Magneto-elastic coupling and competing entropy changes in substituted CoMnSi metamagnets

We use neutron diffraction, magnetometry and low temperature heat capacity to probe giant magneto-elastic coupling in CoMnSi-based antiferromagnets and to establish the origin of the entropy change that occurs at the metamagnetic transition in such compounds. We find a large difference between the electronic density of states of the antiferromagnetic and high magnetisation states. The magnetic field-induced entropy change is composed of this contribution and a significant counteracting lattice component, deduced from the presence of negative magnetostriction. In calculating the electronic entropy change, we note the importance of using an accurate model of the electronic density of states, which here varies rapidly close to the Fermi energy.Comment: 11 pages, 9 figures. Figures 4 and 6 were updated in v2 of this preprint. In v3, figures 1 and 2 have been updated, while Table II and the abstract have been extended. In v4, Table I has updated with relevant neutron diffraction dat

Simulations of Weighted Tree Automata

Simulations of weighted tree automata (wta) are considered. It is shown how such simulations can be decomposed into simpler functional and dual functional simulations also called forward and backward simulations. In addition, it is shown in several cases (fields, commutative rings, Noetherian semirings, semiring of natural numbers) that all equivalent wta M and N can be joined by a finite chain of simulations. More precisely, in all mentioned cases there exists a single wta that simulates both M and N. Those results immediately yield decidability of equivalence provided that the semiring is finitely (and effectively) presented.Comment: 17 pages, 2 figure

PyNAST: a flexible tool for aligning sequences to a template alignment

Motivation: The Nearest Alignment Space Termination (NAST) tool is commonly used in sequence-based microbial ecology community analysis, but due to the limited portability of the original implementation, it has not been as widely adopted as possible. Python Nearest Alignment Space Termination (PyNAST) is a complete reimplementation of NAST, which includes three convenient interfaces: a Mac OS X GUI, a command-line interface and a simple application programming interface (API)

A modified protocol for the detection of three different mRNAs with a new-generation in situ hybridization chain reaction on frozen sections

A new multiple fluorescence in situ hybridization method based on hybridization chain reaction was recently reported, enabling simultaneous mapping of multiple target mRNAs within intact zebrafish and mouse embryos. With this approach, DNA probes complementary to target mRNAs trigger chain reactions in which metastable fluorophore-labeled DNA hairpins self-assemble into fluorescent amplification polymers. The formation of the specific polymers enhances greatly the sensitivity of multiple fluorescence in situ hybridization. In this study we describe the optimal parameters (hybridization chain reaction time and temperature, hairpin and salt concentration) for multiple fluorescence in situ hybridization via amplification of hybridization chain reaction for frozen tissue sections. The combined use of fluorescence in situ hybridization and immunofluorescence, together with other control experiments (sense probe, neutralization and competition, RNase treatment, and anti-sense probe without initiator) confirmed the high specificity of the fluorescence in situ hybridization used in this study. Two sets of three different mRNAs for oxytocin, vasopressin and somatostatin or oxytocin, vasopressin and thyrotropin releasing hormone were successfully visualized via this new method. We believe that this modified protocol for multiple fluorescence in situ hybridization via hybridization chain reaction would allow researchers to visualize multiple target nucleic acids in the future

Estimating the Permanent Loss of Groundwater Storage in the Southern San Joaquin Valley, California

In the San Joaquin Valley, California, recent droughts starting in 2007 have increased the pumping of groundwater, leading to widespread subsidence. In the southern portion of the San Joaquin Valley, vertical subsidence as high as 85 cm has been observed between June 2007 and December 2010 using Interferometric Synthetic Aperture Radar (InSAR). This study seeks to map regions where inelastic (not recoverable) deformation occurred during the study period, resulting in permanent compaction and loss of groundwater storage. We estimated the amount of permanent compaction by incorporating multiple data sets: the total deformation derived from InSAR, estimated skeletal-specific storage and hydraulic parameters, geologic information, and measured water levels during our study period. We used two approaches, one that we consider to provide an estimate of the lowest possible amount of inelastic deformation, and one that provides a more reasonable estimate. These two approaches resulted in a spatial distribution of values for the percentage of the total deformation that was inelastic, with the former estimating a spatially averaged value of 54%, and the latter a spatially averaged value of 98%. The former corresponds to the permanent loss of 4.14*108 m3 of groundwater storage, or roughly 5% of the volume of groundwater used over the study time period; the latter corresponds to the loss of 7.48*108 m3 of groundwater storage, or roughly 9% of the volume of groundwater used. This study demonstrates that a data-driven approach can be used effectively to estimate the permanent loss of groundwater storage

Shell Structure and Strengthening of Superconducting Pair Correlation in Nanoclusters

The existence of shell structure and the accompanying high degeneracy of electronic levels leads to the possibility of strong superconducting pairing in metallic nanoclusters with N~100-1000 delocalized electrons. The most favorable cases correspond to (a) "magic" clusters with strongly degenerate highest occupied and lowest unoccupied shells and a relatively small energy spacing between them as well as to (b) clusters with slightly incomplete shells and small Jahn-Teller splitting. It is shown that realistic sets of parameters lead to very high values of Tc as well as to a strong alteration of the energy spectrum. The impact of fluctuations is analyzed. Spectroscopic experiments aimed at detecting the presence of pair correlations are proposed. The pairing should also manifest itself via odd-even effects in cluster spectra, similar to the case of nuclei

Segregation of granular binary mixtures by a ratchet mechanism

We report on a segregation scheme for granular binary mixtures, where the segregation is performed by a ratchet mechanism realized by a vertically shaken asymmetric sawtooth-shaped base in a quasi-two-dimensional box. We have studied this system by computer simulations and found that most binary mixtures can be segregated using an appropriately chosen ratchet, even when the particles in the two components have the same size, and differ only in their normal restitution coefficient or friction coefficient. These results suggest that the components of otherwise non-segregating granular mixtures may be separated using our method.Comment: revtex, 4 pages, 4 figures, submitte

Single atom quantum walk with 1D optical superlattices

A proposal for the implementation of quantum walks using cold atom technology is presented. It consists of one atom trapped in time varying optical superlattices. The required elements are presented in detail including the preparation procedure, the manipulation required for the quantum walk evolution and the final measurement. These procedures can be, in principle, implemented with present technology.Comment: 6 pages, 7 figure