Diversity analysis in snowball cauliflower (Brassica oleracea var. botrytis) using microsatellite markers

A set of 50 microsatellite markers were used for analysis of molecular diversity in 12 parental lines consisting of five Ogura CMS lines and 7 testers of snowball cauliflower (Brassica oleracea vas botrytis L.). Twelve markers were found to be polymorphic and the polymorphic information content (PIC) of the simple sequence repeat (SSR) markers ranged from 0.15 to as high as 0.83. The genetic dissimilarity based on simple matching coefficient for 12 genotypes ranged from 0.06 to 0.61 with an average of 0.36. The principal coordinate analysis based on molecular polymorphism, delineated the genotypes into five different groups. Genotype specific alleles was identified, which can be used as a reference for varietal identification as well as to identify the purity of the hybrid seeds in snowball cauliflower. The present study demonstrates the utility of microsatellite markers for estimating molecular diversity as well as genotype identification in snowball cauliflower

Genetic diversity and population structure of Fusarium fujikuroi causing Bakanae, an emerging disease of rice in India

45-52Bakanae caused by Fusarium fujikuroi (Nirenberg), is emerging as a serious threat for rice (Oryza sativa. L.) cultivation in India. In this study, 63 isolates of Fusarium fujikuroi isolated from symptomatic diseased plants were characterized for their morphology, pathogenicity and molecular variability using universal rice primers (URP). Of the 12 URPs used in the study, 6 primers could produce polymorphic fragments in all the isolates. The URP 17R primer was highly polymorphic (100%), whereas, the URP 1F primer produced 75% polymorphic fragments. A dendrogram obtained from the combined analysis of 6 URP primers categorized the isolates into four clusters, where most of the isolates from Punjab and Haryana were clustered separately. Mating type of the population was identified based on MAT-1 and MAT-2 region universal primers for Gibberella fujikuroi. Among the 63 isolates, 18 (28.57%) were identified as MAT-1 and 45 (71.42%) as MAT-2. The effective population number for mating type was 89% of the total population. Since the distribution frequencies of both mating types were not equal in the Indian population of F. fujikuroi, it could conclude that majority of the multiplication of isolates under field conditions was through asexual reproduction. However, the presence of both mating types in F. fujikuroi indicates that the population is also capable of sexual reproduction. Therefore, it is important to develop cultivars with inbuilt resistance to bakanae disease, taking into consideration the factors such as environmental conditions and variability of the pathogen in the area of intended cultivation

Effect of shade levels on production and quality of cordyline (Cordyline terminalis)

An investigation was carried out during 2013-14 to study the effect of different shade levels on the production and quality of cordyline (Cordyline terminalis Kunth.) under the subtropical condition of New Delhi, India. The effect of spectral control of light on physiology and vegetative development was evaluated at different crop growth stages. Shade nets did not only protect plants from high light intensities but also improved the vegetative growth, yield, vase life and quality of cordyline cut greens irrespective of shade level. Different shade levels modified microclimates, PAR, transmittance and canopy temperature. The shading improved plant characters like height, number of leaves, chlorophyll content, leaf area, fresh weight, harvest index and vase life. The plants grown under different shade levels showed improved photosynthetic activity and reduced transpiration rate. Plants grown under 50% shade level were taller, along with more number of leaves having longer petiole, chlorophyll content which can be attributed to higher photosynthetic rate, whereas harvest index and vase life was optimum. Overall, shade net with 50% shading was found best for commercial production of cordyline cut greens

Development of disposal sorbents for chloride removal from high-temperature coal-derived gases

The objective of this program is to develop alkali-based disposable sorbents capable of reducing HCl vapor concentrations to less than 1 ppmv in coal gas streams at temperatures in the range 400{degrees} to 750{degrees}C and pressures in the range 1 to 20 atm. The primary areas of focus of this program are investigation of different processes for fabricating the sorbents, testing their suitability for different reactor configurations, obtaining kinetic data for commercial reactor design, and updating the economics of the process

Are web corpora inferior? The Case of Czech and Slovak

Our paper describes an experiment aimed to assessment of lexical coverage in web corpora in comparison with the traditional ones for two closely related Slavic languages from the lexicographers’ perspective. The preliminary results show that web corpora should not be considered ― inferior, but rather ― different

Evaluation of methanol for reduced exhaust emissions in a single-cylinder research engine

The investigation examines the influence of different operating parameters on the formation of oxides of nitrogen, carbon monoxide, unburned fuel and the aldehydes when fueled by methanol and methanol-water mixtures. Also, the effect of adding small quantities of aniline on the burning rate and aldehydes exhaust has been explored

Genetic diversity and population structure of Fusarium fujikuroi causing Bakanae, an emerging disease of rice in India

Bakanae caused by Fusarium fujikuroi (Nirenberg), is emerging as a serious threat for rice (Oryza sativa. L.) cultivation in India. In this study, 63 isolates of Fusarium fujikuroi isolated from symptomatic diseased plants were characterized for their morphology, pathogenicity and molecular variability using universal rice primers (URP). Of the 12 URPs used in the study, 6 primers could produce polymorphic fragments in all the isolates. The URP 17R primer was highly polymorphic (100%), whereas, the URP 1F primer produced 75% polymorphic fragments. A dendrogram obtained from the combined analysis of 6 URP primers categorized the isolates into four clusters, where most of the isolates from Punjab and Haryana were clustered separately. Mating type of the population was identified based on MAT-1 and MAT-2 region universal primers for Gibberella fujikuroi. Among the 63 isolates, 18 (28.57%) were identified as MAT-1 and 45 (71.42%) as MAT-2. The effective population number for mating type was 89% of the total population. Since the distribution frequencies of both mating types were not equal in the Indian population of F. fujikuroi, it could conclude that majority of the multiplication of isolates under field conditions was through asexual reproduction. However, the presence of both mating types in F. fujikuroi indicates that the population is also capable of sexual reproduction. Therefore, it is important to develop cultivars with inbuilt resistance to bakanae disease, taking into consideration the factors such as environmental conditions and variability of the pathogen in the area of intended cultivation

Novel 4,8-benzobisthiazole copolymers and their field-effect transistor and photovoltaic applications

We are grateful to the EPSRC for funding through grants C, EP/L012294/1, EP/L017008/1 and EP/L012200/1 and to the European Research Council for funding from Grant 321305. Supporting data are accessible from 10.15129/9b457e8c-12bc-4a3a-9af3-7f53474f4e5c.A series of copolymers containing the benzo[1,2-d:4,5-d′]bis(thiazole) (BBT) unit has been designed and synthesised with bisthienyl-diketopyrrolopyrrole (DPP), dithienopyrrole (DTP), benzothiadiazole (BT), benzodithiophene (BDT) or 4,4′-dialkoxybithiazole (BTz) comonomers. The resulting polymers possess a conjugation pathway that is orthogonal to the more usual substitution pathway through the 2,6-positions of the BBT unit, facilitating intramolecular non-covalent interactions between strategically placed heteroatoms of neighbouring monomer units. Such interactions enable a control over the degree of planarity through altering their number and strength, in turn allowing for tuning of the band gap. The resulting 4,8-BBT materials gave enhanced mobility in p-type organic field-effect transistors of up to 2.16 × 10-2 cm2 V-1 s-1 for pDPP2ThBBT and good solar cell performance of up to 4.45% power conversion efficiency for pBT2ThBBT.Publisher PDFPeer reviewe

Genome-wide association study reveals novel genomic regions governing agronomic and grain quality traits and superior allelic combinations for Basmati rice improvement

BackgroundBasmati is a speciality segment in the rice genepool characterised by explicit grain quality. For the want of suitable populations, genome-wide association study (GWAS) in Basmati rice has not been attempted.MaterialsTo address this gap, we have performed a GWAS on a panel of 172 elite Basmati multiparent population comprising of potential restorers and maintainers. Phenotypic data was generated for various agronomic and grain quality traits across seven different environments during two consecutive crop seasons. Based on the observed phenotypic variation, three agronomic traits namely, days to fifty per cent flowering, plant height and panicle length, and three grain quality traits namely, kernel length before cooking, length breadth ratio and kernel length after cooking were subjected to GWAS. Genotyped with 80K SNP array, the population was subjected to principal component analysis to stratify the underlying substructure and subjected to the association analysis using Bayesian-information and Linkage-disequilibrium Iteratively Nested Keyway (BLINK) model.ResultsWe identified 32 unique MTAs including 11 robust MTAs for the agronomic traits and 25 unique MTAs including two robust MTAs for the grain quality traits. Six out of 13 robust MTAs were novel. By genome annotation, six candidate genes associated with the robust MTAs were identified. Further analysis of the allelic combinations of the robust MTAs enabled the identification of superior allelic combinations in the population. This information was utilized in selecting 77 elite Basmati rice genotypes from the panel.ConclusionThis is the first ever GWAS study in Basmati rice which could generate valuable information usable for further breeding through marker assisted selection, including enhancing of heterosis

Fine mapping of qBK1.2, a major QTL governing resistance to bakanae disease in rice

Bakanae disease caused by Fusarium fujikuroi is an emerging disease of rice causing losses in all rice-growing regions around the world. A BC2F2 population was developed by backcrossing the recurrent parent Pusa Basmati 1121 (PB1121) with the recombinant inbred line RIL28, which harbors a major quantitative trait locus (QTL) governing resistance to bakanae, qBK1.2. MassARRAY-based single-nucleotide polymorphism (SNP) assays targeting the genomic region of qBK1.2 helped in fine mapping the QTL to a region of 130 kb between the SNP markers rs3164311 and rs3295562 using 24 recombinants. In-silico mining of the fine-mapped region identified 11 putative candidate genes with functions related to defense. The expression analysis identified two significantly differentially expressed genes, that is, LOC_Os01g06750 and LOC_Os01g06870, between the susceptible genotype PB1121 and the resistant genotypes Pusa1342 and R-NIL4. Furthermore, the SNPs identified in LOC_Os01g06750 produced minor substitutions of amino acids with no major effect on the resistance-related functional motifs. However, LOC_Os01g06870 had 21 amino acid substitutions, which led to the creation of the leucine-rich repeat (LRR) domain in the resistant genotype Pusa1342, thereby making it a potential candidate underlying the major bakanae-resistant QTL qBK1.2. The markers used in the fine mapping program are of immense utility in marker-assisted breeding for bakanae resistance in rice