Live imaging of whole mouse embryos during gastrulation : migration analyses of epiblast and mesodermal cells

During gastrulation in the mouse embryo, dynamic cell movements including epiblast invagination and mesodermal layer expansion lead to the establishment of the three-layered body plan. The precise details of these movements, however, are sometimes elusive, because of the limitations in live imaging. To overcome this problem, we developed techniques to enable observation of living mouse embryos with digital scanned light sheet microscope (DSLM). The achieved deep and high time-resolution images of GFP-expressing nuclei and following 3D tracking analysis revealed the following findings: (i) Interkinetic nuclear migration (INM) occurs in the epiblast at embryonic day (E)6 and 6.5. (ii) INM-like migration occurs in the E5.5 embryo, when the epiblast is a monolayer and not yet pseudostratified. (iii) Primary driving force for INM at E6.5 is not pressure from neighboring nuclei. (iv) Mesodermal cells migrate not as a sheet but as individual cells without coordination

Quark mass and condensate in HQCD

We extend the Sakai-Sugimoto holographic model of QCD (HQCD) by including the scalar bi-fundamental "tachyon" field in the 8-brane-anti-8-brane probe theory. We show that this field is responsible both for the spontaneous breaking of the chiral symmetry, and for the generation of (current algebra) quark masses, from the point of view of the bulk theory. As a by-product we show how this leads to the Gell-Mann- Oakes-Renner relation for the pion mass.Comment: 23 pages, 7 figures; v2: corrected typos in eqs. (4.3), (4.4), (4.5), (4.9) and (4.11), and corrected figures 3, 4, 5 and 6; v3: section 5.3 on the pion mass rewritten in a clearer way, version published in JHE

Chiral Condensate in Holographic QCD with Baryon Density

We consider the chiral condensate in the baryonic dense medium using the generalized Sakai-Sugimoto model. It is defined as the vacuum expectation value of open Wilson line that is proposed to be calculated by use of the area of world-sheet instanton. We evaluate it in confined as well as deconfined phase. In both phases, the chiral condensate has a minimum as a function of baryon density. In the deconfined phase, taking into account the chiral symmetry restoration, we classify the behavior of chiral condensate into three types. One can set the parameter of the theory such that the results, in low but sufficiently higher density, is in agreement with the expectation from QCD.Comment: 23 pages, 8 figure

High energy, high resolution photoelectron spectroscopy of Co2Mn(1-x)Fe(x)Si

This work reports on high resolution photoelectron spectroscopy for the valence band of Co2Mn(1-x)Fe(x)Si (x=0,0.5,1) excited by photons of about 8 keV energy. The measurements show a good agreement to calculations of the electronic structure using the LDA+U scheme. It is shown that the high energy spectra reveal the bulk electronic structure better compared to low energy XPS spectra. The high resolution measurements of the valence band close to the Fermi energy indicate the existence of the gap in the minority states for all three alloys.Comment: 14 pages, 5 figures, submitted to J. Phys. D: Appl. Phy

Intersecting D4-branes Model of Holographic QCD and Tachyon Condensation

We consider the intersecting D4-brane and anti-D4-brane model of holographic QCD, motivated by the model that has recently been suggested by Van Raamsdonk and Whyte. We analyze such D4-branes by the use of the action with a bi-fundamental ``tachyon'' field, so that we find the classical solutions describing the intersecting D4-branes and the U-shaped D4-branes. We show that the ``tachyon'' field in the bulk theory provides a current quark mass and a quark condensate to the dual gauge theory and that the lowest modes of mesons obtain mass via tachyon condensation. Then evaluating the properties of a pion, one can reproduce Gell-Mann-Oakes-Renner relation.Comment: 24 pages, 5 figures; v2: refs. added; v3: discussions on Chern-Simons terms are adde

Simultaneous disruption of two DNA polymerases, Polη and Polζ, in Avian DT40 cells unmasks the role of Polη in cellular response to various DNA lesions

Replicative DNA polymerases are frequently stalled by DNA lesions. The resulting replication blockage is released by homologous recombination (HR) and translesion DNA synthesis (TLS). TLS employs specialized TLS polymerases to bypass DNA lesions. We provide striking in vivo evidence of the cooperation between DNA polymerase η, which is mutated in the variant form of the cancer predisposition disorder xeroderma pigmentosum (XP-V), and DNA polymerase ζ by generating POLη−/−/POLζ−/− cells from the chicken DT40 cell line. POLζ−/− cells are hypersensitive to a very wide range of DNA damaging agents, whereas XP-V cells exhibit moderate sensitivity to ultraviolet light (UV) only in the presence of caffeine treatment and exhibit no significant sensitivity to any other damaging agents. It is therefore widely believed that Polη plays a very specific role in cellular tolerance to UV-induced DNA damage. The evidence we present challenges this assumption. The phenotypic analysis of POLη−/−/POLζ−/− cells shows that, unexpectedly, the loss of Polη significantly rescued all mutant phenotypes of POLζ−/− cells and results in the restoration of the DNA damage tolerance by a backup pathway including HR. Taken together, Polη contributes to a much wide range of TLS events than had been predicted by the phenotype of XP-V cells

Comments on Baryons in Holographic QCD

We generalize the description of baryons as instantons of Sakai-Sugimoto model to the case where the flavor branes are non-anti-podal. The later corresponds to quarks with a "string endpoint mass". We show that the baryon vertex is located on the flavor branes and hence the generalized baryons also associate with instantons. We calculate the baryon mass spectra, the isoscalar and axial mean square radii, the isoscalar and isovector magnetic moments and the axial coupling as a function of the mass scale M_{KK} and the location \zeta of the tip of U-shaped flavor D8-branes. We determine the values of M_{KK} and \zeta from a best fit comparison with the experimental data. The later comes out to be in a forbidden region, which may indicate that the incorporation of baryons in Sakai-Sugimoto model has to be modified. We discuss the analogous baryons in a non-critical gravity model. A brief comment on the single flavor case (N_f=1) is also made.Comment: 40 pages, 12 figures; v2: typos corrected and refs. added; v3: footnote added and typos correcte

Role of Muscarinic Acetylcholine Receptors in Serial Feature-Positive Discrimination Task during Eyeblink Conditioning in Mice.

We investigated the role of muscarinic acetylcholine receptors (mAChRs) in eyeblink serial feature-positive discrimination learning in mice using the mAChR antagonist. A 2-s light cue was delivered 5 or 6 s before the presentation of a 350-ms tone paired with a 100-ms periorbital electrical shock (cued trial) but not before the tone-alone presentation (non-cued trial). Mice received 30 cued and 30 non-cued trials each day in a random order. We found that saline-injected control mice were successfully discriminating between cued and non-cued trials within a few days of conditioning. The mice responded more frequently to the tone in cued trials than in non-cued trials. Analysis of conditioned response (CR) dynamics revealed that the CR onset latency was shorter in cued trials than in non-cued trials, despite the CR peak amplitude not differing significantly between the two conditions. In contrast, scopolamine-injected mice developed an equal number of CRs with similar temporal patterns irrespective of the presence of the cue during the 7 days of conditioning, indicating in a failure to acquire conditional discrimination. In addition, the scopolamine administration to the control mice after they had successfully acquired discrimination did not impair the conditional discrimination and expression of pre-acquired CR. These results suggest that mAChRs may play a pivotal role in memory formation in the conditional brain state associated with the feature cue; however they are unlikely to be involved in the development of discrimination after conditional memory had formed in the serial feature-positive discrimination task during eyeblink conditioning

Stabilization by Fusion to the C-terminus of Hyperthermophile Sulfolobus tokodaii RNase HI: A Possibility of Protein Stabilization Tag

RNase HI from the hyperthermophile Sulfolobus tokodaii (Sto-RNase HI) is stabilized by its C-terminal residues. In this work, the stabilization effect of the Sto-RNase HI C-terminal residues was investigated in detail by thermodynamic measurements of the stability of variants lacking the disulfide bond (C58/145A), or the six C-terminal residues (ΔC6) and by structural analysis of ΔC6. The results showed that the C-terminal does not affect overall structure and stabilization is caused by local interactions of the C-terminal, suggesting that the C-terminal residues could be used as a “stabilization tag.” The Sto-RNase HI C-terminal residues (-IGCIILT) were introduced as a tag on three proteins. Each chimeric protein was more stable than its wild-type protein. These results suggested the possibility of a simple stabilization technique using a stabilization tag such as Sto-RNase HI C-terminal residues

Change in hippocampal theta oscillation associated with multiple lever presses in a bimanual two-lever choice task for robot control in rats.

Hippocampal theta oscillations have been implicated in working memory and attentional process, which might be useful for the brain-machine interface (BMI). To further elucidate the properties of the hippocampal theta oscillations that can be used in BMI, we investigated hippocampal theta oscillations during a two-lever choice task. During the task body-restrained rats were trained with a food reward to move an e-puck robot towards them by pressing the correct lever, ipsilateral to the robot several times, using the ipsilateral forelimb. The robot carried food and moved along a semicircle track set in front of the rat. We demonstrated that the power of hippocampal theta oscillations gradually increased during a 6-s preparatory period before the start of multiple lever pressing, irrespective of whether the correct lever choice or forelimb side were used. In addition, there was a significant difference in the theta power after the first choice, between correct and incorrect trials. During the correct trials the theta power was highest during the first lever-releasing period, whereas in the incorrect trials it occurred during the second correct lever-pressing period. We also analyzed the hippocampal theta oscillations at the termination of multiple lever pressing during the correct trials. Irrespective of whether the correct forelimb side was used, the power of hippocampal theta oscillations gradually decreased with the termination of multiple lever pressing. The frequency of theta oscillation also demonstrated an increase and decrease, before and after multiple lever pressing, respectively. There was a transient increase in frequency after the first lever press during the incorrect trials, while no such increase was observed during the correct trials. These results suggested that hippocampal theta oscillations reflect some aspects of preparatory and cognitive neural activities during the robot controlling task, which could be used for BMI