Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal.

Archetypal human pluripotent stem cells (hPSC) are widely considered to be equivalent in developmental status to mouse epiblast stem cells, which correspond to pluripotent cells at a late post-implantation stage of embryogenesis. Heterogeneity within hPSC cultures complicates this interspecies comparison. Here we show that a subpopulation of archetypal hPSC enriched for high self-renewal capacity (ESR) has distinct properties relative to the bulk of the population, including a cell cycle with a very low G1 fraction and a metabolomic profile that reflects a combination of oxidative phosphorylation and glycolysis. ESR cells are pluripotent and capable of differentiation into primordial germ cell-like cells. Global DNA methylation levels in the ESR subpopulation are lower than those in mouse epiblast stem cells. Chromatin accessibility analysis revealed a unique set of open chromatin sites in ESR cells. RNA-seq at the subpopulation and single cell levels shows that, unlike mouse epiblast stem cells, the ESR subset of hPSC displays no lineage priming, and that it can be clearly distinguished from gastrulating and extraembryonic cell populations in the primate embryo. ESR hPSC correspond to an earlier stage of post-implantation development than mouse epiblast stem cells

AI is a viable alternative to high throughput screening: a 318-target study

: High throughput screening (HTS) is routinely used to identify bioactive small molecules. This requires physical compounds, which limits coverage of accessible chemical space. Computational approaches combined with vast on-demand chemical libraries can access far greater chemical space, provided that the predictive accuracy is sufficient to identify useful molecules. Through the largest and most diverse virtual HTS campaign reported to date, comprising 318 individual projects, we demonstrate that our AtomNet® convolutional neural network successfully finds novel hits across every major therapeutic area and protein class. We address historical limitations of computational screening by demonstrating success for target proteins without known binders, high-quality X-ray crystal structures, or manual cherry-picking of compounds. We show that the molecules selected by the AtomNet® model are novel drug-like scaffolds rather than minor modifications to known bioactive compounds. Our empirical results suggest that computational methods can substantially replace HTS as the first step of small-molecule drug discovery

Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal

Archetypal human pluripotent stem cells (hPSC) are widely considered to be equivalent in developmental status to mouse epiblast stem cells, which correspond to pluripotent cells at a late post-implantation stage of embryogenesis. Heterogeneity within hPSC cultures complicates this interspecies comparison. Here we show that a subpopulation of archetypal hPSC enriched for high self-renewal capacity (ESR) has distinct properties relative to the bulk of the population, including a cell cycle with a very low G1 fraction and a metabolomic profile that reflects a combination of oxidative phosphorylation and glycolysis. ESR cells are pluripotent and capable of differentiation into primordial germ cell-like cells. Global DNA methylation levels in the ESR subpopulation are lower than those in mouse epiblast stem cells. Chromatin accessibility analysis revealed a unique set of open chromatin sites in ESR cells. RNA-seq at the subpopulation and single cell levels shows that, unlike mouse epiblast stem cells, the ESR subset of hPSC displays no lineage priming, and that it can be clearly distinguished from gastrulating and extraembryonic cell populations in the primate embryo. ESR hPSC correspond to an earlier stage of post-implantation development than mouse epiblast stem cells

Ranging behavior of the Asian elephant in Sri Lanka

Abstract - We studied the ranging patterns of 10 elephants in and around the Yala protected area complex, southern Sri Lanka, using VHF radio telemetry. All tracked elephants displayed similar ranging patterns. The observed home ranges were small (mean=115.2±64.0 km2) relative to reported home ranges in India, possibly in response to high habitat productivity and abundant perennial water sources. Elephants showed high fidelity to their ranges. Home ranges had relatively large core areas, suggesting intensive use of habitat. No geographically distinct seasonal ranges or migratory behavior was observed. Home range overlap was high, and territoriality was absent. Male musth ranges were considerably larger than non-musth ranges and may signify mate searching. Most elephants ranged both in and outside protected areas, suggesting that resources outside protected areas were important for their survival. Thus, translocating and restricting elephants to protected areas will be detrimental to their survival, as it limits resource access. The ranging patterns of Asian elephants suggest that conservation of the species requires their management both in and outside protected areas. Zusammenfassung - Mittels VHF Telemetrie untersuchten wir die Streifgebiete von 10 Elefanten in und um den Yala Nationalpark im Süden Sri Lankas. Alle besenderten Elefanten zeigten ähnliche Bewegungsmuster. Im Vergleich zu Indien waren die beobachteten Reviere in Sri Lanka relativ klein (115.2±64.0 km2). Dies ist vermutlich eine Folge der hohen Habitatsproduktivität und der ganzjährigen Verfügbarkeit von Wasser in Sri Lanka. Die Elefanten zeigten sich ihrem Revier sehr treu. Die Streifgebiete hatten relativ grosse Aktivitätszentren, was auf eine intensive Nutzung des Habitats hindeutet. Es wurden weder geografisch unterschiedliche saisonale Reviere noch Migrationen beobachtet. Die Überlappung der Reviere war gross, und Territorialität war nicht vorhanden. Die Steifgebiete der Männchen in Musth waren deutlich grösser als die Gebiete ausserhalb der Musth. Die Ursache dafür könnte die Suche nach einem paarungsbereiten Weibchen sein. Die meisten Elefanten hielten sich sowohl innerhalb als auch ausserhalb des Yala Nationalparks auf, was darauf hinweist, dass die Gebiete ausserhalb des Parks für ihr Überleben wichtig sind. Demzufolge gefährden Umsiedlungen und Restriktion auf die Naturschutzgebiete das Überleben der Elefanten, da der Zugang zu den Ressourcen ausserhalb des Parks verwehrt wird. Die Bewegungsmuster der Elefanten deuten darauf hin, dass zur Arterhaltung Gebiete innerhalb und ausserhalb der Nationalparks berücksichtigt werden müssen

New Monoclonal Antibodies to Defined Cell Surface Proteins on Human Pluripotent Stem Cells.

The study and application of human pluripotent stem cells (hPSCs) will be enhanced by the availability of well-characterized monoclonal antibodies (mAbs) detecting cell-surface epitopes. Here, we report generation of seven new mAbs that detect cell surface proteins present on live and fixed human ES cells (hESCs) and human iPS cells (hiPSCs), confirming our previous prediction that these proteins were present on the cell surface of hPSCs. The mAbs all show a high correlation with POU5F1 (OCT4) expression and other hPSC surface markers (TRA-160 and SSEA-4) in hPSC cultures and detect rare OCT4 positive cells in differentiated cell cultures. These mAbs are immunoreactive to cell surface protein epitopes on both primed and naive state hPSCs, providing useful research tools to investigate the cellular mechanisms underlying human pluripotency and states of cellular reprogramming. In addition, we report that subsets of the seven new mAbs are also immunoreactive to human bone marrow-derived mesenchymal stem cells (MSCs), normal human breast subsets and both normal and tumorigenic colorectal cell populations. The mAbs reported here should accelerate the investigation of the nature of pluripotency, and enable development of robust cell separation and tracing technologies to enrich or deplete for hPSCs and other human stem and somatic cell types. Stem Cells 2017;35:626-640

New Monoclonal Antibodies to Defined Cell Surface Proteins on Human Pluripotent Stem Cells

The study and application of human pluripotent stem cells (hPSCs) will be enhanced by the availability of well-characterized monoclonal antibodies (mAbs) detecting cell-surface epitopes. Here, we report generation of seven new mAbs that detect cell surface proteins present on live and fixed human ES cells (hESCs) and human iPS cells (hiPSCs), confirming our previous prediction that these proteins were present on the cell surface of hPSCs. The mAbs all show a high correlation with POU5F1 (OCT4) expression and other hPSC surface markers (TRA-160 and SSEA-4) in hPSC cultures and detect rare OCT4 positive cells in differentiated cell cultures. These mAbs are immunoreactive to cell surface protein epitopes on both primed and naive state hPSCs, providing useful research tools to investigate the cellular mechanisms underlying human pluripotency and states of cellular reprogramming. In addition, we report that subsets of the seven new mAbs are also immunoreactive to human bone marrow-derived mesenchymal stem cells (MSCs), normal human breast subsets and both normal and tumorigenic colorectal cell populations. The mAbs reported here should accelerate the investigation of the nature of pluripotency, and enable development of robust cell separation and tracing technologies to enrich or deplete for hPSCs and other human stem and somatic cell types