Integrating genomic information and productivity and climate-adaptability traits into a regional white spruce breeding program

Tree improvement programs often focus on improving productivity-related traits; however, under present climate change scenarios, climate change-related (adaptive) traits should also be incorporated into such programs. Therefore, quantifying the genetic variation and correlations among productivity and adaptability traits, and the importance of genotype by environment interactions, including defense compounds involved in biotic and abiotic resistance, is essential for selecting parents for the production of resilient and sustainable forests. Here, we estimated quantitative genetic parameters for 15 growth, wood quality, drought resilience, and monoterpene traits for Picea glauca (Moench) Voss (white spruce). We sampled 1,540 trees from three open-pollinated progeny trials, genotyped with 467,224 SNP markers using genotyping-by-sequencing (GBS). We used the pedigree and SNP information to calculate, respectively, the average numerator and genomic relationship matrices, and univariate and multivariate individual-tree models to obtain estimates of (co)variance components. With few site-specific exceptions, all traits examined were under genetic control. Overall, higher heritability estimates were derived from the genomic- than their counterpart pedigree-based relationship matrix. Selection for height, generally, improved diameter and water use efficiency, but decreased wood density, microfibril angle, and drought resistance. Genome-based correlations between traits reaffirmed the pedigree-based correlations for most trait pairs. High and positive genetic correlations between sites were observed (average 0.68), except for those pairs involving the highest elevation, warmer, and moister site, specifically for growth and microfibril angle. These results illustrate the advantage of using genomic information jointly with productivity and adaptability traits, and defense compounds to enhance tree breeding selection for changing climate.Instituto de Recursos BiológicosFil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Recursos Biológicos; ArgentinaFil: Cappa, Eduardo Pablo. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Klutsch, Jenifer G. University of Alberta; Department of Renewable Resources; CanadaFil: Sebastian-Azcona, Jaime. University of Alberta; Department of Renewable Resources; CanadaFil: Ratchiffe, Blaise. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; CanadáFil: Xiaojing, Wei. University of Alberta; Department of Renewable Resources; CanadaFil: Da Ros, Letitia. University of British Columbia. Faculty of Forestry. Department of Wood Science; CanadáFil: Yang, Liu. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; CanadáFil: Chen, Charles. Oklahoma State University. Department of Biochemistry and Molecular Biology; Estados UnidosFil: Benowicz, Andy. Alberta Agriculture and Forestry. Forest Stewardship and Trade Branch; CanadáFil: Sadoway, Shane. Blue Ridge Lumber Inc.; CanadáFil: Mansfield, Shawn D. University of British Columbia. Faculty of Forestry. Department of Wood Science; CanadáFil: Erbilgin, Nadir. University of Alberta; Department of Renewable Resources; CanadaFil: Thomas, Barb R. University of Alberta; Department of Renewable Resources; CanadaFil: El-Kassaby, Yousry A. University of British Columbia. Faculty of Forestry. Department of Forest and Conservation Sciences; Canad

Decoupling of height growth and drought or pest resistance tradeoffs is revealed through multiple common-garden experiments of lodgepole pine

14 páginas.- 4 figuras.- 1 tabla.- 101 referencias.- Supplementary material is available online at Evolution (https://academic.oup.com/evolut/qpad004) . A correction has been published: Evolution, Volume 77, Issue 4, 1 April 2023, Page 1174, https://doi.org/10.1093/evolut/qpad030 Issue Section: Correction This is a correction to: Yang Liu, Nadir Erbilgin, Eduardo Pablo Cappa, Charles Chen, Blaise Ratcliffe, Xiaojing Wei, Jennifer G Klutsch, Aziz Ullah, Jaime Sebastian Azcona, Barb R Thomas, Yousry A El-Kassaby, Decoupling of height growth and drought or pest resistance tradeoffs is revealed through multiple common-garden experiments of lodgepole pine, Evolution, 2023; qpad004, https://doi.org/10.1093/evolut/qpad004 In the originally published version of this manuscript, the images for Figures 3 and 4 were erroneously transposed. The images are now in their correct position to align with their respective legends. The Funding section was erroneously removed, and its details situated at the end of the Acknowledgements section. Funding details are now situated within the replaced Funding section. The publisher would like to apologise for the errors introduced here. The errors have been corrected in the article online.The environment could alter growth and resistance tradeoffs in plants by affecting the ratio of resource allocation to various competing traits. Yet, how and why functional tradeoffs change over time and space is poorly understood particularly in long-lived conifer species. By establishing four common-garden test sites for five lodgepole pine populations in western Canada, combined with genomic sequencing, we revealed the decoupling pattern and genetic underpinnings of tradeoffs between height growth, drought resistance based on δ13C and dendrochronology, and metrics of pest resistance based on pest suitability ratings. Height and δ13C correlation displayed a gradient change in magnitude and/or direction along warm-to-cold test sites. All cold test sites across populations showed a positive height and δ13C relationship. However, we did not observe such a clinal correlation pattern between height or δ13C and pest suitability. Further, we found that the study populations exhibiting functional tradeoffs or synergies to various degrees in test sites were driven by non-adaptive evolutionary processes rather than adaptive evolution or plasticity. Finally, we found positive genetic relationships between height and drought or pest resistance metrics and probed five loci showing potential genetic tradeoffs between northernmost and the other populations. Our findings have implications for deciphering the ecological, evolutionary, and genetic bases of the decoupling of functional tradeoffs due to environmental change.This work was funded by Genome Canada, Genome Alberta through Alberta Economic Trade and evelopment, Genome British Columbia, the University of Alberta, the University of Calgary, the University of Cambridge, and the Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture (CE200100015).Peer reviewe

Trap trees: An effective method for monitoring mountain pine beetle activities in novel habitats

Mountain pine beetle (MPB) has recently expanded its range into the lodgepole pine forests in Alberta, Canada. However, it is unknown whether semiochemical tools developed in the beetleâ s historical range are suitable for monitoring MPB in the new environment. Thus, we conducted a three-year study to test new MPB monitoring tools in Alberta. A field trial selected a combination of MPB pheromones and two host volatiles. Using this combination, we baited different numbers of trees in triangle, square, or rectangle formations (spatial arrangements of trees) to determine how the densities of baited trees affect MPB attraction. Three plots, each made up of three formations, were arranged in a linear transect at various distances between formation boundaries. The proportion of baited trees mass attacked was highest in the square formation. However, the proportion of spillover (attacks on non-baited) trees mass-attacked was lower when formations were 1 km apart than 4 or 8 km apart. In a follow-up test of the square formation alone, there was no difference in trap tree effectiveness between 8 and 12 km distances. We suggest that four baited trees spaced 50 m apart in a square formation at 12 km distance can be used in the field.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Drought stress leads to systemic induced susceptibility to a nectrotrophic fungus associated with mountain pine beetle in <i>Pinus banksiana</i> seedlings

<div><p>Conifers have complex defense responses to initial attacks by insects and pathogens that can have cascading effects on success of subsequent colonizers. However, drought can affect a plant’s ability to respond to biotic agents by potentially altering the resources needed for the energetically costly production of induced defense chemicals. We investigated the impact of reduced water on induced chemical defenses of jack pine (<i>Pinus banksiana</i>) seedlings from initial attack by biotic agents and resistance to subsequent challenge inoculation with a pathogenic fungal associate of mountain pine beetle (<i>Dendroctonus ponderosae</i>), <i>Grosmannia clavigera</i>. Applications of phytohormones (methyl salicylate and methyl jasmonate) and <i>G</i>. <i>clavigera</i> were used for initial induction of defenses. Monoterpene concentrations varied with initial induction from fungal and phytohormone application while watering treatment had no effect. Seedlings treated with <i>G</i>. <i>clavigera</i> and methyl jasmonate had the greatest monoterpene concentrations compared to the control and methyl salicylate-treated seedlings. However, the monoterpene response to the challenge inoculation varied with watering treatments, not with prior induction treatments, with lower monoterpene concentrations in fungal lesions on seedlings in the low to moderate watering treatments compared to normal watering treatment. Furthermore, prior induction from phytohormones resulted in systemic cross-induction of resistance to <i>G</i>. <i>clavigera</i> under normal watering treatment but susceptibility under low watering treatment. Seedlings stressed by low water conditions, which also had lower stomatal conductance than seedlings in the normal watering treatment, likely allocated resources to initial defense response but were left unable to acquire further resources for subsequent responses. Our results demonstrate that drought can affect interactions among tree-infesting organisms through systemic cross-induction of susceptibility.</p></div

Response to multiple stressors in Pinus pinaster Ait.: conflicts between drought and herbivory stress with Hylobius abietis

2 páginas.- Resumen de la comunicación oral presentada en el Congreso celebrado en Jackson Hole, Wyoming, entre el 2 y el 4 de mayo de 2017.Because of their huge size and longevity, pines are exposed to numerous pests and pathogens, and have to cope with periods of severe abiotic stress such as water scarcity. Climate models predict an increase in mean annual temperatures and a decrease in precipitation, resulting in longer and more intense periods of drought. Associated to global change, an increase of the incidence of pests and pathogens has also been predicted. Understanding how pines are able to cope, at the same time, with both biotic and abiotic stress is, thus, necessary to know how they will finally respond to global change. Pines are isohydric species whose main mechanism to prevent water losses is the closure of stomata. Closing stomata under water deficit may imply a decrease in the carbon uptake needed for growth, reproduction and defenses. Hormonal cascading in response to both biotic and abiotic threats may also interact among each other altering the ability to tolerate each single stress. The aim of this study is to test how drought stress can constrain pine defensive responses to insect herbivory. For this purpose, 8 month-old seedlings of Maritime pine (Pinus pinaster Ait.) originating from three different populations known to differ in their tolerance to drought (San Ciprián, Coca and Oria) were submitted to three levels of water scarcity (control, moderate and severe drought stress) during four months and then subjected to herbivory (control and the pine weevil Hylobius abietis L.) for five days. Then, seedlings were harvested and biomass allocation, water potential, 13C concentration, non-structural carbohydrates and chemical defensive composition were studied. Water treatments promoted drought stress, measurable by a less discrimination to 13C, a decrease in water potential and reduced seedling dry weight in all populations. Moreover, the insect herbivore inflicted less damage on water-stressed than on well-watered plants. Pine responses to insect damage included alterations of the concentration of particular chemical defenses but these responses largely varied depending on the water treatment. Interactions between the experimental treatments and the population factor also revealed different strategies among pine populations to cope with the biotic and abiotic stressors. Overall, the results provide valuable information to understand how pines are able to tolerate at the time biotic and abiotic stressful conditions. These results will be helpful for forest management in a global change scenery.Peer reviewe

Using Structural Sustainability for Forest Health Monitoring and Triage: Case Study of a Mountain Pine Beetle (Dendroctonus ponderosae)-impacted Landscape

Heavy disturbance-induced mortality can negatively impact forest biota, functions, and services by drastically altering the forest structures that create stable environmental conditions. Disturbance impacts on forest structure can be assessed using structural sustainability⿿the degree of balance between living and dead portions of a tree population⿿s size-class distribution⿿which is the basis of baseline mortality analysis. This analysis uses a conditionally calibrated reference level (i.e., baseline mortality) against which to detect significant mortality deviations without need for historical references. Recently, a structural sustainability index was developed by parameterizing results of this analysis to allow spatial and temporal comparisons within or among forested landscapes. The utility of this index as a tool for forest health monitoring programs and triage decisions has not been examined. Here, we investigated this utility by retrospectively analyzing the structural sustainability of a mountain pine beetle (Dendroctonus ponderosae)-impacted, lodgepole pine (Pinus contorta)-dominated landscape annually from 2000 to 2006 as well as among watersheds. We show that temporal patterns of structural sustainability at the landscape-level reflect accumulating beetle-induced mortality as well as beetle-lodgepole pine ecology. At the watershed-level, this sustainability spatially varied with 2006 beetle-induced mortality. Further, structural sustainability satisfies key criteria for effective indicators of ecosystem change. We conclude that structural sustainability is a viable tool upon which to base or supplement forest health monitoring and triage programs, and could potentially increase the efficacy of such programs under current and future climate change-associated disturbance patterns

Evaluating Potential Fire Behavior in Lodgepole Pine-Dominated Forests after a Mountain Pine Beetle Epidemic in North-Central Colorado

A mountain pine beetle outbreak in Colorado lodgepole pine forests has altered stand and fuel characteristics that affect potential fire behavior. Using the Fire and Fuels Extension to the Forest Vegetation Simulator, potential fire behavior was modeled for uninfested and mountain pine beetle-affected plots 7 years after outbreak initiation and 10 and 80% projected tree fall using measured and projected fuel and stand characteristics. Under 90th percentile weather conditions, uninfested plots exhibited proportionally more crown fire than infested plots. Plots predicted to have crown fire were composed mainly of nonhost conifer species and had a lower and more continuous canopy than infested plots. Where surface fire was predicted to occur, live lodgepole pine was the only conifer present, and plots had significantly lower tree mortality from fire than plots predicted to have crown fire. Mountain pine beetle-induced changes in stand and fuel characteristics resulted in increased intensity of surface fire behavior. Furthermore, with 80% infested tree fall, potential smoke production was predicted to be higher. Tree species composition of stands pre and postbark beetle outbreak is important when identifying mountain pine beetle-caused changes to potential fire behavior

Fungal Volatiles Can Act as Carbon Sources and Semiochemicals to Mediate Interspecific Interactions Among Bark Beetle-Associated Fungal Symbionts.

Mountain pine beetle (Dendroctonus ponderosae) has killed millions of hectares of pine forests in western North America. Beetle success is dependent upon a community of symbiotic fungi comprised of Grosmannia clavigera, Ophiostoma montium, and Leptographium longiclavatum. Factors regulating the dynamics of this community during pine infection are largely unknown. However, fungal volatile organic compounds (FVOCs) help shape fungal interactions in model and agricultural systems and thus may be important drivers of interactions among bark beetle-associated fungi. We investigated whether FVOCs can mediate interspecific interactions among mountain pine beetle's fungal symbionts by affecting fungal growth and reproduction. Headspace volatiles were collected and identified to determine species-specific volatile profiles. Interspecific effects of volatiles on fungal growth and conidia production were assessed by pairing physically-separated fungal cultures grown either on a carbon-poor or -rich substrate, inside a shared-headspace environment. Fungal VOC profiles differed by species and influenced the growth and/or conidia production of the other species. Further, our results showed that FVOCs can be used as carbon sources for fungi developing on carbon-poor substrates. This is the first report demonstrating that FVOCs can drive interactions among bark beetle fungal symbionts, and thus are important factors in beetle attack success

Increment Coring Induced Traumatic Resin Ducts in White Spruce But Not in Lodgepole Pine

Injury from sampling increment cores may induce defense responses in trees, which may vary between species and reflect differing defense allocation strategies against attack by insects and pathogens. We recorded presence of systemic induction of traumatic resin ducts from early-season increment coring in mature white spruce (Picea glauca) and lodgepole pine (Pinus contorta var. latifolia) trees. In the year of coring, traumatic resin ducts formed three months later, 20 cm below the initial coring site in the xylem of white spruce and showed little variation in response among the spruce families. In contrast, lodgepole pine did not form traumatic resin ducts in trees cored earlier in the growing season. Although traumatic resin ducts are induced by biotic and abiotic disturbances, we found a species-specific defense response to increment coring in two common boreal forest tree species.Fil: Klutsch, Jennifer G.. University of Alberta; CanadáFil: Kee, Chen X.. University of Alberta; CanadáFil: Cappa, Eduardo Pablo. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación de Recursos Naturales. Instituto de Recursos Biológicos; Argentina. University of British Columbia; CanadáFil: Ratcliffe, Blaise. University of British Columbia; CanadáFil: Thomas, Barb R.. University of Alberta; CanadáFil: Erbilgin, Nadir. University of Alberta; Canad

Stand Characteristics and Downed Woody Debris Accumulations Associated with a Mountain Pine Beetle (Dendroctonus ponderosae Hopkins) Outbreak in Colorado

Lodgepole pine (Pinus contorta Dougl. ex Loud.)-dominated ecosystems in north-central Colorado are undergoing rapid and drastic changes associated with overstory tree mortality from a current mountain pine beetle (Dendroctonus ponderosae Hopkins) outbreak. To characterize stand characteristics and downed woody debris loads during the first 7 years of the outbreak, 221 plots (0.02 ha) were randomly established in infested and uninfested stands distributed across the Arapaho National Forest, Colorado. Mountain pine beetle initially attacked stands with higher lodgepole pine basal area, and lower density and basal area of Engelmann spruce (Picea engelmannii [Parry]), and subalpine fir (Abies lasiocarpa (Hook.) Nutt. var. lasiocarpa) compared to uninfested plots. Mountain pine beetle-affected stands had reduced total and lodgepole pine stocking and quadratic mean diameter. The density and basal area of live overstory lodgepole declined by 62% and 71% in infested plots, respectively. The mean diameter of live lodgepole pine was 53% lower than pre-outbreak in infested plots. Downed woody debris loads did not differ between uninfested plots and plots currently infested at the time of sampling to 3 or 4–7 years after initial infestation, but the projected downed coarse wood accumulations when 80% of the mountain pine beetle-killed trees fall indicated a fourfold increase. Depth of the litter layer and maximum height of grass and herbaceous vegetation were greater 4–7 years after initial infestation compared to uninfested plots, though understory plant percent cover was not different. Seedling and sapling density of all species combined was higher in uninfested plots but there was no difference between infested and uninfested plots for lodgepole pine alone. For trees ≥2.5 cm in diameter at breast height, the density of live lodgepole pine trees in mountain pine beetle-affected stands was higher than Engelmann spruce, subalpine fir, and aspen, (Populus tremuloides Michx.), in diameter classes comprised of trees from 2.5 cm to 30 cm in diameter, suggesting that lodgepole pine will remain as a dominant overstory tree after the bark beetle outbreak