The influence of weight and gender on intestinal bacterial community of wild largemouth bronze gudgeon (Coreius guichenoti, 1874)

© 2016 The Author(s). Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.Background: Largemouth bronze gudgeon (Coreius guichenoti) is of economic importance in China, distributed in upstream regions of the Yangtze River in China. But it has recently dramatically declined and is close to elimination. However, there is little knowing about the character of its intestinal microbiota. This study was conducted to elucidate the intestinal microbiota of wild largemouth bronze gudgeon with different body weight and gender. Results: Thirty wild largemouth bronze gudgeon were measured for body length and body weight, and identified for male and female according to gonadal development, and thereafter the intestinal microbiota’s were assessed by MiSeq sequencing of 16S rRNA genes. The results revealed that phyla Proteobacteria and Tenericutes were dominant in wild largemouth bronze gudgeon intestine independent of the body weight. Shannon’s and Inverse Simpson’s diversity indexes were significant (P < 0.05) different between male and female fish. The phylum profile in the intestine of male fish revealed that phylum Proteobacteria was dominant, in contrast to female fish where five phyla Tenericutes, Proteobacteria, Firmicutes, Fusobacteria and Spirochaetes were dominant. The genus profile revealed that genera Shewanella and Unclassified bacteria were dominant in male fish, while genus Mycoplasma was dominant in female fish. Conclusions: Our results revealed that the intestinal microbial community of wild largemouth bronze gudgeon was dominated by the phyla Proteobacteria and Tenericutes regardless of the different body weight, but the communities are significant different between male and female fish. These results provide a theoretical basis to understand the biological mechanisms relevant to the protection of the endangered fish species

Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz

The present study assesses the diversity and composition of sediment bacterial and microeukaryotic communities from deep-sea mud volcanoes (MVs) associated with strike-slip faults in the South-West Iberian Margin (SWIM). We used a 16S/18S rRNA gene based pyrosequencing approach to characterize and correlate the sediment bacterial and microeukaryotic communities from MVs with differing gas seep regimes and from an additional site with no apparent seeping activity. In general, our results showed significant compositional changes of bacterial and microeukaryotic communities in sampling sites with different seepage regimes. Sediment bacterial communities were enriched with Methylococcales (putative methanotrophs) but had lower abundances of Rhodospirillales, Nitrospirales and SAR202 in the more active MVs. Within microeukaryotic communities, members of the Lobosa (lobose amoebae) were enriched in more active MVs. We also showed a strong correlation between Methylococcales populations and lobose amoeba in active MVs. This study provides baseline information on the diversity and composition of bacterial and microeukaryotic communities in deep-sea MVs associated with strike-slip faults

Quantitative relationships between phytoplankton, bacteria and protists in an Aegean semi-enclosed embayment (Maliakos Gulf, Greece)

The seasonal variations of temperature, dissolved organic carbon (DOC), chlorophyll a (chl a), and bacterial and protistan abundance were investigated in an enclosed Eastern Mediterranean embayment over an 8 mo period. DOC levels in the gulf were high, likely due to allochthonous input through freshwater discharge. However, after the end of spring, when allochthonous input was minimal, bacterial abundance was linearly related to chi a and DOG, suggesting that during this period the remaining DOC pool (probably autochthonous DOG) was important. Bacterial abundance was significantly correlated with the biomass of the phytoplankton at the end of spring and throughout summer. A correspondence of protistan abundance with bacteria, especially during the warm months, when the phytoplankton biomass was low, suggests that the microbial loop is the dominant component of the food web structure during the oligotrophic period of the year

Mussel farming impacts on trophic status and benthic community structure in Maliakos Gulf (Eastern Mediterranean)

The impact of shellfish farming on the water column nutrient concentration and the benthic community structure was investigated seasonally at a mussel farm (Mytilus galloprovincialis L.) of Maliakos Gulf (Eastern Mediterranean). In most cases concentration of nutrients and chl a at the farm site was lower than those observed at the control sites. Statistical analysis in concentration of all nutrients and chl a indicated significant interactions between sites and seasons, which in all cases were temporal. Furthermore, no significant interactions were found between sites and seasons for all sediment and benthic community parameters, except for Shannon-Wiener diversity index and species richness. The significant interactions detected in the biotic data were temporal. Analysis of similarity and similarity percentages analysis revealed a certain fluctuation of benthic macrofaunal community during the overall sampling year mainly due to temporal rather than spatial effects. Cluster analysis and multidimensional scaling ordination plot indicated the clearly separation of the farm site and the control sites in most of the seasons. K-dominance curves showed small difference in elevation and overlap indicating minimal difference in biological stress between the farm site and the control sites. All the above indicates that probably the farming of mussels was beneficial for the trophic status of Maliakos Gulf and that there was a minimal environmental stress caused by the shellfish farming for the surrounding benthic environment