Assessing the Efficacy of Chlorophacinone for Mountain Beaver (\u3ci\u3eAplodontia rufa\u3c/i\u3e) Control

The mountain beaver is a fossorial rodent species endemic to the Pacific Northwest and portions of California. This herbivore is managed as a pest species because of the impact it has on newly planted Douglas-fir seedlings. Currently, managers are limited to trapping for population control; however, in Washington trapping has been further curtailed by anti-trapping legislation. Presently there are no registered underground toxicants for mountain beaver control. We have documented the efficacy of chlorophacinone, presented in daily doses, as a possible alternative for mountain beaver control. Daily baiting would be unreasonable and costly alternative for timber managers, so we conducted a series of tests to determine if a single or double baiting was efficacious. In addition, we tested the caching behavior of the mountain beaver when offered bags of oats. This behavior may help reduce impacts to non-target species as well reduce environmental exposure and degradation. Mountain beaver readily cached bags of chlorophacinone within their artificial burrows, and efficacy of a one-lime and two-time dose was 100%. We determined that even with the highest chlorophacinone residuals (0.354 ppm) that the risk quotient for mink and red-tailed hawk was exactly at the level of concern that EPA recognizes for endangered and threatened species

Assessing the Efficacy of Chlorophacinone for Mountain Beaver (\u3ci\u3eAplodontia rufa\u3c/i\u3e) Control

The mountain beaver is a fossorial rodent species endemic to the Pacific Northwest and portions of California. This herbivore is managed as a pest species because of the impact it has on newly planted Douglas-fir seedlings. Currently, managers are limited to trapping for population control; however, in Washington trapping has been further curtailed by anti-trapping legislation. Presently there are no registered underground toxicants for mountain beaver control. We have documented the efficacy of chlorophacinone, presented in daily doses, as a possible alternative for mountain beaver control. Daily baiting would be unreasonable and costly alternative for timber managers, so we conducted a series of tests to determine if a single or double baiting was efficacious. In addition, we tested the caching behavior of the mountain beaver when offered bags of oats. This behavior may help reduce impacts to non-target species as well reduce environmental exposure and degradation. Mountain beaver readily cached bags of chlorophacinone within their artificial burrows, and efficacy of a one-lime and two-time dose was 100%. We determined that even with the highest chlorophacinone residuals (0.354 ppm) that the risk quotient for mink and red-tailed hawk was exactly at the level of concern that EPA recognizes for endangered and threatened species

Assessing the Efficacy of Chlorophacinone for Mountain Beaver (\u3ci\u3eAplodontia rufa\u3c/i\u3e) Control

The mountain beaver is a fossorial rodent species endemic to the Pacific Northwest and portions of California. This herbivore is managed as a pest species because of the impact it has on newly planted Douglas-fir seedlings. Currently, managers are limited to trapping for population control; however, in Washington trapping has been further curtailed by anti-trapping legislation. Presently there are no registered underground toxicants for mountain beaver control. We have documented the efficacy of chlorophacinone, presented in daily doses, as a possible alternative for mountain beaver control. Daily baiting would be unreasonable and costly alternative for timber managers, so we conducted a series of tests to determine if a single or double baiting was efficacious. In addition, we tested the caching behavior of the mountain beaver when offered bags of oats. This behavior may help reduce impacts to non-target species as well reduce environmental exposure and degradation. Mountain beaver readily cached bags of chlorophacinone within their artificial burrows, and efficacy of a one-lime and two-time dose was 100%. We determined that even with the highest chlorophacinone residuals (0.354 ppm) that the risk quotient for mink and red-tailed hawk was exactly at the level of concern that EPA recognizes for endangered and threatened species

Probabilistic Model to Optimize Formulation and Baiting Strategies for the Pesticide CPTH (3-chloro-4-methylaniline hydrochloride)

ABSTRACT: A probabilistic model was validated for estimating avian mortality associated with the application of the avicide CPTH (3-chloro-4-methylaniline hydrochloride) to minimize sprouting rice damage in the southern United States. CPTH exposures for individual birds were predicted by random sampling from species-specific non-parametric distributions of bait seed consumption and CPTH residues detected on individual bait seeds. Mortality was predicted from the species-specific exposure versus mortality relationship. Individual variations in this response were captured in the model by Monte Carlo sampling from species-specific distributions of slopes and median toxicity values (LD 50 ) for each bird. The model was used to evaluate the effects of formulation, bait preparation and application procedures on target and non-target mortalities. The results of these analyses indicate that: 1) decreasing the concentration of CPTH on the treated bait seeds from 400 to 300 µg CPTH/seed will improve bait performance by decreasing non-target mortalities, 2) the current dilution ratio of 1 treated seed to 25 diluent seeds is optimal and 3) preparing a bait seed product in which CPTH is homogeneously distributed throughout the bait seed mixture will significantly increase bait performance by increasing red-winged blackbird (target) mortality and decreasing mortality for savannah sparrows and meadowlarks (non-targets)

Frequent Cross-Species Transmission of Parvoviruses among Diverse Carnivore Hosts

Although parvoviruses are commonly described in domestic carnivores, little is known about their biodiversity in nondomestic species. A phylogenetic analysis of VP2 gene sequences from puma, coyote, gray wolf, bobcat, raccoon, and striped skunk revealed two major groups related to either feline panleukopenia virus (“FPV-like”) or canine parvovirus (“CPV-like”). Crossspecies transmission was commonplace, with multiple introductions into each host species but, with the exception of raccoons, relatively little evidence for onward transmission in nondomestic species

Requirement of the CXXC Motif of Novel Francisella Infectivity Potentiator Protein B FipB, and FipA in Virulence of F. tularensis subsp. tularensis

The lipoprotein encoded by the Francisella tularensis subsp. tularensis locus FTT1103 is essential for virulence; an FTT1103 deletion mutant is defective in uptake and intracellular survival, and mice survive high dose challenges of greater than 108 bacteria. This protein has two conserved domains; one is found in a class of virulence proteins called macrophage infectivity potentiator (Mip) proteins, and the other in oxidoreductase Disulfide Bond formation protein A (DsbA)-related proteins. We have designated the protein encoded by FTT1103 as FipB for Francisella infectivity potentiator protein B. The locus FTT1102 (fipA), which is upstream of fipB, also has similarity to same conserved Mip domain. Deletion and site-specific mutants of fipA and fipB were constructed in the Schu S4 strain, and characterized with respect to intracellular replication and in vivo virulence. A nonpolar fipA mutant demonstrated reduced survival in host cells, but was only slightly attenuated in vivo. Although FipB protein was present in a fipA mutant, the abundance of the three isoforms of FipB was altered, suggesting that FipA has a role in post-translational modification of FipB. Similar to many DsbA homologues, FipB contains a cysteine-any amino acid-any amino acid-cysteine (CXXC) motif. This motif was found to be important for FipB's role in virulence; a deletion mutant complemented with a gene encoding a FipB protein in which the first cysteine was changed to an alanine residue (AXXC) failed to restore intracellular survival or in vivo virulence. Complementation with a gene that encoded a CXXA containing FipB protein was significantly defective in intracellular growth; however, only slightly attenuated in vivo

Population-Based Resequencing of Experimentally Evolved Populations Reveals the Genetic Basis of Body Size Variation in Drosophila melanogaster

Body size is a classic quantitative trait with evolutionarily significant variation within many species. Locating the alleles responsible for this variation would help understand the maintenance of variation in body size in particular, as well as quantitative traits in general. However, successful genome-wide association of genotype and phenotype may require very large sample sizes if alleles have low population frequencies or modest effects. As a complementary approach, we propose that population-based resequencing of experimentally evolved populations allows for considerable power to map functional variation. Here, we use this technique to investigate the genetic basis of natural variation in body size in Drosophila melanogaster. Significant differentiation of hundreds of loci in replicate selection populations supports the hypothesis that the genetic basis of body size variation is very polygenic in D. melanogaster. Significantly differentiated variants are limited to single genes at some loci, allowing precise hypotheses to be formed regarding causal polymorphisms, while other significant regions are large and contain many genes. By using significantly associated polymorphisms as a priori candidates in follow-up studies, these data are expected to provide considerable power to determine the genetic basis of natural variation in body size

Eaten out of house and home:impacts of grazing on ground-dwelling reptiles in Australian grasslands and grassy woodlands

Large mammalian grazers can alter the biotic and abiotic features of their environment through their impacts on vegetation. Grazing at moderate intensity has been recommended for biodiversity conservation. Few studies, however, have empirically tested the benefits of moderate grazing intensity in systems dominated by native grazers. Here we investigated the relationship between (1) density of native eastern grey kangaroos, Macropus giganteus, and grass structure, and (2) grass structure and reptiles (i.e. abundance, richness, diversity and occurrence) across 18 grassland and grassy Eucalyptus woodland properties in south-eastern Australia. There was a strong negative relationship between kangaroo density and grass structure after controlling for tree canopy cover. We therefore used grass structure as a surrogate for grazing intensity. Changes in grazing intensity (i.e. grass structure) significantly affected reptile abundance, reptile species richness, reptile species diversity, and the occurrence of several ground-dwelling reptiles. Reptile abundance, species richness and diversity were highest where grazing intensity was low. Importantly, no species of reptile was more likely to occur at high grazing intensities. Legless lizards (Delma impar, D. inornata) were more likely to be detected in areas subject to moderate grazing intensity, whereas one species (Hemiergis talbingoensis) was less likely to be detected in areas subject to intense grazing and three species (Menetia greyii, Morethia boulengeri, and Lampropholis delicata) did not appear to be affected by grazing intensity. Our data indicate that to maximize reptile abundance, species richness, species diversity, and occurrence of several individual species of reptile, managers will need to subject different areas of the landscape to moderate and low grazing intensities and limit the occurrence and extent of high grazing

Caenorhabditis elegans Semi-Automated Liquid Screen Reveals a Specialized Role for the Chemotaxis Gene cheB2 in Pseudomonas aeruginosa Virulence

Pseudomonas aeruginosa is an opportunistic human pathogen that causes infections in a variety of animal and plant hosts. Caenorhabditis elegans is a simple model with which one can identify bacterial virulence genes. Previous studies with C. elegans have shown that depending on the growth medium, P. aeruginosa provokes different pathologies: slow or fast killing, lethal paralysis and red death. In this study, we developed a high-throughput semi-automated liquid-based assay such that an entire genome can readily be scanned for virulence genes in a short time period. We screened a 2,200-member STM mutant library generated in a cystic fibrosis airway P. aeruginosa isolate, TBCF10839. Twelve mutants were isolated each showing at least 70% attenuation in C. elegans killing. The selected mutants had insertions in regulatory genes, such as a histidine kinase sensor of two-component systems and a member of the AraC family, or in genes involved in adherence or chemotaxis. One mutant had an insertion in a cheB gene homologue, encoding a methylesterase involved in chemotaxis (CheB2). The cheB2 mutant was tested in a murine lung infection model and found to have a highly attenuated virulence. The cheB2 gene is part of the chemotactic gene cluster II, which was shown to be required for an optimal mobility in vitro. In P. aeruginosa, the main player in chemotaxis and mobility is the chemotactic gene cluster I, including cheB1. We show that, in contrast to the cheB2 mutant, a cheB1 mutant is not attenuated for virulence in C. elegans whereas in vitro motility and chemotaxis are severely impaired. We conclude that the virulence defect of the cheB2 mutant is not linked with a global motility defect but that instead the cheB2 gene is involved in a specific chemotactic response, which takes place during infection and is required for P. aeruginosa pathogenicity

Unearthing the Infrastructure: Humans and Sensors in Field-Based Scientific Research

Distributed sensing systems for studying scientific phenomena are critical applications of information technologies. By embedding computational intelligence in the environment of study, sensing systems allow researchers to study phenomena at spatial and temporal scales that were previously impossible to achieve. We present an ethnographic study of field research practices among researchers in the Center for Embedded Networked Sensing (CENS), a National Science Foundation Science & Technology Center devoted to developing wireless sensing systems for scientific and social applications. Using the concepts of boundary objects and trading zones, we trace the processes of collaborative research around sensor technology development and adoption within CENS. Over the 10-year lifespan of CENS, sensor technologies, sensor data, field research methods, and statistical expertise each emerged as boundary objects that were understood differently by the science and technology partners. We illustrate how sensing technologies were incompatible with field-based environmental research until researchers “unearthed” their infrastructures, explicitly reintroducing human skill and expertise into the data collection process and developing new collaborative languages that emphasized building dynamic sensing systems that addressed human needs. In collaborating around a dynamic sensing model, the sensing systems became embedded not in the environment of study, but in the practices of the scientists. Status and citation: This is the revised and accepted version, prior to publisher’s copy editing. Please quote the final version: Mayernik, Matthew S., Wallis, Jillian C., & Borgman, Christine L. (In press). Unearthing the infrastructure: Humans and sensors in field-based scientific research. Journal of Computer Supported Cooperative Work. doi: 10.1007/s10606-012-9178-