The Role of DNA Barcodes in Understanding and Conservation of Mammal Diversity in Southeast Asia

Southeast Asia is recognized as a region of very high biodiversity, much of which is currently at risk due to habitat loss and other threats. However, many aspects of this diversity, even for relatively well-known groups such as mammals, are poorly known, limiting ability to develop conservation plans. This study examines the value of DNA barcodes, sequences of the mitochondrial COI gene, to enhance understanding of mammalian diversity in the region and hence to aid conservation planning.DNA barcodes were obtained from nearly 1900 specimens representing 165 recognized species of bats. All morphologically or acoustically distinct species, based on classical taxonomy, could be discriminated with DNA barcodes except four closely allied species pairs. Many currently recognized species contained multiple barcode lineages, often with deep divergence suggesting unrecognized species. In addition, most widespread species showed substantial genetic differentiation across their distributions. Our results suggest that mammal species richness within the region may be underestimated by at least 50%, and there are higher levels of endemism and greater intra-specific population structure than previously recognized.DNA barcodes can aid conservation and research by assisting field workers in identifying species, by helping taxonomists determine species groups needing more detailed analysis, and by facilitating the recognition of the appropriate units and scales for conservation planning

Correlated Genetic and Ecological Diversification in a Widespread Southern African Horseshoe Bat

The analysis of molecular data within a historical biogeographical framework, coupled with ecological characteristics can provide insight into the processes driving diversification. Here we assess the genetic and ecological diversity within a widespread horseshoe bat Rhinolophus clivosus sensu lato with specific emphasis on the southern African representatives which, although not currently recognized, were previously described as a separate species R. geoffroyi comprising four subspecies. Sequence divergence estimates of the mtDNA control region show that the southern African representatives of R. clivosus s.l. are as distinct from samples further north in Africa than they are from R. ferrumequinum, the sister-species to R. clivosus. Within South Africa, five genetically supported geographic groups exist and these groups are corroborated by echolocation and wing morphology data. The groups loosely correspond to the distributions of the previously defined subspecies and Maxent modelling shows a strong correlation between the detected groups and ecoregions. Based on molecular clock calibrations, it is evident that climatic cycling and related vegetation changes during the Quaternary may have facilitated diversification both genetically and ecologically

Uncertainties in Systematics of Flying Squirrels (Pteromyini, Rodentia): Implications from a New Record from Vietnam

Taxonomic status of gliding squirrels belonging to the “northern” form of Petinomys setosus known from N. Burma and Thailand has been controversial. Earlier it was assigned to a distinct genus Olisthomys, however, currently it is synonymized with P. setosus s. str. from Sumatra and Borneo Islands, and Malay Peninsula. A squirrel collected in Song Hinh forest (Phu Yen Province, south central Vietnam) was examined genetically using sequence data on three mitochondrial genes (cytb, 12S, 16S) and one nuclear (IRBP) gene. The molecular results demonstrated that this squirrel is significantly divergent from the other examined specimens of Petinomys and belongs to a separate genetic lineage within the Glaucomyina clade. The obtained phylogenetic pattern supports recognition of Olisthomys as a valid genus; however, to confirm this conclusion a comprehensive taxonomic revision of Petinomys and related genera is required. The reconsideration of taxonomic position of the “northern” P. setosus also raises the question of the conservation status of this taxon

Uncertainties in Systematics of Flying Squirrels (Pteromyini, Rodentia): Implications from a New Record from Vietnam

Taxonomic status of gliding squirrels belonging to the “northern” form of Petinomys setosus known from N. Burma and Thailand has been controversial. Earlier it was assigned to a distinct genus Olisthomys, however, currently it is synonymized with P. setosus s. str. from Sumatra and Borneo Islands, and Malay Peninsula. A squirrel collected in Song Hinh forest (Phu Yen Province, south central Vietnam) was examined genetically using sequence data on three mitochondrial genes (cytb, 12S, 16S) and one nuclear (IRBP) gene. The molecular results demonstrated that this squirrel is significantly divergent from the other examined specimens of Petinomys and belongs to a separate genetic lineage within the Glaucomyina clade. The obtained phylogenetic pattern supports recognition of Olisthomys as a valid genus; however, to confirm this conclusion a comprehensive taxonomic revision of Petinomys and related genera is required. The reconsideration of taxonomic position of the “northern” P. setosus also raises the question of the conservation status of this taxon

Contribution to the ectoparasite fauna of rare and poor studied bat species of Southern Siberia

Forty-six chiropteran specimens from seven species have been captured on the territory of Southern Siberia. From them, 676 ectoparasites of 16 species (gamasid mites and insects) were collected. The bat fly Basilia mongolensis mongolensis Theodor, 1966 was found in Russia for the first time. The gamasid mites Spinturnix maedai Uchikawa et Wada, 1979 and Macronyssus hosonoi Uchikawa, 1979 have not previously been registered in Siberia. Several species have been recorded on new hosts. Three gamasid mite species of the genus Macronyssus are new to science. New data on the ecology of low-abundant and poorly studied bat species belonging to the Siberian-Far Eastern complex have been provided

Contribution to the ectoparasite fauna of rare and poor studied bat species of Southern Siberia

Forty-six chiropteran specimens from seven species have been captured on the territory of Southern Siberia. From them, 676 ectoparasites of 16 species (gamasid mites and insects) were collected. The bat fly Basilia mongolensis mongolensis Theodor, 1966 was found in Russia for the first time. The gamasid mites Spinturnix maedai Uchikawa et Wada, 1979 and Macronyssus hosonoi Uchikawa, 1979 have not previously been registered in Siberia. Several species have been recorded on new hosts. Three gamasid mite species of the genus Macronyssus are new to science. New data on the ecology of low-abundant and poorly studied bat species belonging to the Siberian-Far Eastern complex have been provided