20 research outputs found
Visualization of proteomics data using R and bioconductor.
Data visualization plays a key role in high-throughput biology. It is an essential tool for data exploration allowing to shed light on data structure and patterns of interest. Visualization is also of paramount importance as a form of communicating data to a broad audience. Here, we provided a short overview of the application of the R software to the visualization of proteomics data. We present a summary of R's plotting systems and how they are used to visualize and understand raw and processed MS-based proteomics data.LG was supported by the
European Union 7th Framework Program (PRIME-XS project,
grant agreement number 262067) and a BBSRC Strategic Longer
and Larger grant (Award BB/L002817/1). LMB was supported
by a BBSRC Tools and Resources Development Fund (Award
BB/K00137X/1). TN was supported by a ERASMUS Placement
scholarship.This is the final published version of the article. It was originally published in Proteomics (PROTEOMICS Special Issue: Proteomics Data Visualisation Volume 15, Issue 8, pages 1375–1389, April 2015. DOI: 10.1002/pmic.201400392). The final version is available at http://onlinelibrary.wiley.com/doi/10.1002/pmic.201400392/abstract
Dynamics of productivity in higher education: cross-european evidence based on bootstrapped Malmquist indices
Dynamics of Productivity in Higher Education - Cross-European Evidence Based on Bootstrapped Malmquist Indices
How does diet influence the reproductive seasonality of tropical freshwater fish?: A case study of a characin in a tropical mountain river
Seasonal breeding of tropical freshwater fish may be synchronized with periods of high food consumption. We explored this hypothesis by studying the relationship between diet and reproductive activity of Creagrutus guanes (Teleostei, Characidae). Our results showed that C. guanes had a generalist and omnivorous diet dominated by aquatic insects (mainly Diptera larvae) and seeds. Creagrutus guanes did not show intersexual or ontogenetic variation in diet. Peaks of feeding activity during rainy months were not synchronized with breeding in dry months. Our results do not support the hypothesis that the reproductive season has to be synchronized with high food consumption. We discussed the hypothesis fat reserves may be an important factor for the desynchronization of peaks of feeding and reproduction as explanation of seasonal breeding of this species