 330 days. During favourable wind conditions, tracers introduced at the coast may move rapidly across the lagoon into the reef matrix. The tracer experiments indicate that most coastal-sourced tracers entering the GBR lagoon remain near the coast for extended periods of time, moving north and south in a coastal band. Residence times for conservative tracer particles (and implied residence times for water-borne materials) within the GBR shelf system ranged from ca. 1 month to 1 year—time frames that are very long relative to development times of planktonic larvae and cycling times for nutrient materials in the water column, implying they are transformed long before reaching the outer reef matrix

Reduction of the threading edge disclocation density in AlGaN epilayers by GaN nucleation

Al0.15Ga0.85N films were grown on sapphire (0001) by metalorganic vapor phase epitaxy using thin low-temperature GaN nucleation layers. After etching in flowing hydrogen and ammonia, these nucleation layers exhibit a three-dimensional facetted structure. A systematical variation of the growth temperature and V/III-ratio of the subsequent AlGaN layers was carried out in order to optimize the overgrowth resulting in smooth surfaces as revealed by atomic force microscopy. An effective reduction of the threading edge dislocation density in the overgrowing AlGaN layers is proven by high-resolution X-ray diffraction

A biophysical model to assess the trade-off between larval recruitment and catch in southern Australia's largest prawn fishery

Data from stock assessment surveys, published research and climate sensors were linked to model the interaction between fishing, physical‐oceanographic processes and spatial patterns of larval settlement for western king prawn [Penaeus (Melicertus) latisulcatus]. This information was used to evaluate the trade‐off between larval recruitment and catch during fishing periods that demand high prices but coincide with spawning. Total rates of larval settlement were maximized when tidal currents and atmospheric physical‐forcing components were coupled with simulations of larval swimming behaviour under average gulf temperatures. Average gulf temperatures sustained longer larval durations and increased larval settlement rates by over 12% compared with warmer gulf conditions simulated under a scenario of global warming. Reproductive data coupled with outputs from the biophysical model identified consistent inter‐annual patterns in the areas contributing to larval settlement success. Areas located in the north‐east, and central‐west of the fishery, consistently contributed to over 40% of all larvae reaching a settlement in each year. Harvest sensitivity analyses indicated that changes in the spatial patterns of pre‐Christmas fishing could lead to improvements in overall rates of the larval settlement while maintaining or improving the levels of catch. Future studies to refine the model inputs relating to physical processes, larval behaviour and mortality rates for P. latisulcatus coupled with surveys of juvenile prawn abundance to ground truth the modelled predictions, would allow stock recruitment relationships to be more closely examined and inform adaptive management of the fishery in the future.Lachlan Mcleay, Mark Doubell, Shane Roberts, Cameron Dixon, Lorenzo Andreacchio, Charles James, John Luick, John Middleto

Oceanographic controls on shallow-water temperate carbonate sedimentation: Spencer Gulf, South Australia

Spencer Gulf is a large (ca 22 000 km²), shallow (<60 m water depth) embayment with active heterozoan carbonate sedimentation. Gulf waters are metahaline (salinities 39 to 47‰) and warm-temperate (ca 12 to 28°C) with inverse estuarine circulation. The integrated approach of facies analysis paired with high-resolution, monthly oceanographic data sets is used to pinpoint controls on sedimentation patterns with more confidence than heretofore possible for temperate systems. Biofragments – mainly bivalves, benthic foraminifera, bryozoans, coralline algae and echinoids – accumulate in five benthic environments: luxuriant seagrass meadows, patchy seagrass sand flats, rhodolith pavements, open gravel/sand plains and muddy seafloors. The biotic diversity of Spencer Gulf is remarkably high, considering the elevated seawater salinities. Echinoids and coralline algae (traditionally considered stenohaline organisms) are ubiquitous. Euphotic zone depth is interpreted as the primary control on environmental distribution, whereas seawater salinity, temperature, hydrodynamics and nutrient availability are viewed as secondary controls. Luxuriant seagrass meadows with carbonate muddy sands dominate brightly lit seafloors where waters have relatively low nutrient concentrations (ca 0 to 1mg Chl-a m⁻³). Low-diversity bivalve-dominated deposits occur in meadows with highest seawater salinities and temperatures (43 to 47‰, up to 28°C). Patchy seagrass sand flats cover less-illuminated seafloors. Open gravel/sand plains contain coarse bivalve–bryozoan sediments, interpreted as subphotic deposits, in waters with near normal marine salinities and moderate trophic resources (0.5 to 1.6 mg Chl-a m⁻³) to support diverse suspension feeders. Rhodolith pavements (coralline algal gravels) form where seagrass growth is arrested, either because of decreased water clarity due to elevated nutrients and associated phytoplankton growth (0.6 to 2 mg Chl-a m⁻³), or bottom waters that are too energetic for seagrasses (currents up to 2 m sec⁻¹). Muddy seafloors occur in low-energy areas below the euphotic zone. The relationships between oceanographic influences and depositional patterns outlined in Spencer Gulf are valuable for environmental interpretations of other recent and ancient (particularly Neogene) high-salinity and temperate carbonate systems worldwide.Laura G. O’Connell, Noel P. James, Mark Doubell, John F. Middleton, John Luick, David R. Currie and Yvonne Bon

A stable isotope biomarker of marine food intake captures associations between n-3 fatty acid intake and chronic disease risk in a Yup'ik study population, and detects new associations with blood pressure and adiponectin.

The nitrogen isotope ratio (δ(15)N) of RBCs has been proposed as a biomarker of marine food intake in Yup'ik people based on strong associations with RBC eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). However, EPA and DHA derive from marine fats, whereas elevated δ(15)N derives from marine protein, and these dietary components may have different biologic effects. Whether δ(15)N is similarly associated with chronic disease risk factors compared with RBC EPA and DHA is not known. We used covariate-adjusted linear models to describe biomarker associations with chronic disease risk factors in Yup'ik people, first in a smaller (n = 363) cross-sectional study population using RBC EPA, DHA, and δ(15)N, and then in a larger (n = 772) cross-sectional study population using δ(15)N only. In the smaller sample, associations of RBC EPA, DHA, and δ(15)N with obesity and chronic disease risk factors were similar in direction and significance: δ(15)N was positively associated with total, HDL, and LDL cholesterol, apolipoprotein A-I, and insulin-like growth factor binding protein-3 (IGFBP-3), and inversely associated with triglycerides. Based on comparisons between covariate-adjusted β-coefficients, EPA was more strongly associated with circulating lipids and lipoproteins, whereas δ(15)N was more strongly associated with adipokines, the inflammatory marker interleukin-6, and IGFBP-3. In the larger sample there were new findings for this population: δ(15)N was inversely associated with blood pressure and there was a significant association (with inverse linear and positive quadratic terms) with adiponectin. In conclusion, δ(15)N is a valid measure for evaluating associations between EPA and DHA intake and chronic disease risk in Yup'ik people and may be used in larger studies. By measuring δ(15)N, we report beneficial associations of marine food intake with blood pressure and adiponectin, which may contribute to a lower incidence of some chronic diseases in Yup'ik people