KCNN2 polymorphisms and cardiac tachyarrhythmias

Potassium calcium-activated channel subfamily N member 2 (KCNN2) encodes an integral membrane protein that forms small-conductance calcium-activated potassium (SK) channels. Recent studies in animal models show that SK channels are important in atrial and ventricular repolarization and arrhythmogenesis. However, the importance of SK channels in human arrhythmia remains unclear. The purpose of the present study was to test the association between genetic polymorphism of the SK2 channel and the occurrence of cardiac tachyarrhythmias in humans. We enrolled 327 Han Chinese, including 72 with clinically significant ventricular tachyarrhythmias (VTa) who had a history of aborted sudden cardiac death (SCD) or unexplained syncope, 98 with a history of atrial fibrillation (AF), and 144 normal controls. We genotyped 12 representative tag single nucleotide polymorphisms (SNPs) across a 141-kb genetic region containing the KCNN2 gene; these captured the full haplotype information. The rs13184658 and rs10076582 variants of KCNN2 were associated with VTa in both the additive and dominant models (odds ratio [OR] 2.89, 95% confidence interval [CI] = 1.505-5.545, P = 0.001; and OR 2.55, 95% CI = 1.428-4.566, P = 0.002, respectively). After adjustment for potential risk factors, the association remained significant. The population attributable risks of these 2 variants of VTa were 17.3% and 10.6%, respectively. One variant (rs13184658) showed weak but significant association with AF in a dominant model (OR 1.91, CI = 1.025-3.570], P = 0.042). There was a significant association between the KCNN2 variants and clinically significant VTa. These findings suggest an association between KCNN2 and VTa; it also appears that KCNN2 variants may be adjunctive markers for risk stratification in patients susceptible to SCD

Using sequential indicator simulation to assess the uncertainty of delineating heavy-metal contaminated soils

Mapping the spatial distribution of soil pollutants is essential for delineating contaminated areas. Currently, geostatistical interpolation, kriging, is increasingly used to estimate pollutant concentrations in soils. The kriging-based approach, indicator kriging (IK), may be used to model the uncertainty of mapping. However, a smoothing effect is usually produced when using kriging in pollutant mapping. The detailed spatial patterns of pollutants could, therefore, be lost. The local uncertainty of mapping pollutants derived by the IK technique is referred to as the conditional cumulative distribution function (ccdf) for one specific location (i.e. single-location uncertainty). The local uncertainty information obtained by IK is not sufficient as the uncertainty of mapping at several locations simultaneously (i.e. multi-location uncertainty or spatial uncertainty) is required to assess the reliability of the delineation of contaminated areas. The simulation approach, sequential indicator simulation (SIS), which has the ability to model not only single, but also multi-location uncertainties, was used, in this study, to assess the uncertainty of the delineation of heavy metal contaminated soils. To illustrate this, a data set of Cu concentrations in soil from Taiwan was used. The results show that contour maps of Cu concentrations generated by the SIS realizations exhausted all the spatial patterns of Cu concentrations without the smoothing effect found when using the kriging method. Based on the SIS realizations, the local uncertainty of Cu concentrations at a specific location of x0, refers to the probability of the Cu concentration z(x0) being higher than the defined threshold level of contamination (zc). This can be written as ProbSIS[z(x0)>zc], representing the probability of contamination. The probability map of ProbSIS[z(x0)>zc] can then be used for delineating contaminated areas. In addition, the multi-location uncertainty of an area A,delineated as contaminated based on the probability map of ProbSIS[z(x0)>zc], can be calculated to assess the reliability of delineation. Multi-location uncertainty refers to the probability of Cu concentrations in several locations, x01, x02, . . ., x0m, in the area A, being higher than the threshold (zc) as denoted by ProbSIS[z(x01)>zc, z(x02)>zc, . . ., andz(x0m)>zc] or ProbSIS[z(A)>zc]. The multilocation uncertainty ProbSIS[z(A)>zc], obtained from the SIS, can be used to assess the reliability of delineation for regions suspected of contamination, (A), which has been delineated as contaminated. Reliance on this information facilitates the decision making process in determining which areas are contaminated and require cleanup action

Changes in soil organic carbon and nitrogen stocks in organic farming practice and abandoned tea plantation

Abstract Background The restoration of conventional tea plantations and the adoption of organic farming practices could impact soil organic carbon (SOC) and nitrogen (N) stocks. This study investigated the soil properties, SOC and N contents and stocks, and their vertical distributions of a secondary forest restored from an abandoned conventional tea plantation and a converted organic tea plantation. An adjacent conventional tea plantation employing similar intermediate farming served as a comparison. Results Within a 50-cm depth, the secondary forest exhibited a higher SOC stock of 115.53 ± 7.23 Mg C ha− 1 compared to 92.1 ± 8.54 Mg C ha− 1 for the conventional tea plantation. No significant differences in N stocks were seen between the two land uses. Significantly high SOC and N contents and stocks were found in the 0–10 cm layer of the secondary forest compared to the conventional tea plantation. No significant disparities in SOC and N stocks were found between the conventional and organic tea plantations within the 50 cm depth (92.1 ± 8.54 Mg C ha− 1 and 10.06 ± 1.01 Mg N ha− 1 vs. 97.47 ± 1.53 Mg C ha− 1 and 9.70 ± 0.10 Mg N ha− 1). However, higher levels of SOC and N contents and stocks were observed at a depth of 10 cm in the conventional tea plantation and below 10 cm in the organic tea plantation. Conclusions The C and N inputs derived from high litter production at the top soil strongly contributed to higher SOC and N contents and stocks in the secondary forest. The application of soybean amendments in the conventional tea plantation and the longer tea plantation age of the organic tea plantation influenced their distribution of SOC and N contents and stocks, respectively. Reverting a conventional tea plantation into a secondary forest contributed to C recovery and reaccumulation. The conventional tea plantation, employing similar intermediate farming practices, increased SOC and N contents and stocks in the surface soil compared to the organic tea plantation. However, adopting organic farming did not significantly increase SOC stocks compared to the conventional tea plantation

Additional file 1 of Changes in soil organic carbon and nitrogen stocks in organic farming practice and abandoned tea plantation

Supplementary Material

Modeling Alleviative Effects of Ca, Mg, and K on Cu-Induced Oxidative Stress in Grapevine Roots Grown Hydroponically

The aim of this study was to determine the pattern of alleviation effects of calcium (Ca), magnesium (Mg), and potassium (K) on copper (Cu)-induced oxidative toxicity in grapevine roots. Root growth, Cu and cation accumulation, reactive oxygen species (ROS) production, and antioxidant activities were examined in grapevine roots grown in nutrient solutions. The experimental setting was divided into three sets; each set contained a check (Hoagland solution only) and four treatments of simultaneous exposure to 15 μM Cu with four cation levels (i.e., Ca set: 0.5, 2.5, 5, and 10 mM Ca; Mg set: 0.2, 2, 4, and 8 mM Mg; K set: 0.6, 2.4, 4.8, and 9.6 mM K). A damage assessment model (DAM)-based approach was then developed to construct the dose-effect relationship between cation levels and the alleviation effects on Cu-induced oxidative stress. Model parameterization was performed by fitting the model to the experimental data using a nonlinear regression estimation. All data were analyzed by a one-way analysis of variance (ANOVA), followed by multiple comparisons using the least significant difference (LSD) test. The results showed that significant inhibitory effects on the elongation of roots occurred in grapevine roots treated with 15 μM Cu. The addition of Ca and Mg significantly mitigated phytotoxicity in root growth, whereas no significant effect of K treatment on root growth was found. With respect to oxidative stress, ROS and malondialdehyde (MDA) contents, as well as antioxidant (superoxide dismutase (SOD), catalase (CAT), and ascorbate peroxidase (APX)) activities, were stimulated in the roots after exposure to 15 μM Cu for three days. Moreover, H2O2 levels decreased significantly as Ca, Mg, and K concentrations increased, indicating that the coexistence of these cations effectively alleviated Cu-induced oxidative stress; however, alleviative effects were not observed in the assessment of the MDA content and antioxidant enzyme activities. Based on the DAM, an exponential decay equation was developed and successfully applied to characterize the alleviative effects of Ca, Mg, and K on the H2O2 content induced by Cu in the roots. In addition, compared with Mg and K, Ca was the most effective cation in the alleviation of Cu-induced ROS. Based on the results, it could be concluded that Cu inhibited root growth and Ca and Mg absorption in grapevines, and stimulated the production of ROS, lipid peroxidation, and antioxidant enzymes. Furthermore, the alleviation effects of cations on Cu-induced ROS were well described by the DAM-based approach developed in the present study

Arsenic phytotoxicity and accumulation in rice seedlings grown in arsenic-contaminated soils as influenced by the characteristics of organic matter amendments and soils

Organic matter (OM) application into soils is a common agricultural practice. Previous studies have shown that in arsenic (As)-contaminated paddy soils, OM has the potential to alter the behavior of As and affects the growth and As accumulation of rice plants. In this study, pot experiments were conducted to investigate the differences in the amounts of As released into soil solutions, its toxicity, and accumulation in rice seedlings caused by application of three different OM amendments [soybean meal (SB), sugarcane dreg compost (SC), and cattle-dung compost (CD)]. These OM amendments were each applied to three As-contaminated soils, Guandu (Gd), Pinchen (Pc), and Chengchung (Cf), which have different characteristics. The results indicate that after addition of two easily decomposable OMs (SB and SC), the As toxicity and concentrations increased in rice plants, especially in As-spiked Cf soils which had low As retention capacity. This was the result of elevated As concentration in soil solutions due to a decrease in soil redox potential and competition between dissolved organic carbon (DOC) and As for sorption sites, as well as the formation of As-DOC complexes. However, there were no significant effects on plant growth and As accumulation in rice seedlings after treatments with CD (not easily decomposable OM). Another important finding was that the amount of iron plaque on the surface of rice roots increased with OM amendments in the Gd soils rich in iron oxides and hydroxides, thus reducing the As uptake by rice plants. These results suggest that the characteristics of OM and soils should be considered when OM amendments are applied to As-contaminated soils

Field experiment for determining lead accumulation in rice grains of different genotypes and correlation with iron oxides deposited on rhizosphere soil

Paddy rice (Oryza sativa L.) is a major staple crop in Asia. However, heavy metal accumulation in paddy soil poses a health risk for rice consumption. Although plant uptake of Pb is usually low, Pb concentrations in rice plants have been increasing with Pb contamination in paddy fields. It is known that iron oxide deposits in the rhizosphere influence the absorption of soil Pb by rice plants. In this study, 14 rice cultivars bred in Taiwan, including ten japonica cultivars (HL21, KH145, TC192, TK9, TK14, TK16, TN11, TNG71, TNG84, and TY3) and four indica cultivars (TCS10, TCS17, TCSW2, and TNGS22), were used in a field experiment. We investigated the genotypic variation in rice plant Pb in relation to iron oxides deposited in the rhizosphere, as seen in a suspiciously contaminated site in central Taiwan. The results showed that the cultivars TCSW2, TN11, TNG71, and TNG84 accumulated brown rice Pb exceeding the tolerable level of 0.2 mg kg(-1). In contrast, the cultivars TNGS22, TK9, TK14, and TY3 accumulated much lower brown rice Pb (<0.1 mg kg(-1)); therefore, they should be prioritized as safe cultivars for sites with potential contamination. Moreover, the iron oxides deposited on the rhizosphere soil show stronger affinity to soil-available Pb than those on the root surface to formiron plaque. The relative tendency of Pb sequestration toward rhizosphere soil was negatively correlated with the Pb concentrations in brown rice. The iron oxides deposited on the rhizosphere soil but not on the root surface to form iron plaque dominate Pb sequestration in the rhizosphere. Therefore, the enhancement of iron oxide deposits on the rhizosphere soil could serve as a barrier preventing soil Pb on the root surface and result in reduced Pb accumulation in brown rice

MOESM1 of Effects of adjacent land-use types on the distribution of soil organic carbon stocks in the montane area of central Taiwan

Additional file 1: Table S1. General physical and chemical properties of soil pedons in different land-use types