Analysis of stayability in South African Angus cattle using a threshold model

The objectives of the study were to estimate genetic parameters for stayability in the South African Angus cattle and to compare the sire and animal threshold models. Data and pedigree information were obtained from the Integrated Registration and Genetic Information System of South Africa. Stayability was defined as a probability that a cow remained in the herd until four (STAY4), five (STAY5), six (STAY6), seven (STAY7) and eight years of age (STAY8), given that she was a dam. Cows that were in the herd by a specific age were assigned a “1” or a “0”, otherwise. The proportions of successful stayability were 0.63, 0.57, 0.49, 0.42, and 0.37 for STAY4, STAY5, STAY6, STAY7 and STAY8, respectively. Estimates of genetic parameters were obtained from sire and animal threshold models using AIREML algorithm. The model included the fixed effect of contemporary group and random effects of sire or animal genetic effect and the residual. Heritability estimates from the sire model were 0.26 ± 0.08, 0.26 ± 0.09, 0.30 ± 0.09, 0.24 ± 0.10 and 0.27 ± 0.11 for STAY4, STAY5, STAY6, STAY7 and STAY8, respectively. Corresponding estimates from the animal model were 0.20 ± 0.11, 0.20 ± 0.11, 0.20 ± 0.12, 0.18 ± 0.13 and 0.20 ± 0.14. Estimates from the sire and animal models were consistent. Results from the current study indicate that direct selection for stayability could be effective. However, the long generation interval required to obtain accurate estimates of genetic merit may slow genetic progress for stayability at older ages

Estimates of genetic parameters and effect of inbreeding on milk yield and composition in South African Jersey cows

The effect of inbreeding on the 305-d yields of milk, fat and protein, and the percentages of fat and protein in the first three lactations was estimated using records on the South African Jersey cows that participated in the National Dairy Animal Improvement Scheme. Inbreeding coefficients were estimated using the entire pedigree records of the Jersey breed and ranged from 0 to 42%. Data were analyzed using a repeatability animal model. The statistical model included the fixed effects of herd-year-season, age of the cow at calving, calving interval, inbreeding as a discrete or continuous variable and random effects of direct additive genetic, permanent environment of the cow and the residual effects. The multitrait derivative-free REML algorithm was used to obtain estimates of the variance components, ratios and empirical best linear unbiased estimates of the effects of inbreeding. Estimates of heritability were 0.26 (±0.009), 0.19 (±0.008), 0.23 (±0.008), 0.39 (±0.009), and 0.53 (±0.009) for milk, fat and protein yields and fat and protein percent, respectively. Corresponding estimates of the ratio of permanent environmental effect of the cow to total phenotypic variance were 0.20 (±0.008), 0.18 (±0.007), 0.21 (±0.007), 0.14 (±0.008) and 0.13 (±0.008). The regression coefficients for yields (kg) of milk, fat and protein were -15.42 (±1.13), -0.64 (±0.05), and -0.59 (±0.04), and 0.0011 (±0.0005) and 0.0003 (±0.0003) for percent (%) of fat and protein for each 1% increase in inbreeding, respectively. These results provide evidence of inbreeding depression for milk yield and composition traits in the South African Jersey population. Keywords: Dairy cattle, inbreeding depression, 305-d yield South African Journal of Animal Science Vol. 38 (2) 2008: pp. 119-12

The effect of herd of origin by year on post-weaning traits of young beef bulls at centralized testing centres in South Africa

The effects of herd of origin by year on the average daily gain (ADG), average daily feed intake (DFI), shoulder height (SDH) and scrotal circumference (SCR) of beef bulls at centralized test centres in South Africa were investigated using data of Bonsmara cattle. Data consisted of post-weaning traits of beef bulls tested between 1990 and 2003, with available weaning weight (WWT) and weaning management group information as well as weaning weights of their contemporaries. A multiple-trait animal model including ADG, DFI, SDH and SCR, together with WWT was used. The model for WWT (adjusted to 205 days of age and age of dam by sex of calf classes) included the fixed effect of management group and random effects of direct additive genetic and dam effects, while the model for post-weaning traits included fixed effects of test group and age of the bull at the end of test (fitted as linear and quadratic regressions) and random effects of direct additive genetic and herd of origin by year (HY) effects. Variance components were estimated using REML procedures. Heritability estimates were 0.27, 0.34, 0.36, 0.51 and 0.46 for WWT, ADG, DFI, SDH and SCR, respectively. The contribution of HY effects to the phenotypic variance of ADG, DFI, SDH and SCR were 9%, 10%, 6% and 5%, respectively. Inclusion of HY effect resulted in the re-ranking of sires, with rank correlations ranging from 0.86 to 0.98 among the top sires, across traits. These results suggest that the HY effect should be included in the model for the national genetic evaluation of post-weaning traits of beef bulls measured at centralized testing centres in South Africa. South African Journal of Animal Science Vol. 36(1) 2006: 33-3

Rate of inbreeding and effective population size in four major South African dairy cattle breeds

Pedigree information on the registered South African Ayrshire (n = 47 116), Guernsey (n = 18 766), Holstein (n = 892 458) and Jersey (n = 314 403) breeds was analyzed to determine the rate of inbreeding and effective population sizes for the period 1960 to 2003. Inbreeding coefficients were calculated using the Animal Breeder's Tool Kit. The mean inbreeding coefficients for 2003 were 2.02%, 2.04%, 2.30%, and 3.05% for the Ayrshire, Guernsey, Holstein and Jersey, respectively. The corresponding rates of inbreeding per year were 0.05%, 0.05%, 0.06%, and 0.07% indicating that inbreeding is accumulating at a slightly higher rate in Jersey compared to the other three breeds. However, the rates of inbreeding in the current study are still considerably lower than the acceptable rate of less than 0.5% per year. Estimates of effective population sizes were 148, 165, 137, and 108 for the Ayrshire, Guernsey, Holstein and Jersey, respectively. Results indicate that the impact of inbreeding on genetic variability is still minimal. However, the impact of inbreeding on phenotypic performance on traits of economic importance was not investigated in the current study and should therefore receive future consideration. South African Journal of Animal Science Vol. 36(1) 2006: 50-5

In vitro anti-malarial interaction and gametocytocidal activity of cryptolepine

YesBackground: Discovery of novel gametocytocidal molecules is a major pharmacological strategy in the elimination and eradication of malaria. The high patronage of the aqueous root extract of the popular West African anti-malarial plant Cryptolepis sanguinolenta (Periplocaceae) in traditional and hospital settings in Ghana has directed this study investigating the gametocytocidal activity of the plant and its major alkaloid, cryptolepine. This study also investigates the anti-malarial interaction of cryptolepine with standard anti-malarials, as the search for new anti-malarial combinations continues. Methods: The resazurin-based assay was employed in evaluating the gametocytocidal properties of C. sanguinolenta and cryptolepine against the late stage (IV/V) gametocytes of Plasmodium falciparum (NF54). A fixed ratio method based on the SYBR Green I fluorescence-based assay was used to build isobolograms from a combination of cryptolepine with four standard anti-malarial drugs in vitro using the chloroquine sensitive strain 3D7. Results: Cryptolepis sanguinolenta ( IC50 = 49.65 nM) and its major alkaloid, cryptolepine ( IC50 = 1965 nM), showed high inhibitory activity against the late stage gametocytes of P. falciparum (NF54). In the interaction assays in asexual stage, cryptolepine showed an additive effect with both lumefantrine and chloroquine with mean ΣFIC50s of 1.017 ± 0.06 and 1.465 ± 0.17, respectively. Cryptolepine combination with amodiaquine at therapeutically relevant concentration ratios showed a synergistic effect (mean ΣFIC50 = 0.287 ± 0.10) whereas an antagonistic activity (mean ΣFIC50 = 4.182 ± 0.99) was seen with mefloquine. Conclusions: The findings of this study shed light on the high gametocytocidal properties of C. sanguinolenta and cryptolepine attributing their potent anti-malarial activity mainly to their effect on both the sexual and asexual stages of the parasite. Amodiaquine is a potential drug partner for cryptolepine in the development of novel fixed dose combinations

Controlled Chaos of Polymorphic Mucins in a Metazoan Parasite (Schistosoma mansoni) Interacting with Its Invertebrate Host (Biomphalaria glabrata)

Invertebrates were long thought to possess only a simple, effective and hence non-adaptive defence system against microbial and parasitic attacks. However, recent studies have shown that invertebrate immunity also relies on immune receptors that diversify (e.g. in echinoderms, insects and mollusks (Biomphalaria glabrata)). Apparently, individual or population-based polymorphism-generating mechanisms exists that permit the survival of invertebrate species exposed to parasites. Consequently, the generally accepted arms race hypothesis predicts that molecular diversity and polymorphism also exist in parasites of invertebrates. We investigated the diversity and polymorphism of parasite molecules (Schistosoma mansoni Polymorphic Mucins, SmPoMucs) that are key factors for the compatibility of schistosomes interacting with their host, the mollusc Biomphalaria glabrata. We have elucidated the complex cascade of mechanisms acting both at the genomic level and during expression that confer polymorphism to SmPoMuc. We show that SmPoMuc is coded by a multi-gene family whose members frequently recombine. We show that these genes are transcribed in an individual-specific manner, and that for each gene, multiple splice variants exist. Finally, we reveal the impact of this polymorphism on the SmPoMuc glycosylation status. Our data support the view that S. mansoni has evolved a complex hierarchical system that efficiently generates a high degree of polymorphism—a “controlled chaos”—based on a relatively low number of genes. This contrasts with protozoan parasites that generate antigenic variation from large sets of genes such as Trypanosoma cruzi, Trypanosoma brucei and Plasmodium falciparum. Our data support the view that the interaction between parasites and their invertebrate hosts are far more complex than previously thought. While most studies in this matter have focused on invertebrate host diversification, we clearly show that diversifying mechanisms also exist on the parasite side of the interaction. Our findings shed new light on how and why invertebrate immunity develops

Genomic and functional analyses of mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance.

CAPRISA, 2016.Abstract available in PDF file

Voices of the hungry: a qualitative measure of household food access and food insecurity in South Africa

South Africa is rated a food secure nation, but large numbers of households within the country have inadequate access to nutrient-rich diverse foods. The study sought to investigate households’ physical and economic access and availability of food, in relation to local context which influences households’ access to and ability to grow food which may affect the dietary quality. We sought to understand self-reported healthy diets, food insecurity from the perspective of people who experienced it, barriers to household food security and perceptions and feelings on food access as well as strategies households use to cope with food shortages and their perceptions on improving household food security

Live and Let Dye: Visualizing the Cellular Compartments of the Malaria Parasite Plasmodium falciparum

Malaria remains one of the deadliest diseases worldwide and it is caused by the protozoan parasite Plasmodium spp. Parasite visualization is an important tool for the correct detection of malarial cases but also to understand its biology. Advances in visualization techniques promote new insights into the complex life cycle and biology of Plasmodium parasites. Live cell imaging by fluorescence microscopy or flow cytometry are the foundation of the visualization technique for malaria research. In this review, we present an overview of possibilities in live cell imaging of the malaria parasite. We discuss some of the state-of-the-art techniques to visualize organelles and processes of the parasite and discuss limitation and advantages of each technique. © 2019 International Society for Advancement of Cytometry

Sire x ecological region interaction in Bonsmara cattle

No Abstract