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Thesis (M.A.)--Boston Universit

The match/mismatch hypothesis and the feeding success of fish larvae in ice-covered southeastern Hudson Bay

We studied the synchronism between the seasonal occurrence of fish larvae and their prey in ice-covered southeastern Hudson Bay, Canada, in spring 1988, 1989 and 1990. Arctic cod #Boreogadus saida and sand lance #Ammodytes sp. larvae hatched several weeks before ice break-up and fed primarily on copepod nauplii. The timing of 50% yolk resorption was the same every year (11 to 18 May for Arctic cod and 5 to 11 June for sand lance) but the availability of copepod nauplii varied substantially between years, both in magnitude (7-fold) and timing (4 to 6 wk). Interannual differences in the under-ice abundance of nauplii were linked to variations in the abundance of female cyclopoid copepods, and appeared unrelated to the timing of the ice-algal or phytoplankton blooms. Interannual differences (2- to 4-fold) in the feeding success of fish larvae (percent feeding incidence at length and mean feeding ratio at length) were related to the availability of copepod nauplii. Consistent with the match/mismatch hypothesis, the fixity of the spawning season in relation to a variable cycle of prey abundance accounted for the observed variations in feeding success and apparent growth (length at date) of fish larvae. Yet, in this particular ecosystem, a match or mismatch between Arctic cod or sand lance larvae and their prey may depend more on the dynamics of cyclopoid copepods during the previous winter than on the timing of the spring algal blooms. (Résumé d'auteur

CHEOPS performance for exomoons: The detectability of exomoons by using optimal decision algorithm

Many attempts have already been made for detecting exomoons around transiting exoplanets but the first confirmed discovery is still pending. The experience that have been gathered so far allow us to better optimize future space telescopes for this challenge, already during the development phase. In this paper we focus on the forthcoming CHaraterising ExOPlanet Satellite (CHEOPS),describing an optimized decision algorithm with step-by-step evaluation, and calculating the number of required transits for an exomoon detection for various planet-moon configurations that can be observable by CHEOPS. We explore the most efficient way for such an observation which minimizes the cost in observing time. Our study is based on PTV observations (photocentric transit timing variation, Szab\'o et al. 2006) in simulated CHEOPS data, but the recipe does not depend on the actual detection method, and it can be substituted with e.g. the photodynamical method for later applications. Using the current state-of-the-art level simulation of CHEOPS data we analyzed transit observation sets for different star-planet-moon configurations and performed a bootstrap analysis to determine their detection statistics. We have found that the detection limit is around an Earth-sized moon. In the case of favorable spatial configurations, systems with at least such a large moon and with at least Neptune-sized planet, 80\% detection chance requires at least 5-6 transit observations on average. There is also non-zero chance in the case of smaller moons, but the detection statistics deteriorates rapidly, while the necessary transit measurements increase fast. (abridged)Comment: 32 pages, 14 figures, accepted for publication in PAS

Analysis of Three-Dimensional Protein Images

A fundamental goal of research in molecular biology is to understand protein structure. Protein crystallography is currently the most successful method for determining the three-dimensional (3D) conformation of a protein, yet it remains labor intensive and relies on an expert's ability to derive and evaluate a protein scene model. In this paper, the problem of protein structure determination is formulated as an exercise in scene analysis. A computational methodology is presented in which a 3D image of a protein is segmented into a graph of critical points. Bayesian and certainty factor approaches are described and used to analyze critical point graphs and identify meaningful substructures, such as alpha-helices and beta-sheets. Results of applying the methodologies to protein images at low and medium resolution are reported. The research is related to approaches to representation, segmentation and classification in vision, as well as to top-down approaches to protein structure prediction.Comment: See http://www.jair.org/ for any accompanying file

Impact of freshwater on a subarctic coastal ecosystem under seasonal sea ice (southeastern Hudson Bay, Canada) : 3. Feeding success of marine fish larvae

We monitored the feeding success (percent feeding incidence at length and mean feeding ratio at length) of Arctic cod (#Boreogadus saida) and sand lance (#Ammodytes sp. larvae in relation to prey density, light, temperature and potential predator density under the ice cover of southeastern Hudson Bay in the spring of 1988, 1989 and 1990. Both prey density and light limited larval fish feeding. The relationship between feeding success and actual food availability (nauplii density x irradiance) was adequately described by an Ivlev function which explained 64 and 76% of the variance in Arctic cod and sand lance feeding success respectively. By affecting both prey density and irradiance, the thickness of the Great Whale River plume (as defined by the depth of the 25 isohaline) was the main determinant of prey availability. Arctic cod and sand lance larvae stopped feeding when the depth of the 25 isohaline exceeded 9 m. Limitation of feeding success attributable to freshwater inputs occurred exclusively in 1988, the only time when the depth of the 25 isohaline exceeded the 9 m threshold. The close dependence of larval fish feeding success on the timing of the freshet and plume dynamics suggests a direct link between climate and survival of Arctic cod and sand lance larvae. The actual impact of climate fluctuations and/or hydro-electric developments on recruitment will depend on the fraction of the larval dispersal area of the two species that is affected by river plumes. (Résumé d'auteur

Optical Lattice Induced Light Shifts in an Yb Atomic Clock

We present an experimental study of the lattice induced light shifts on the 1S_0-3P_0 optical clock transition (v_clock~518 THz) in neutral ytterbium. The ``magic'' frequency, v_magic, for the 174Yb isotope was determined to be 394 799 475(35)MHz, which leads to a first order light shift uncertainty of 0.38 Hz on the 518 THz clock transition. Also investigated were the hyperpolarizability shifts due to the nearby 6s6p 3P_0 - 6s8p 3P_0, 6s8p 3P_2, and 6s5f 3F_2 two-photon resonances at 759.708 nm, 754.23 nm, and 764.95 nm respectively. By tuning the lattice frequency over the two-photon resonances and measuring the corresponding clock transition shifts, the hyperpolarizability shift was estimated to be 170(33) mHz for a linear polarized, 50 uK deep, lattice at the magic wavelength. In addition, we have confirmed that a circularly polarized lattice eliminates the J=0 - J=0 two-photon resonance. These results indicate that the differential polarizability and hyperpolarizability frequency shift uncertainties in a Yb lattice clock could be held to well below 10^-17.Comment: Accepted to PR

Kilohertz-resolution spectroscopy of cold atoms with an optical frequency comb

We have performed sub-Doppler spectroscopy on the narrow intercombination line of cold calcium atoms using the amplified output of a femtosecond laser frequency comb. Injection locking of a 657-nm diode laser with a femtosecond comb allows for two regimes of amplification, one in which many lines of the comb are amplified, and one where a single line is predominantly amplified. The output of the laser in both regimes was used to perform kilohertz-level spectroscopy. This experiment demonstrates the potential for high-resolution absolute-frequency spectroscopy over the entire spectrum of the frequency comb output using a single high-finesse optical reference cavity.Comment: 4 pages, 4 Figure

Measurement of excited-state transitions in cold calcium atoms by direct femtosecond frequency-comb spectroscopy

We apply direct frequency-comb spectroscopy, in combination with precision cw spectroscopy, to measure the ${\rm 4s4p} ^3P_1 \to {\rm 4s5s} ^3S_1$ transition frequency in cold calcium atoms. A 657 nm ultrastable cw laser was used to excite atoms on the narrow ($\gamma \sim 400$ Hz) ${\rm 4s^2} ^1S_0 \to {\rm 4s4p} ^3P_1$ clock transition, and the direct output of the frequency comb was used to excite those atoms from the ${\rm 4s4p} ^3P_1$ state to the ${\rm 4s5s} ^3S_1$ state. The resonance of this second stage was detected by observing a decrease in population of the ground state as a result of atoms being optically pumped to the metastable ${\rm 4s4p} ^3P_{0,2}$ states. The ${\rm 4s4p} ^3P_1 \to {\rm 4s5s} ^3S_1$ transition frequency is measured to be $\nu = 489 544 285 713(56)$ kHz; which is an improvement by almost four orders of magnitude over the previously measured value. In addition, we demonstrate spectroscopy on magnetically trapped atoms in the ${\rm 4s4p} ^3P_2$ state.Comment: 4 pages 5 figure