Differential Privacy for Adaptive Weight Aggregation in Federated Tumor Segmentation

Federated Learning (FL) is a distributed machine learning approach that safeguards privacy by creating an impartial global model while respecting the privacy of individual client data. However, the conventional FL method can introduce security risks when dealing with diverse client data, potentially compromising privacy and data integrity. To address these challenges, we present a differential privacy (DP) federated deep learning framework in medical image segmentation. In this paper, we extend our similarity weight aggregation (SimAgg) method to DP-SimAgg algorithm, a differentially private similarity-weighted aggregation algorithm for brain tumor segmentation in multi-modal magnetic resonance imaging (MRI). Our DP-SimAgg method not only enhances model segmentation capabilities but also provides an additional layer of privacy preservation. Extensive benchmarking and evaluation of our framework, with computational performance as a key consideration, demonstrate that DP-SimAgg enables accurate and robust brain tumor segmentation while minimizing communication costs during model training. This advancement is crucial for preserving the privacy of medical image data and safeguarding sensitive information. In conclusion, adding a differential privacy layer in the global weight aggregation phase of the federated brain tumor segmentation provides a promising solution to privacy concerns without compromising segmentation model efficacy. By leveraging DP, we ensure the protection of client data against adversarial attacks and malicious participants

Bayesian Group Factor Analysis

We introduce a factor analysis model that summarizes the dependencies between observed variable groups, instead of dependencies between individual variables as standard factor analysis does. A group may correspond to one view of the same set of objects, one of many data sets tied by co-occurrence, or a set of alternative variables collected from statistics tables to measure one property of interest. We show that by assuming group-wise sparse factors, active in a subset of the sets, the variation can be decomposed into factors explaining relationships between the sets and factors explaining away set-specific variation. We formulate the assumptions in a Bayesian model which provides the factors, and apply the model to two data analysis tasks, in neuroimaging and chemical systems biology.Comment: 9 pages, 5 figure

Identification of structural features in chemicals associated with cancer drug response : a systematic data-driven analysis

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Initial Studies of Cavity Fault Prediction at Jefferson Laboratory

The Continuous Electron Beam Accelerator Facility (CEBAF) at Jefferson Laboratory is a CW recirculating linac that utilizes over 400 superconducting radio-frequency (SRF) cavities to accelerate electrons up to 12 GeV through 5-passes. Recent work has shown that, given RF signals from a cavity during a fault as input, machine learning approaches can accurately classify the fault type. In this paper we report on initial results of predicting a fault onset using only data prior to the failure event. A data set was constructed using time-series data immediately before a fault (’unstable’) and 1.5 seconds prior to a fault (’stable’) gathered from over 5,000 saved fault events. The data was used to train a binary classifier. The results gave key insights into the behavior of several fault types and provided motivation to investigate whether data prior to a failure event could also predict the type of fault. We discuss our method using a sliding window approach and report on initial results. Recent modifications to the low-level RF control system will provide access to streaming signals and we outline a path forward for leveraging deep learning on streaming dat

Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach

Motivation: Proteomics profiling is increasingly being used for molecular stratification of cancer patients and cell-line panels. However, systematic assessment of the predictive power of large-scale proteomic technologies across various drug classes and cancer types is currently lacking. To that end, we carried out the first pan-cancer, multi-omics comparative analysis of the relative performance of two proteomic technologies, targeted reverse phase protein array (RPPA) and global mass spectrometry (MS), in terms of their accuracy for predicting the sensitivity of cancer cells to both cytotoxic chemotherapeutics and molecularly targeted anticancer compounds.Results: Our results in two cell-line panels demonstrate how MS profiling improves drug response predictions beyond that of the RPPA or the other omics profiles when used alone. However, frequent missing MS data values complicate its use in predictive modeling and required additional filtering, such as focusing on completely measured or known oncoproteins, to obtain maximal predictive performance. Rather strikingly, the two proteomics profiles provided complementary predictive signal both for the cytotoxic and targeted compounds. Further, information about the cellular-abundance of primary target proteins was found critical for predicting the response of targeted compounds, although the non-target features also contributed significantly to the predictive power. The clinical relevance of the selected protein markers was confirmed in cancer patient data. These results provide novel insights into the relative performance and optimal use of the widely applied proteomic technologies, MS and RPPA, which should prove useful in translational applications, such as defining the best combination of omics technologies and marker panels for understanding and predicting drug sensitivities in cancer patients

Using AI for Management of Field Emission in SRF Linacs

Field emission control, mitigation, and reduction is critical for reliable operation of high gradient superconducting radio-frequency (SRF) accelerators. With the SRF cavities at high gradients, the field emission of electrons from cavity walls can occur and will impact the operational gradient, radiological environment via activated components, and reliability of CEBAF’s two linacs. A new effort has started to minimize field emission in the CEBAF linacs by re-distributing cavity gradients. To measure radiation levels, newly designed neutron and gamma radiation dose rate monitors have been installed in both linacs. Artificial intelligence (AI) techniques will be used to identify cavities with high levels of field emission based on control system data such as radiation levels, cryogenic readbacks, and vacuum loads. The gradients on the most offending cavities will be reduced and compensated for by increasing the gradients on least offensive cavities. Training data will be collected during this year’s operational program and initial implementation of AI models will be deployed. Preliminary results and future plans are presented

Fabrication of 316L stainless steel (SS316L) foam via powder compaction method

Metal foam is the cellular structures that made from metal and have pores in their structures. Metal foam also known as the porous metals, which express that the structure has a large volume of porosities with the value of up to 0.98 or 0.99. Porous 316L stainless steel was fabricated by powder metallurgy route with the composition of the SS316L metal powder as metallic material, polyethylene glycol (PEG) and Carbamide as the space holder with the composition of 95, 90, 85, 80, and 75 of weight percent (wt. %). The powders were mixed in a ball mill at 60 rpm for 10 minutes and the mixtures were put into the mold for the pressing. The samples were uniaxially pressed at 3 tons and heat treated by using box furnace at different sintering temperature which are 870°C, 920°C, and 970°C separately. The suitable sintering temperature was obtained from the Thermal Gravimetric Analysis (TGA). There are several tests that have been conducted in order to characterize the physical properties of metal foam such as density and porosity testing, and the morphological testing (Scanning Electron Microscopy (SEM)), and Energy Dispersive X-ray (EDX). From the result, it can be conclude that, the sintering temperature of 920°C was compatible temperature in order to produce the metal foams which have large pores. Other than that, the composition of 85 and 75 wt. % is the best compositions in order to creates the homogenous mixture and allow the formation of large pore uniformly compared to other compositions which in line with the objective to produce foams with low density and high porosity which suitable for implant applications. The average pore size was within range 38.555μm to 54.498 μm which can be classified as micro pores

An integrative machine learning approach to discovering multi-level molecular mechanisms of obesity using data from monozygotic twin pairs

We combined clinical, cytokine, genomic, methylation and dietary data from 43 young adult monozygotic twin pairs (aged 22-36 years, 53% female), where 25 of the twin pairs were substantially weight discordant (delta body mass index > 3 kg m(-2)). These measurements were originally taken as part of the TwinFat study, a substudy of The Finnish Twin Cohort study. These five large multivariate datasets (comprising 42, 71, 1587, 1605 and 63 variables, respectively) were jointly analysed using an integrative machine learning method called group factor analysis (GFA) to offer new hypotheses into the multi-molecular-level interactions associated with the development of obesity. New potential links between cytokines and weight gain are identified, as well as associations between dietary, inflammatory and epigenetic factors. This encouraging case study aims to enthuse the research community to boldly attempt new machine learning approaches which have the potential to yield novel and unintuitive hypotheses. The source code of the GFA method is publically available as the R package GFA.Peer reviewe