Carbon Cycling in Mangrove Ecosystem of Western Bay of Bengal (India)

Carbon cycling in the mangrove ecosystem is one of the important processes determining the potential of coastal vegetation (mangroves), sediment, and adjoining waters to carbon absorption. This paper investigates the carbon storage capacity of five dominant mangrove species (Avicenia marina, Avicenia officinalis, Excoecaria agallocha, Rhizophora mucronata, and Xylocarpous granatum) on the east coast of the Indian mangrove along with the role they play in the carbon cycling phenomenon. Soil and water parameters were analyzed simultaneously with Above Ground Biomass (AGB) and Above Ground Carbon (AGC) values for 10 selected stations along. The total carbon (TC) calculated from the study area varied from 51.35 ± 6.77 to 322.47 ± 110.79 tons per hectare with a mean total carbon of 117.89 ± 28.90 and 432.64 ± 106.05 tons of carbon dioxide equivalent (CO2e). The alarm of the Intergovernmental Panel on Climate Change for reducing carbon emissions has been addressed by calculating the amount of carbon stored in biotic (mangroves) and abiotic (soil and water) compartments. This paper focuses on the technical investigations on the factors that control the carbon cycling process in mangroves. This blue carbon will help policymakers to develop a sustainable relationship between marine resource management and coastal inhabitants so that carbon trading markets can be developed, and the ecosystem is balancedThis research was funded by the MINISTRY OF EARTH SCIENCES, GOVT. OF INDIA, grant number MoES/36/OOIS/Extra/44/2015 dated 29 November 2016S

Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics

SummaryA novel method to flexibly fit atomic structures into electron microscopy (EM) maps using molecular dynamics simulations is presented. The simulations incorporate the EM data as an external potential added to the molecular dynamics force field, allowing all internal features present in the EM map to be used in the fitting process, while the model remains fully flexible and stereochemically correct. The molecular dynamics flexible fitting (MDFF) method is validated for available crystal structures of protein and RNA in different conformations; measures to assess and monitor the fitting process are introduced. The MDFF method is then used to obtain high-resolution structures of the E. coli ribosome in different functional states imaged by cryo-EM

Co- and post-translational translocation through the protein-conducting channel:analogous mechanisms at work?

Many proteins are translocated across, or integrated into, membranes. Both functions are fulfilled by the 'translocon/translocase', which contains a membrane-embedded proteinconducting channel (PCC) and associated soluble factors that drive translocation and insertion reactions using nucleotide triphosphates as fuel. This perspective focuses on reinterpreting existing experimental data in light of a recently proposed PCC model comprising a front-to-front dimer of SecY or Sec61 heterotrimeric complexes. In this new framework, we propose (i) a revised model for SRP-SR-mediated docking of the ribosome-nascent polypeptide to the PCC; (ii) that the dynamic interplay between protein substrate, soluble factors and PCC controls the opening and closing of a transmembrane channel across, and/or a lateral gate into, the membrane; and (iii) that co-and post-translational translocation, involving the ribosome and SecA, respectively, not only converge at the PCC but also use analogous mechanisms for coordinating protein translocation

Carbon Cycling in Mangrove Ecosystem of Western Bay of Bengal (India)

Carbon cycling in the mangrove ecosystem is one of the important processes determining the potential of coastal vegetation (mangroves), sediment, and adjoining waters to carbon absorption. This paper investigates the carbon storage capacity of five dominant mangrove species (Avicenia marina, Avicenia officinalis, Excoecaria agallocha, Rhizophora mucronata, and Xylocarpous granatum) on the east coast of the Indian mangrove along with the role they play in the carbon cycling phenomenon. Soil and water parameters were analyzed simultaneously with Above Ground Biomass (AGB) and Above Ground Carbon (AGC) values for 10 selected stations along. The total carbon (TC) calculated from the study area varied from 51.35 ± 6.77 to 322.47 ± 110.79 tons per hectare with a mean total carbon of 117.89 ± 28.90 and 432.64 ± 106.05 tons of carbon dioxide equivalent (CO2e). The alarm of the Intergovernmental Panel on Climate Change for reducing carbon emissions has been addressed by calculating the amount of carbon stored in biotic (mangroves) and abiotic (soil and water) compartments. This paper focuses on the technical investigations on the factors that control the carbon cycling process in mangroves. This blue carbon will help policymakers to develop a sustainable relationship between marine resource management and coastal inhabitants so that carbon trading markets can be developed, and the ecosystem is balanced

Biophysical characterization of SipA, an actin-binding protein from Salmonella enterica

An essential step in the pathogenesis of ########## ######## infections is bacterial entry into non-phagocytic cells of the intestinal epithelium. Proteins injected by ########## into host cells stimulate cellular responses that lead to extensive actin cytoskeleton reorganization and subsequent bacterial uptake. One of these proteins, SipA, modulates actin dynamics by directly binding to F-actin. We have biophysically characterized a C-terminal fragment, SipA , which has previously been shown to retain activity. Our results show that SipA exhibits an elongated shape with a predominantly helical conformation and predict the existence of a coiled-coil domain. We suggest that the protein is able to span two adjacent actin monomers in a filament and propose a model that is consistent with the observed effects of SipA on actin dynamics and Factin stability and morphology. 2000 Federation of European Biochemical Societies. Published by Elsevier Science B.V. All rights reserved

Climate change-induced salinity variation impacts on a stenoecious mangrove species in the Indian Sundarbans

The alterations in the salinity profile are an indirect, but potentially sensitive, indicator for detecting changes in precipitation, evaporation, river run-off, glacier retreat, and ice melt. These changes have a high impact on the growth of coastal plant species, such as mangroves. Here, we present estimates of the variability of salinity and the biomass of a stenoecious mangrove species (Heritiera fomes, commonly referred to as Sundari) in the aquatic subsystem of the lower Gangetic delta based on a dataset from 2004 to 2015. We highlight the impact of salinity alteration on the change in aboveground biomass of this endangered species that, due to different salinity profile in the western and central sectors of the lower Gangetic plain, shows an increase only in the former sector, where the salinity is dropping and low growth in the latter, where the salinity is increasing

Climate change-induced salinity variation impacts on a stenoecious mangrove species in the Indian Sundarbans

The alterations in the salinity profile are an indirect, but potentially sensitive, indicator for detecting changes in precipitation, evaporation, river run-off, glacier retreat, and ice melt. These changes have a high impact on the growth of coastal plant species, such as mangroves. Here, we present estimates of the variability of salinity and the biomass of a stenoecious mangrove species (Heritiera fomes, commonly referred to as Sundari) in the aquatic subsystem of the lower Gangetic delta based on a dataset from 2004 to 2015. We highlight the impact of salinity alteration on the change in aboveground biomass of this endangered species that, due to different salinity profile in the western and central sectors of the lower Gangetic plain, shows an increase only in the former sector, where the salinity is dropping and low growth in the latter, where the salinity is increasing

Phytoplankton cell volume and diversity in Indian Sundarbans

208-215Present study focuses on the cell volume and diversity of phytoplankton, which are unique indicators of aquatic salinity. We compared the cell volume and Shannon Weiner Species Diversity Index values of the documented phytoplankton in two significantly different salinity sectors in the Indian Sundarbans: Western and Central. Western sector exhibited higher Shannon Weiner Species Diversity Index value (mean $´ value = 3.2715) compared to that of the central sector (mean$´ value = 3.2504). Cell volume of the observed species was also more in the western sector (118.83 μm3 to 304322.23 μm3) compared to the central sector (114.23 μm3 to 295199.31 μm3), thus indicating the regulatory role of salinity on the free floating producer community in the aquatic ecosystem. ANOVA results indicate significant differences (<span style="font-family:Symbol;mso-bidi-font-family: Symbol">R < 0.05) in phytoplankton diversity and cell volume between the western and central Indian Sundarbans. </span