Bacillus anthracis Bioterrorism Incident, Kameido, Tokyo, 1993

In July 1993, a liquid suspension of Bacillus anthracis was aerosolized from the roof of an eight-story building in Kameido, Tokyo, Japan, by the religious group Aum Shinrikyo. During 1999 to 2001, microbiologic tests were conducted on a liquid environmental sample originally collected during the 1993 incident. Nonencapsulated isolates of B. anthracis were cultured from the liquid. Multiple-locus, variable-number tandem repeat analysis found all isolates to be identical to a strain used in Japan to vaccinate animals against anthrax, which was consistent with the Aum Shinrikyo members’ testimony about the strain source. In 1999, a retrospective case-detection survey was conducted to identify potential human anthrax cases associated with the incident, but none were found. The use of an attenuated B. anthracis strain, low spore concentrations, ineffective dispersal, a clogged spray device, and inactivation of the spores by sunlight are all likely contributing factors to the lack of human cases

BioCaster: detecting public health rumors with a Web-based text mining system

Summary: BioCaster is an ontology-based text mining system for detecting and tracking the distribution of infectious disease outbreaks from linguistic signals on the Web. The system continuously analyzes documents reported from over 1700 RSS feeds, classifies them for topical relevance and plots them onto a Google map using geocoded information. The background knowledge for bridging the gap between Layman's terms and formal-coding systems is contained in the freely available BioCaster ontology which includes information in eight languages focused on the epidemiological role of pathogens as well as geographical locations with their latitudes/longitudes. The system consists of four main stages: topic classification, named entity recognition (NER), disease/location detection and event recognition. Higher order event analysis is used to detect more precisely specified warning signals that can then be notified to registered users via email alerts. Evaluation of the system for topic recognition and entity identification is conducted on a gold standard corpus of annotated news articles

Geographic and Temporal Trends in Influenzalike Illness, Japan, 1992–1999

Kriging analysis improved visualization and understanding of trends in seasonal ILI activity in Japan

Social contacts, vaccination decisions and influenza in Japan.

BACKGROUND: Contact patterns and vaccination decisions are fundamental to transmission dynamics of infectious diseases. We report on age-specific contact patterns in Japan and their effect on influenza vaccination behaviour. METHODS: Japanese adults (N=3146) were surveyed in Spring 2011 to assess the number of their social contacts within a 24 h period, defined as face-to-face conversations within 2 m, and gain insight into their influenza-related behaviour. We analysed the duration and location of contacts according to age. Additionally, we analysed the probability of vaccination and influenza infection in relation to the number of contacts controlling for individual's characteristics. RESULTS: The mean and median reported numbers of daily contacts were 15.3 and 12.0, respectively. School-aged children and young adults reported the greatest number of daily contacts, and individuals had the most contacts with those in the same age group. The age-specific contact patterns were different between men and women, and differed between weekdays and weekends. Children had fewer contacts between the same age groups during weekends than during weekdays, due to reduced contacts at school. The probability of vaccination increased with the number of contacts, controlling for age and household size. Influenza infection among unvaccinated individuals was higher than for those vaccinated, and increased with the number of contacts. CONCLUSIONS: Contact patterns in Japan are age and gender specific. These contact patterns, as well as their interplay with vaccination decisions and infection risks, can help inform the parameterisation of mathematical models of disease transmission and the design of public health policies, to control disease transmission

Transmission of Bordetella holmesii during Pertussis Outbreak, Japan

We describe the epidemiology of a pertussis outbreak in Japan in 2010–2011 and Bordetella holmesii transmission. Six patients were infected; 4 patients were students and a teacher at the same junior high school. Epidemiologic links were found between 5 patients. B. holmesii may have been transmitted from person to person

Geochemistry of low-molecular weight hydrocarbons in hydrothermal fluids from Middle Valley, northern Juan de Fuca Ridge

Author Posting. © Elsevier B.V., 2006. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 70 (2006): 2073-2092, doi:10.1016/j.gca.2006.01.015.Hydrothermal vent fluids from Middle Valley, a sediment-covered mid-ocean ridge on the northern Juan de Fuca Ridge, were sampled in July, 2000. Eight different vents with exit temperatures of 186 to 281°C were sampled from two areas of venting: the Dead Dog and ODP Mound fields. Fluids from the Dead Dog field are characterized by higher concentrations of ΣNH3 and organic compounds (C1-C4 alkanes, ethene, propene, benzene and toluene) compared with fluids from the ODP Mound field. The ODP Mound fluids, however, are characterized by higher C1/(C2+C3) and benzene:toluene ratios than those from the Dead Dog field. The aqueous organic compounds in these fluids have been derived from both bacterial processes (methanogenesis in low-temperature regions during recharge) as well as from thermogenic processes in higher-temperature portions of the subsurface reaction zone. As the sediments undergo hydrothermal alteration, carbon dioxide and hydrocarbons are released to solution as organic matter degrades via a stepwise oxidation process. Compositional and isotopic differences in the aqueous hydrocarbons indicate that maximum subsurface temperatures at the ODP Mound are greater than those at the Dead Dog field. Maximum subsurface temperatures were calculated assuming that thermodynamic equilibrium is attained between alkenes and alkanes, benzene and toluene, and carbon dioxide and methane. The calculated temperatures for alkene-alkane equilibrium are consistent with differences in the dissolved Cl concentrations in fluids from the two fields, and indicate that subsurface temperatures at the ODP Mound are hotter than those at the Dead Dog field. Temperatures calculated assuming benzene-toluene equilibrium and carbon dioxide-methane equilibrium are similar to observed exit temperatures, and do not record the hottest subsurface conditions. The difference in subsurface temperatures estimated using organic geochemical thermometers reflects subsurface cooling processes via mixing of a hot, low-salinity vapor with a cooler, seawater salinity fluid. Because of the disparate temperature dependence of alkene-alkane and benzene-toluene equilibria, the mixed fluid records both the high and low temperature equilibrium conditions. These calculations indicate that vapor-rich fluids are presently being formed in the crust beneath the ODP Mound, yet do not reach the surface due to mixing with the lower-temperature fluids.This work was funded by NSF OCE-9906752