Numerical Methods for the QCD Overlap Operator:III. Nested Iterations

The numerical and computational aspects of chiral fermions in lattice quantum chromodynamics are extremely demanding. In the overlap framework, the computation of the fermion propagator leads to a nested iteration where the matrix vector multiplications in each step of an outer iteration have to be accomplished by an inner iteration; the latter approximates the product of the sign function of the hermitian Wilson fermion matrix with a vector. In this paper we investigate aspects of this nested paradigm. We examine several Krylov subspace methods to be used as an outer iteration for both propagator computations and the Hybrid Monte-Carlo scheme. We establish criteria on the accuracy of the inner iteration which allow to preserve an a priori given precision for the overall computation. It will turn out that the accuracy of the sign function can be relaxed as the outer iteration proceeds. Furthermore, we consider preconditioning strategies, where the preconditioner is built upon an inaccurate approximation to the sign function. Relaxation combined with preconditioning allows for considerable savings in computational efforts up to a factor of 4 as our numerical experiments illustrate. We also discuss the possibility of projecting the squared overlap operator into one chiral sector.Comment: 33 Pages; citations adde

Real-Time Detection of Polymerase Activity Using Supercritical Angle Fluorescence

We investigated the incorporation efficiencies of different fluorescently labelled dNTPs with polymerases by complementary strand synthesis. For this reason single stranded DNA was immobilized on a coverslip and the increase of fluorescence due to the synthesis of the corresponding strand with tagged dNTPs was detected with a supercritical angle fluorescence biosensor in real-time. By comparison of the observed signal intensities it was possible to conclude that the system Cy5-dCTP—Klenow (exonuclease free) fragment gives the best incorporation yield of the investigated enzymes and dNTP

Determination of SU(2) ChPT LECs from 2+1 flavor staggered lattice simulations

By fitting pion masses and decay constants from 2+1 flavor staggered lattice simulations to the predictions of NLO and NNLO SU(2) chiral perturbation theory we determine the low-energy constants l_3 and l_4. The lattice ensembles were generated by the Wuppertal-Budapest collaboration and cover pion masses in the range of 135 to 435 MeV and lattice scales between 0.7 and 2.0 GeV. By choosing a suitable scaling trajectory, we were able to demonstrate that precise and stable results for the LECs can be obtained from continuum ChPT to NLO. The pion masses available in this work also allow us to study the applicability of using ChPT to extrapolate from higher masses to the physical pion mass.Comment: 8 pages, 8 figures, 1 table, talk presented at Xth Quark Confinement and the Hadron Spectrum, Munich, October 201

SU(2) chiral perturbation theory low-energy constants from 2+1 flavor staggered lattice simulations

We extract the next-to-leading-order low-energy constants \bar\ell_3 and \bar\ell_4 of SU(2) chiral perturbation theory, based on precise lattice data for the pion mass and decay constant on ensembles generated by the Wuppertal-Budapest Collaboration for QCD thermodynamics. These ensembles feature 2+1 flavors of two-fold stout-smeared dynamical staggered fermions combined with Symanzik glue, with pion masses varying from 135 to 435 MeV, lattice scales between 0.7 and 2.0 GeV, while m_s is kept fixed at its physical value. Moderate taste splittings and the scale being set through the pion decay constant allow us to restrict ourselves to the taste pseudoscalar state and to use formulas from continuum chiral perturbation theory. Finally, by dropping the data points near 135 MeV from the fits, we can explore the range of pion masses that is needed in SU(2) chiral perturbation theory to reliably extrapolate to the physical point.Comment: 40 pages, 22 figures, 3 tables; v2: expanded discussion, matches published versio

QCD thermodynamics with continuum extrapolated Wilson fermions II

We continue our investigation of 2+1 flavor QCD thermodynamics using dynamical Wilson fermions in the fixed scale approach. Two additional pion masses, approximately 440 MeV and 285 MeV, are added to our previous work at 545 MeV. The simulations were performed at 3 or 4 lattice spacings at each pion mass. The renormalized chiral condensate, strange quark number susceptibility and Polyakov loop is obtained as a function of the temperature and we observe a decrease in the light chiral pseudo-critical temperature as the pion mass is lowered while the pseudo-critical temperature associated with the strange quark number susceptibility or the Polyakov loop is only mildly sensitive to the pion mass. These findings are in agreement with previous continuum results obtained in the staggered formulation.Comment: 19 pages, 13 figures, published versio

Scaling study for 2 HEX smeared fermions: hadron and quark masses

The goal of this study is to investigate the scaling behaviour of our 2 HEX action. For this purpose, we compute the $N_f=3$ spectrum and compare the results to our 6 EXP action. We find a large scaling window up to $\sim 0.15\,\mathrm{fm}$ along with small scaling corrections at the 2%-level and full compatibility with our previous study. As a second important observable to be tested for scaling, we chose the non-perturbatively renormalized quenched strange quark mass. Here we find a fairly flat scaling with a broad scaling range up to $\simeq 0.15\,\mathrm{fm}$ and perfect agreement with the literature.Comment: PoS for the XXVIII International Symposium on Lattice Field Theory, Lattice2010, 7 pages, 4 figure

Leptonic decay-constant ratio fK/fπf_K/f_\pi from lattice QCD using 2+1 clover-improved fermion flavors with 2-HEX smearing

We present a calculation of the leptonic decay-constant ratio $f_K/f_\pi$ in 2+1 flavor QCD. Our data set includes five lattice spacings and pion masses reaching down below the physical one. Special emphasis is placed on a careful study of all systematic uncertainties, especially the continuum extrapolation. Our result is perfectly compatible with the first-row unitarity constraint of the Standard Model.Comment: 19 pages, 6 figures, 3 tables; v2: added supplementary analysis, version published in Phys. Rev.

Systematic errors in partially-quenched QCD plus QED lattice simulations

At the precision reached in current lattice QCD calculations, electromagnetic effects are becoming numerically relevant. Here, electromagnetic effects are included by superimposing $\mathrm{U}(1)$ degrees of freedom on $N_f = 2+1$ QCD configurations from the Budapest-Marseille-Wuppertal Collaboration. We present preliminary results for the electromagnetic corrections to light pseudoscalars mesons masses and discuss some of the associated systematic errors.Comment: 7 pages, 2 figures, The XXIX International Symposium on Lattice Field Theory, July 10-16, 2011, Squaw Valley, Lake Tahoe, California, US

High-precision scale setting in lattice QCD

Scale setting is of central importance in lattice QCD. It is required to predict dimensional quantities in physical units. Moreover, it determines the relative lattice spacings of computations performed at different values of the bare coupling, and this is needed for extrapolating results into the continuum. Thus, we calculate a new quantity, $w_0$, for setting the scale in lattice QCD, which is based on the Wilson flow like the scale $t_0$ (M. Luscher, JHEP 1008 (2010) 071). It is cheap and straightforward to implement and compute. In particular, it does not involve the delicate fitting of correlation functions at asymptotic times. It typically can be determined on the few per-mil level. We compute its continuum extrapolated value in 2+1-flavor QCD for physical and non-physical pion and kaon masses, to allow for mass-independent scale setting even away from the physical mass point. We demonstrate its robustness by computing it with two very different actions (one of them with staggered, the other with Wilson fermions) and by showing that the results agree for physical quark masses in the continuum limit.Comment: 15 pages, 7 figures, 2 tables; Version published in JHE