Beef Cattle Instance Segmentation Using Fully Convolutional Neural Network

In this paper we present a novel instance segmentation algorithm that extends a fully convolutional network to learn to label objects separately without prediction of regions of interest. We trained the new algorithm on a challenging CCTV recording of beef cattle, as well as benchmark MS COCO and Pascal VOC datasets. Extensive experimentation showed that our approach outperforms the state-of-the-art solutions by up to 8% on our data

Circlator: automated circularization of genome assemblies using long sequencing reads

The assembly of DNA sequence data is undergoing a renaissance thanks to emerging technologies capable of producing reads tens of kilobases long. Assembling complete bacterial and small eukaryotic genomes is now possible, but the final step of circularizing sequences remains unsolved. Here we present Circlator, the first tool to automate assembly circularization and produce accurate linear representations of circular sequences. Using Pacific Biosciences and Oxford Nanopore data, Circlator correctly circularized 26 of 27 circularizable sequences, comprising 11 chromosomes and 12 plasmids from bacteria, the apicoplast and mitochondrion of Plasmodium falciparum and a human mitochondrion. Circlator is available at http://sanger-pathogens.github.io/circlator/

A geometric proof of the Kochen-Specker no-go theorem

We give a short geometric proof of the Kochen-Specker no-go theorem for non-contextual hidden variables models. Note added to this version: I understand from Jan-Aake Larsson that the construction we give here actually contains the original Kochen-Specker construction as well as many others (Bell, Conway and Kochen, Schuette, perhaps also Peres).Comment: This paper appeared some years ago, before the author was aware of quant-ph. It is relevant to recent developments concerning Kochen-Specker theorem

Designing zeolite catalysts for shape-selective reactions: Chemical modification of surfaces for improved selectivity to dimethylamine in synthesis from methanol and ammonia

The relative contributions of external and intracrystalline acidic sites of small pore H-RHO zeolite for the selective synthesis of methylamines from methanol and ammonia have been studied. Nonselective surface reactions which produce predominantly trimethylamine can be eliminated by “capping” the external acidic sites with trimethylphosphite (TMP) and other reagents, thus improving the selectivity toward the formation of dimethylamine. For small pore zeolites, neither the zeolite pore size nor the internal acidic sites is significantly affected by this treatment. In situ infrared and MAS-NMR studies show that TMP reacts irreversibly with the zeolite acidic sites via a modified Arbusov rearrangement to form surface-bound dimethylmethylphosphonate

Are the distributions of Fast Radio Burst properties consistent with a cosmological population?

High time resolution radio surveys over the last few years have discovered a population of millisecond-duration transient bursts called Fast Radio Bursts (FRBs), which remain of unknown origin. FRBs exhibit dispersion consistent with propagation through a cold plasma and dispersion measures indicative of an origin at cosmological distances. In this paper we perform Monte Carlo simulations of a cosmological population of FRBs, based on assumptions consistent with observations of their energy distribution, their spatial density as a function of redshift and the properties of the interstellar and intergalactic media. We examine whether the dispersion measures, fluences, inferred redshifts, signal-to-noises and effective widths of known FRBs are consistent with a cosmological population. Statistical analyses indicate that at least 50 events at Parkes are required to distinguish between a constant co-moving FRB density, and a FRB density that evolves with redshift like the cosmological star formation rate density.Comment: 11 pages, 7 figures, 3 table

Relativistic spin precession in the binary PSR J1141−-6545

PSR J1141$-$6545 is a precessing binary pulsar that has the rare potential to reveal the two-dimensional structure of a non-recycled pulsar emission cone. It has undergone $\sim 25 \deg$ of relativistic spin precession in the $\sim18$ years since its discovery. In this paper, we present a detailed Bayesian analysis of the precessional evolution of the width of the total intensity profile, to understand the changes to the line-of-sight impact angle ($\beta$) of the pulsar using four different physically motivated prior distribution models. Although we cannot statistically differentiate between the models with confidence, the temporal evolution of the linear and circular polarisations strongly argue that our line-of-sight crossed the magnetic pole around MJD 54000 and that only two models remain viable. For both these models, it appears likely that the pulsar will precess out of our line-of-sight in the next $3-5$ years, assuming a simple beam geometry. Marginalising over $\beta$ suggests that the pulsar is a near-orthogonal rotator and provides the first polarization-independent estimate of the scale factor ($\mathbb{A}$) that relates the pulsar beam opening angle ($\rho$) to its rotational period ($P$) as $\rho = \mathbb{A}P^{-0.5}$ : we find it to be $> 6 \rm~deg~s^{0.5}$ at 1.4 GHz with 99\% confidence. If all pulsars emit from opposite poles of a dipolar magnetic field with comparable brightness, we might expect to see evidence of an interpulse arising in PSR J1141$-$6545, unless the emission is patchy.Comment: Accepted for publication in Astrophysical Journal Letter

Kondo resonances and anomalous gate dependence of electronic conduction in single-molecule transistors

We report Kondo resonances in the conduction of single-molecule transistors based on transition metal coordination complexes. We find Kondo temperatures in excess of 50 K, comparable to those in purely metallic systems. The observed gate dependence of the Kondo temperature is inconsistent with observations in semiconductor quantum dots and a simple single-dot-level model. We discuss possible explanations of this effect, in light of electronic structure calculations.Comment: 5 pages, four figures. Supplementary material at http://www.ruf.rice.edu/~natelson/publications.htm