Discussant\u27s response to toward standards for statistical sampling

https://egrove.olemiss.edu/dl_proceedings/1021/thumbnail.jp

Sequencing and analysis of the gastrula transcriptome of the brittle star Ophiocoma wendtii

Background The gastrula stage represents the point in development at which the three primary germ layers diverge. At this point the gene regulatory networks that specify the germ layers are established and the genes that define the differentiated states of the tissues have begun to be activated. These networks have been well-characterized in sea urchins, but not in other echinoderms. Embryos of the brittle star Ophiocoma wendtii share a number of developmental features with sea urchin embryos, including the ingression of mesenchyme cells that give rise to an embryonic skeleton. Notable differences are that no micromeres are formed during cleavage divisions and no pigment cells are formed during development to the pluteus larval stage. More subtle changes in timing of developmental events also occur. To explore the molecular basis for the similarities and differences between these two echinoderms, we have sequenced and characterized the gastrula transcriptome of O. wendtii. Methods Development of Ophiocoma wendtii embryos was characterized and RNA was isolated from the gastrula stage. A transcriptome data base was generated from this RNA and was analyzed using a variety of methods to identify transcripts expressed and to compare those transcripts to those expressed at the gastrula stage in other organisms. Results Using existing databases, we identified brittle star transcripts that correspond to 3,385 genes, including 1,863 genes shared with the sea urchin Strongylocentrotus purpuratus gastrula transcriptome. We characterized the functional classes of genes present in the transcriptome and compared them to those found in this sea urchin. We then examined those members of the germ-layer specific gene regulatory networks (GRNs) of S. purpuratus that are expressed in the O. wendtii gastrula. Our results indicate that there is a shared ‘genetic toolkit’ central to the echinoderm gastrula, a key stage in embryonic development, though there are also differences that reflect changes in developmental processes. Conclusions The brittle star expresses genes representing all functional classes at the gastrula stage. Brittle stars and sea urchins have comparable numbers of each class of genes and share many of the genes expressed at gastrulation. Examination of the brittle star genes in which sea urchin orthologs are utilized in germ layer specification reveals a relatively higher level of conservation of key regulatory components compared to the overall transcriptome. We also identify genes that were either lost or whose temporal expression has diverged from that of sea urchins

Radar and rocket comparison of UHF radar scattering from auroral electrojet irregularities: Implications for a nanosatellite radar

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/95174/1/jgra19910.pd

Distributions of nuclear fuel-reprocessing tracers in the Arctic Ocean: Indications of Russian river influence

Radionuclide sampling in 1986 and 1993 in the Canada Basin, and in 1993 in the Amundsen Basin and on the adjacent Laptev shelf, provides new insights into the origin, timing, pathways, and mechanisms for dispersal of non-fallout radioactive tracers in the Arctic Ocean. First, samples from the Beaufort Sea shelf, slope, and adjacent basin show a four-fold increase in 129I concentrations from 1986 to 1993. Second, anthropogenic non-fallout radionuclide concentrations in the Beaufort Sea increase with proximity to slope boundary currents. Third, there is evidence for riverine contributions of anthropogenic radionuclides to surface waters of the Amundsen Basin and the Laptev continental shelf. This evidence includes high surface water burdens of 237Np and 129I, with the maximum in anthropogenic 129I found in the least saline and most 18O-depleted waters, consistent with an origin in high-latitude runoff. Additionally, the 237Np/129I atom ratios in the Laptev Sea and Amundsen Basin in 1993 were significantly lower than observed elsewhere in the Arctic Ocean and can be reasonably explained by 129I added during transit of the Russian shelves. The 240Pu/239Pu ratios in the water column were mostly near 0.18, consistent both with stratospheric bomb fallout and with the discharged-weighted mean Sellafield ratio during 1966-1985. In the least saline water samples collected at the most shallow Laptev shelf station, however, the Pu ratios were lower, consistent with a non-European nuclear fuel reprocessing source. There are clear secondary maxima in 237Np and 129I near 1000 m in the Amundsen Basin, likely associated with the Barents Sea branch of Atlantic water. Finally, the 129I/salinity and 129I/δ18O relationships in the Amundsen and Canada Basins at middepths are indistinguishable, suggesting effective horizontal dispersion

Direct Determination of Multiple Ligand Interactions with the Extracellular Domain of the Calcium Sensing Receptor

Numerous in vivo functional studies have indicated that the dimeric extracellular domain (ECD) of the CaSR plays a crucial role in regulating Ca2+ homeostasis by sensing Ca2+ and L-Phe. However, direct interaction of Ca2+ and Phe with the receptor’s ECD and the resultant impact on its structure and associated conformational changes have been hampered by the large size of the ECD, its high degree of glycosylation, and the lack of biophysical methods to monitor weak interactions in solution. In the present study, we purified the glycosylated extracellular domain of CaSR (ECD) (residues 20~612), containing either complex or high mannose N-glycan structures depending on the host cell line employed for recombinant expression. Both glycosylated forms of the CaSR ECD were purified as dimers and exhibit similar secondary structures with ~50% -helix, ~20% -sheet content and a well buried Trp environment. Using various spectroscopic methods, we have shown that both protein variants bind Ca2+ with a Kd of 3.0~5.0 mM. The local conformational changes of the proteins induced by their interactions with Ca2+ were visualized by NMR with specific 15N Phe-labeled forms of the ECD. Saturation transfer difference (STD) NMR approaches demonstrated for the first time a direct interaction between the CaSR ECD and L-Phe. We further demonstrated that L-Phe increases the binding affinity of the CaSR ECD for Ca2+. Our findings provide new insights into the mechanisms by which Ca2+ and amino acids regulate the CaSR and may pave the way for exploration of the structural properties of CaSR and other members of family C of the GPCR superfamily

WISE/NEOWISE Preliminary Analysis and Highlights of the 67P/Churyumov-Gerasimenko Near Nucleus Environs

On January 18-19 and June 28-29 of 2010, the Wide-field Infrared Survey Explorer (WISE) spacecraft imaged the Rosetta mission target, comet 67P/Churyumov-Gerasimenko. We present a preliminary analysis of the images, which provide a characterization of the dust environment at heliocentric distances similar to those planned for the initial spacecraft encounter, but on the outbound leg of its orbit rather than the inbound. Broad-band photometry yields low levels of CO2 production at a comet heliocentric distance of 3.32 AU and no detectable production at 4.18 AU. We find that at these heliocentric distances, large dust grains with mean grain diameters on the order of a millimeter or greater dominate the coma and evolve to populate the tail. This is further supported by broad-band photometry centered on the nucleus, which yield an estimated differential dust particle size distribution with a power law relation that is considerably shallower than average. We set a 3-sigma upper limit constraint on the albedo of the large-grain dust at <= 0.12. Our best estimate of the nucleus radius (1.82 +/- 0.20 km) and albedo (0.04 +/- 0.01) are in agreement with measurements previously reported in the literature

Hydrothermal Chimney Distribution on the Endeavour Segment, Juan de Fuca Ridge

The Endeavour Segment of the Juan de Fuca Ridge is well known for its abundance of hydrothermal vents and chimneys. One‐meter scale multibeam mapping data collected by an autonomous undersea vehicle revealed 572 chimneys along the central 14 km of the segment, although only 47 are named and known to be active. Hydrothermal deposits are restricted to the axial graben and the near‐rims of the graben above a seismically mapped axial magma lens. The sparse eruptive activity on the segment during the last 4,300 years has not buried inactive chimneys, as occurs at more magmatically robust mid‐ocean ridges

Do Antiplatelet Medications Prevent Poor Clinical Outcomes in Patients With Community-Acquired Pneumonia? Results From the Community-Acquired Pneumonia Organization International Cohort Study

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