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Assessment of the causal linkages between forests and fish: implications for management and monitoring.
Understanding the causal links between riparian forests, streams, and salmonids is important to help understand the likely effects of forest management practices. Previous studies have identified three major causal pathways (Instream Cover, Light, and Hydrology) through which riparian forests influence streams, and ultimately stream fishes. To evaluate the potential importance of these pathways, I developed a conceptual model of how they can be described. From this I evaluated evidence in support of the influence of these pathways using available data on riparian forest, instream conditions, and size and abundance of age-1 or older coastal cutthroat trout. These data were derived from monitoring conducted in 50 small watersheds across the 110,000 ha of lands managed by the Washington State Department of Natural Resources on the western Olympic Peninsula. The study domain was centered on the Olympic Experimental State Forest (OESF), where forest conditions primary represent previously harvested younger second growth forests (<80 years old). Additional monitoring data from 11 unharvested watersheds were added from the OESF (n=2), the Olympic National Park (n=4), and the Olympic National Forest (n=5) to increase the range of diversity of forest conditions in the sample. Overall the primary objective of this effort was to evaluate evidence in support of causal pathways through which forest conditions influence streams and fish in the study area. Insights gained from this effort are intended to inform future monitoring and management within the OESF.
Results of analyses evaluating statistical relationships among available indicators provided support for all three of the pathways (Instream Cover, Light, and Hydrology) in the model as well as the presence of self-thinning (a density dependent process where fish reach an equilibrium between size and abundance) in age-1 and older cutthroat. Stream depth was one of the most important factors for age-1 or older cutthroat trout on the OESF. Overall, the support for the Light Pathway and instream wood of the Instream Cover Pathway were less important than expected. This may be due to the limited range of conditions in canopy coverage (all watersheds had heavy shading) and instream wood (potentially reduced volumes of wood throughout the OESF). The lack of watersheds with lower canopy cover, higher volumes of instream wood, and deeper stream depths may be an indication of the slow rate of recovery under passive restoration alone
Steady-state modulation of voltage-gated K+ channels in rat arterial smooth muscle by cyclic AMP-dependent protein kinase and protein phosphatase 2B
Voltage-gated potassium channels (Kv) are important regulators of membrane potential in vascular smooth muscle cells, which is integral to controlling intracellular Ca2+ concentration and regulating vascular tone. Previous work indicates that Kv channels can be modulated by receptor-driven alterations of cyclic AMP-dependent protein kinase (PKA) activity. Here, we demonstrate that Kv channel activity is maintained by tonic activity of PKA. Whole-cell recording was used to assess the effect of manipulating PKA signalling on Kv and ATP-dependent K+ channels of rat mesenteric artery smooth muscle cells. Application of PKA inhibitors, KT5720 or H89, caused a significant inhibition of Kv currents. Tonic PKA-mediated activation of Kv appears maximal as application of isoprenaline (a β-adrenoceptor agonist) or dibutyryl-cAMP failed to enhance Kv currents. We also show that this modulation of Kv by PKA can be reversed by protein phosphatase 2B/calcineurin (PP2B). PKA-dependent inhibition of Kv by KT5720 can be abrogated by pre-treatment with the PP2B inhibitor cyclosporin A, or inclusion of a PP2B auto-inhibitory peptide in the pipette solution. Finally, we demonstrate that tonic PKA-mediated modulation of Kv requires intact caveolae. Pre-treatment of the cells with methyl-β-cyclodextrin to deplete cellular cholesterol, or adding caveolin-scaffolding domain peptide to the pipette solution to disrupt caveolae-dependent signalling each attenuated PKA-mediated modulation of the Kv current. These findings highlight a novel, caveolae-dependent, tonic modulatory role of PKA on Kv channels providing new insight into mechanisms and the potential for pharmacological manipulation of vascular tone
Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families
The microbes that inhabit particular environments must be able to perform molecular functions that provide them with a competitive advantage to thrive in those environments. As most molecular functions are performed by proteins and are conserved between related proteins, we can expect that organisms successful in a given environmental niche would contain protein families that are specific for functions that are important in that environment. For instance, the human gut is rich in polysaccharides from the diet or secreted by the host, and is dominated by Bacteroides, whose genomes contain highly expanded repertoire of protein families involved in carbohydrate metabolism. To identify other protein families that are specific to this environment, we investigated the distribution of protein families in the currently available human gut genomic and metagenomic data. Using an automated procedure, we identified a group of protein families strongly overrepresented in the human gut. These not only include many families described previously but also, interestingly, a large group of previously unrecognized protein families, which suggests that we still have much to discover about this environment. The identification and analysis of these families could provide us with new information about an environment critical to our health and well being
Measurement of the Proton Spin Structure Function g1p with a Pure Hydrogen Target
A measurement of the proton spin structure function g1p(x,Q^2) in
deep-inelastic scattering is presented. The data were taken with the 27.6 GeV
longitudinally polarised positron beam at HERA incident on a longitudinally
polarised pure hydrogen gas target internal to the storage ring. The kinematic
range is 0.021<x<0.85 and 0.8 GeV^2<Q^2<20 GeV^2. The integral
Int_{0.021}^{0.85} g1p(x)dx evaluated at Q0^2 of 2.5 GeV^2 is
0.122+/-0.003(stat.)+/-0.010(syst.).Comment: 7 pages, 3 figures, 1 table, RevTeX late
Measurement of Angular Distributions and R= sigma_L/sigma_T in Diffractive Electroproduction of rho^0 Mesons
Production and decay angular distributions were extracted from measurements
of exclusive electroproduction of the rho^0(770) meson over a range in the
virtual photon negative four-momentum squared 0.5< Q^2 <4 GeV^2 and the
photon-nucleon invariant mass range 3.8< W <6.5 GeV. The experiment was
performed with the HERMES spectrometer, using a longitudinally polarized
positron beam and a ^3He gas target internal to the HERA e^{+-} storage ring.
The event sample combines rho^0 mesons produced incoherently off individual
nucleons and coherently off the nucleus as a whole. The distributions in one
production angle and two angles describing the rho^0 -> pi+ pi- decay yielded
measurements of eight elements of the spin-density matrix, including one that
had not been measured before. The results are consistent with the dominance of
helicity-conserving amplitudes and natural parity exchange. The improved
precision achieved at 47 GeV,
reveals evidence for an energy dependence in the ratio R of the longitudinal to
transverse cross sections at constant Q^2.Comment: 15 pages, 15 embedded figures, LaTeX for SVJour(epj) document class
Revision: Fig. 15 corrected, recent data added to Figs. 10,12,14,15; minor
changes to tex
Beam-Induced Nuclear Depolarisation in a Gaseous Polarised Hydrogen Target
Spin-polarised atomic hydrogen is used as a gaseous polarised proton target
in high energy and nuclear physics experiments operating with internal beams in
storage rings. When such beams are intense and bunched, this type of target can
be depolarised by a resonant interaction with the transient magnetic field
generated by the beam bunches. This effect has been studied with the HERA
positron beam in the HERMES experiment at DESY. Resonances have been observed
and a simple analytic model has been used to explain their shape and position.
Operating conditions for the experiment have been found where there is no
significant target depolarisation due to this effect.Comment: REVTEX, 6 pages, 5 figure
Observation of a Coherence Length Effect in Exclusive Rho^0 Electroproduction
Exclusive incoherent electroproduction of the rho^0(770) meson from 1H, 2H,
3He, and 14N targets has been studied by the HERMES experiment at squared
four-momentum transfer Q**2>0.4 GeV**2 and positron energy loss nu from 9 to 20
GeV. The ratio of the 14N to 1H cross sections per nucleon, known as the
nuclear transparency, was found to decrease with increasing coherence length of
quark-antiquark fluctuations of the virtual photon. The data provide clear
evidence of the interaction of the quark- antiquark fluctuations with the
nuclear medium.Comment: RevTeX, 5 pages, 3 figure
Determination of the Deep Inelastic Contribution to the Generalised Gerasimov-Drell-Hearn Integral for the Proton and Neutron
The virtual photon absorption cross section differences [sigma_1/2-sigma_3/2]
for the proton and neutron have been determined from measurements of polarised
cross section asymmetries in deep inelastic scattering of 27.5 GeV
longitudinally polarised positrons from polarised 1H and 3He internal gas
targets. The data were collected in the region above the nucleon resonances in
the kinematic range nu < 23.5 GeV and 0.8 GeV**2 < Q**2 < 12 GeV**2. For the
proton the contribution to the generalised Gerasimov-Drell-Hearn integral was
found to be substantial and must be included for an accurate determination of
the full integral. Furthermore the data are consistent with a QCD
next-to-leading order fit based on previous deep inelastic scattering data.
Therefore higher twist effects do not appear significant.Comment: 6 pages, 3 figures, 1 table, revte
Measurement of the Neutron Spin Structure Function with a Polarized ^3He Target
Results are reported from the HERMES experiment at HERA on a measurement of
the neutron spin structure function in deep inelastic scattering
using 27.5 GeV longitudinally polarized positrons incident on a polarized
He internal gas target. The data cover the kinematic range
and . The integral evaluated at a fixed of is . Assuming Regge behavior at low , the first
moment is .Comment: 4 pages TEX, text available at
http://www.krl.caltech.edu/preprints/OAP.htm
The Flavor Asymmetry of the Light Quark Sea from Semi-inclusive Deep-inelastic Scattering
The flavor asymmetry of the light quark sea of the nucleon is determined in
the kinematic range 0.02<x<0.3 and 1 GeV^2<Q^2<10 GeV^2, for the first time
from semi-inclusive deep-inelastic scattering. The quantity
(dbar(x)-ubar(x))/(u(x)-d(x)) is derived from a relationship between the yields
of positive and negative pions from unpolarized hydrogen and deuterium targets.
The flavor asymmetry dbar-ubar is found to be non-zero and x dependent, showing
an excess of dbar over ubar quarks in the proton.Comment: 7 Pages, 2 figures, RevTeX format; slight revision in text, small
change in extraction of dbar-ubar and comparison with a high q2
parameterizatio
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