Genetic parameters and genomic prediction of resistance to koi herpesvirus disease using a low-density SNP panel on two Amur mirror carp populations

Koi herpesvirus disease (KHVD), caused by Cyprinid herpesvirus-3 (CyHV-3), is one of the most serious threats to carp farming. In the present study, we investigated the efficiency of a low-density (LD) SNP panel for estimating genetic parameters and breeding values to KHVD resistance in the Amur mirror carp (AMC). Two populations (Pop 1 and Pop 2) of AMC generated from unrelated parents were created using a partial factorial design. One-year old fish (Pop 1 = 1500 individuals.; Pop 2 = 1200 individuals) were challenged with CyHV-3 and phe-notyped to KHVD resistance. 218 SNPs originating from a medium genotyping platform previously applied to Pop 1 (15615 SNPs; denoted as MD panel) with the highest association to KHVD resistance were used as a LD panel to genotype individuals of Pop 2. Genetic parameters and estimated pedigree-based BLUP (EBV) and genomic-based GBLUP (GEBV_MD and GEBV_LD) breeding values were calculated and obtained for Pop 1 using either pedigree, MD or LD panel and for Pop 2 using either pedigree or the LD panel. The heritability estimates of KHVD resistance were very high for both populations ranging from 0.42 to 0.96. Selection for KHVD resistance in Pop 2 using the LD panel would have led to a relative increase of similar to 7% in prediction accuracy compared to the pedigree-based selection. Pearson correlation coefficients between pedigree-based and genomic-based estimated breeding values (EBV vs. GEBV_MD; EBV vs. GEBV_LD; GEBV_MD vs. GEBV_LD) showed a strong association for both populations (0.79 - 0.91). In addition, the concordance rate of individuals selected by pedigree-based (EBV) and genomic-based breeding values (GEBV_MD and GEBV_LD) within selection pressures of 5%, 10% and 20% were not statistically different in most cases. In conclusion, the low-density SNP panel could be useful for a selection program focused on the genetic improvement of KHVD resistance

Type I interferon responses of common carp strains with different levels of resistance to koi herpesvirus disease during infection with CyHV-3 or SVCV

Carp from breeding strains with different genetic background present diverse levels of resistance to viral pathogens. Carp strains of Asian origin, currently being treated as Cyprinus rubrofuscus L., especially Amur wild carp (AS), were proven to be more resistant to koi herpesvirus disease (KHVD; caused by cyprinid herpesvirus 3, CyHV-3) than strains originating from Europe and belonging to Cyprinus carpio L., like the Prerov scale carp (PS) or koi carp from a breed in the Czech Republic. We hypothesised that it can be associated with a higher magnitude of type I interferon (IFN) response as a first line of innate defence mechanisms against viral infections. To evaluate this hypothesis, four strains of common carp (AS, Rop, PS and koi) were challenged using two viral infection models: Rhabdovirus SVCV (spring viremia of carp virus) and alloherpesvirus CyHV-3. The infection with SVCV induced a low mortality rate and the most resistant was the Rop strain (no mortalities), whereas the PS strain was the most susceptible (survival rate of 78%). During CyHV-3 infection, Rop and AS strains performed better (survival rates of 78% and 53%, respectively) than PS and koi strains (survival rates of 35% and 10%, respectively). The evaluation of virus loads and virus replication showed significant differences between the carp strains, which correlated with the mortality rate. The evaluation of type I IFN responses showed that there were fundamental differences between the virus infection models. While responses to the SVCV were high, the CyHV-3 generally induced low responses. Furthermore, the results demonstrated that the magnitude of type I IFN responses did not correlate with a higher resistance in infected carp. In the case of a CyHV-3 infection, reduced type I IFN responses could be related to the potential ability of the virus to interfere with cellular sensing of foreign nucleic acids. Taken together, the results broaden our understanding of how common carp from different genetic lines interact with various viral pathogens

Experimental infections of different carp strains with the carp edema virus (CEV) give insights into the infection biology of the virus and indicate possible solutions to problems caused by koi sleepy disease (KSD) in carp aquaculture

Outbreaks of koi sleepy disease (KSD) caused by carp edema virus (CEV) may seriously affect populations of farmed common carp, one of the most important fish species for global food production. The present study shows further evidence for the involvement of CEV in outbreaks of KSD among carp and koi populations: in a series of infection experiments, CEV from two different genogroups could be transmitted to several strains of naïve common carp via cohabitation with fish infected with CEV. In recipient fish, clinical signs of KSD were induced. The virus load and viral gene expression results confirm gills as the target organ for CEV replication. Gill explants also allowed for a limited virus replication in vitro. The in vivo infection experiments revealed differences in the virulence of the two CEV genogroups which were associated with infections in koi or in common carp, with higher virulence towards the same fish variety as the donor fish. When the susceptibility of different carp strains to a CEV infection and the development of KSD were experimentally investigated, Amur wild carp showed to be relatively more resistant to the infection and did not develop clinical signs for KSD. However, the resistance could not be related to a higher magnitude of type I IFN responses of affected tissues. Despite not having a mechanistic explanation for the resistance of Amur wild carp to KSD, we recommend using this carp strain in breeding programs to limit potential losses caused by CEV in aquaculture

Spermatozoal competition in common carp (Cyprinus carpio): what is the primary determinant of competition success?

International audienceThe percentage of sperm motility (92-100%), spermatozoan velocity (112-163 microm.s(-1)) and control hatching rates (83-96%) were evaluated for each of six gold and five green male common carp (Cyprinus carpio). In all 30 possible paired combinations of sperm-competition tests, hatching rates of 90-97% were achieved. The mean percentage of offspring sired was strongly influenced by the male used (P < 0.001, R2 = 0.91). The best male sired an average of 88% of the offspring in its competition tests, and the worst male sired only 5%. Spermatozoan-quality parameters could explain only part of the variation in male competitive ability. The male effects alone explained 91.4% of the observed variance, consisting of 17.1% explained by spermatozoan motility and 32.5% by control hatching rates in single fertilizations. Undetermined male effects explained 41.8%. The velocity of spermatozoa had no effect on the outcome of sperm competition. Neither was there any link between spermatozoan velocity and hatching rate in a control hatching test, whereas there was an effect of motility on hatching rate in this same test

Estimation of genetic parametres of body reserves in one year common carp (Cyprinus carpio L.)

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Chemical composition of edible parts of three-year-old experimental scaly crossbreds of common carp (Cyprinus carpio, Linnaeus 1758)

The aim of the study was to compare the quality of edible parts of three experimental groups of carp, i.e. pure line of Přerov scaly carp (PS), hybrid line of Přerov scaly carp and northern mirror carp (PS×M72), the hybrid line of Přerov scaly carp and Ropsha scaly carp (PS×ROP), with the quality of edible parts of control hybrids of Hungarian and northern mirror carp (M2×M72) in harvest size (K3). The chemical composition of edible parts of the experimental groups of carp (PS, PS×M72, PS×ROP) was comparable with that of the control group (M2×M72). The highest fat content (89.8±1.94 g kg−1) was found in the fillet of PS×ROP hybrids (P<0.05). Of EAA sum (48.54±0.31%) in the fillet of PS×ROP hybrids, Lys (9.17±0.47%) and Leu (8.28±0.49%) were the most abundant. In comparison with organs, their fillet contained more His (4.38±0.34%, P<0.01), the ovaries more Val (11.65±0.37%, P<0.01) and testes more Ile (8.13±0.53%, P<0.01), Lys (11.70±0.63%, P<0.01) and Arg (10.44±0.27%, P<0.01). In the hepatopancreas of PS×ROP hybrids Phe (4.86±0.25%, P<0.05) was the most abundant. The fillet of PS×ROP hybrids contained SFA sum (21.37±0.46%), MUFA sum (64.20±0.57%) and PUFA sum (14.56±0.34%) in the ratio of 1:3:0.7. Of the fatty acids PUFA n-3 sum (2.39±0.09%), the most abundant in the fillet of PS×ROP hybrids was the essential linolenic acid C18:3n-3 (0.86±0.09%) and the eicosapentaenic acid C20:5n-3 (0.69±0.09%) and the docosahexaenic acid C22:6n-3 (0.35±0.02%). The PUFA n-6/n-3 ratio in the fillet of PS×ROP hybrids was 3.25±0.18. The quality of edible parts of PS×ROP hybrids was comparable with that of commercially farmed M2×M72 mirror carp. From the point of view of chemical evaluation of the quality of edible parts, PS×ROP hybrids can be recommended for commercial farming in aquacultures

EFFECT OF CULTURE CONDITIONS ON REPRODUCTIVE TRAITS OF BROWN TROUT SALMO TRUTTA L.

Progeny from artificial propagation of wild brown trout (Salmo trutta L.) of the Blanice river, Czech Republic, were farmed to maturity and spawned at ages three, four and five during 2002-2004. Reproductive parameters and biological quality of eggs in this farmed population were compared to those of the original wild population. ANCOVA showed no differences between wild and farmed fish in weight of eggs per female, total fecundity, or relative fecundity in any year. Significantly higher egg diameter (4.57 mm, P = 0.001) and weight (69.3 mg, P = 0.0375) were found in the wild population in 2002 and conversely in 2004, the mean egg weight was higher in the farmed population (94.7 mg, P = 0.0021). Differences in egg diameter in this year (4.64 ± 0.06 and 4.82 ± 0.06 in wild and farmed trout, respectively) were close to the level of significance (P = 0.079). Mutual correlations between length or weight and studied reproductive traits were similar in both populations. Fertilization rate, duration of incubation period, egg losses during incubation and mortality of starving hatched fry were monitored in embryos and larvae of farmed population only (FxF), crosses between farmed females and wild males (FxW) and wild population only (WxW). Altogether 6.3%, 5.8% and 5.4% of eggs died during incubation period in FxF, FxW and WxW, respectively. There were also no significant differences in duration of incubation period and mortality of starving fry. It can be concluded that farming conditions did not significantly affect the reproductive parameters and quality of eggs in the first generation of farmed broodstock

Heritability estimates for processing and quality traits in common carp (Cyprinus carpio L.) using a molecular pedigree

International audienceHeritability estimates with a microsatellite parentage assignment based pedigree are of special interest in common carp cultured under traditional pond conditions. This method reduces common environment effects as all families can be grown immediately after hatching mixed in the same pond. We applied this method to study genetics of growth and processing traits in common carp at market size (1.5 kg and more). The experimental progeny was established by crossing 147 two-year old males and 8 females (six to eight-year old) of Hungarian synthetic mirror carp population. The fish grew up through three vegetation seasons and at the end a sample of 331 fish was examined for biometrical traits (standard length, body weight, relative head length, relative body height, relative body width), percent fat and processing traits (% processed body, % fillets with skin, % fillets without skin). It was shown that sex had a significant effect on most traits: females were larger and fatter than males, and they had both higher percent processed body and percent fillet with skin. Standard length, body weight, percent fat and relative head length had a high heritability (> 0.5), while relative body height, relative body width, percent processed body and fillet yields had a medium heritability (0.2–0.5). We found relatively high positive genetic correlations between body size (standard length and body weight) and percent fat (0.71 and 0.59, respectively), favourable genetic correlations between body size and percent processed body (0.69 for standard length and 0.74 for body weight) and between body size and fillet yields (0.50–0.77). Genetic correlations between body size and body shape (relative head length, relative body height and relative body width) were weak to moderate, thus selection for better growth should have little impact towards more rotund shape. Relative head length had strong negative correlation (− 0.7 to − 0.9) with percent fat, percent processed body and percent fillet yields. This means that indirect selection for reduced relative head length should be effective in improving of fillet yield