The Chinchilla Local Fauna: an exceptionally rich and well-preserved Pliocene vertebrate assemblage from fluviatile deposits of south-eastern Queensland, Australia

The Chinchilla Sand is a formally defined stratigraphic sequence of Pliocene fluviatile deposits that comprise interbedded clays, sands, and conglomerates located in the western Darling Downs, south-east Queensland, Australia. Vertebrate fossils from the deposits are referred to as the Chinchilla Local Fauna. Despite over a century and a half of collection and study, uncertainties concerning the taxa in the Chinchilla Local Fauna continue, largely from the absence of stratigraphically controlled excavations, lost or destroyed specimens, and poorly documented provenance data. Here we present a detailed and updated study of the vertebrate fauna from this site. The Pliocene vertebrate assemblage is represented by at least 63 taxa in 31 families. The Chinchilla Local Fauna is Australia’s largest, richest and best preserved Pliocene vertebrate locality, and is eminently suited for palaeoecological and palaeoenvironmental investigations of the late Pliocene.GJP acknowledges the support of an ARC Discovery Early Career Researcher Award (DE120101533). JL was supported by a UQ Postdoctoral Fellowship and a UQ Early Career Research Grant (2012003222)

First record of avian extinctions from the Late Pleistocene and Holocene of Timor Leste

Under embargo until: 2020-11-23Timor has yielded the earliest evidence for modern humans in Wallacea, but despite its long history of modern human occupation, there is little evidence for human-induced Late Pleistocene extinctions. Here, we report on Late Pleistocene and Holocene bird remains from Jerimalai and Matja Kuru 1, sites that have yielded extensive archaeological sequences dating back to >40 ka. Avian remains are present throughout the sequence, and quails (Phasianidae), buttonquails (Turnicidae) and pigeons (Columbidae) are the most abundant groups. Taphonomic analyses suggest that the majority of bird remains, with the exception of large-bodied pigeons, were accumulated by avian predators, likely the Barn owl Tyto sp. All species represent extant taxa that are still present on Timor today, with the exception of a crane, Grus sp., from the Late Pleistocene of Jerimalai, and a large buttonquail, Turnix sp., from Matja Kuru 1. The crane likely represents an extirpated population of cranes, which were much more widespread throughout the Indonesian archipelago during the Quaternary. The large buttonquail is present at Matja Kuru 1 alongside the extant T. maculosus until at least 1372–1300 cal BP. These two species represent the first records of avian extinctions on Timor. However, a causal relationship between the extinction of these two taxa and human impact cannot be demonstrated at this point.acceptedVersio

Micro-anatomical record of cortical bone remodeling and high vascularity in a fossil giant rat midshaft femur

Rat cortical bone does not typically undergo secondary (Haversian) remodeling. Haversian organization of rat bone has been mainly observed in experimental settings following biomechanical or dietary manipulation. Here, we report an observation of cortical secondary osteons within a histological femur cross-section from an extinct (late Quaternary) form of Timorese giant rat (Murinae gen. et sp. indet). The medio-lateral midshaft diameter of its femur, used as a measure of bone size, is 6.15 mm and indicates a heavier than normal skeletal frame. We compare this sample to bone histology in a small rat's midshaft femur of 2.33 mm diameter. A complete lack of Haversian bone remodeling characteristics is noted for the smaller sample, which is dominated by radial vascular canals. The giant rat shows clear secondary osteons and diffuse vascularity mainly composed of tightly packed longitudinal canals across its cortex. It appears that rat cortical bone can undergo bone remodeling, and is organized in a highly vascularized manner, in insular giant cases. Our findings from Timor align with results reported in experimental rat model skeletal biology literature and other insular fossil rat material. Where macroanatomical examination is limited, histological observations on fossil rat limb bones have the potential to aid reconstructions of life history and skeletal growth aspects in these rodents. Anat Rec, 302:1934-1940, 2019.y. This research was possible thanks to OSP funds from the School of Archeology and Anthropology at the Australian National University (to Miszkiewicz), and the Australian Research Council (Future Fellowship Award FT160100450 to Louys; Laureate FL120100156 to O’Connor)

Least-cost pathway models indicate northern human dispersal from Sunda to Sahul

Archaeological records from Australia provide the earliest, indirect evidence for maritime crossings by early modern humans, as the islands to the north-west of the continent (Wallacea) have never been connected to the mainland. Suggested in 1977 by Joseph B. Birdsell, the two main routes from Sunda (mainland Southeast Asia) to Sahul (Australia-New Guinea), still in debate today, are a northern route through Sulawesi with a landing in New Guinea, or a southern route through Bali, Timor and thence landing in northern Australia. Here we construct least-cost pathway models of human dispersal from Sunda to Sahul at 65 ka and 70 ka by extending previous out-of-Africa least-cost models through the digitization of these routes. We recover overwhelming support for a northern route into Sahul, with a landing location on present-day Misool Island. Minimal support is also recovered for the southern route at 70 ka, with a possible crossing to Sahul from eastern Timor. Review of archaeological records on the Wallacean islands crossed by our northern route indicate a dearth of archaeological research in this region. Meanwhile, the comparatively better studied southern islands still lack any archaeological dates comparable to those known for initial occupation in Sunda and Sahul. Based on our model results we suggest Misool Island as the initial landing site for early modern humans on Sahul and recommend a future focus on archaeological fieldwork in the northern Wallacean islands.This research was funded by an Australian Research Council (ARC) Laureate Fellowship awarded to S.O. (FL120100156) and by the ARC Centre of Excellence for Australian Biodiversity and Heritage (CE170100015)

Cartesian coordinates in two-dimensional bone histology images

Palaeohistologists who work with well-preserved hominin cortical bone can examine two-dimensional (2D) histology images for quantitative parameters of secondary osteons and Haversian canals to reconstruct past bone remodelling. Standard techniques in this space include area measurements and counts of histology components recorded from an image. The ‘point-count’ technique involves counting all the items (e.g., secondary osteons, osteocyte lacunae) of interest per image area. The open access image analysis software ImageJ/ FIJI facilitates this technique in a user-friendly way. Raw data points are captured and can be saved in a spreadsheet. Aside from the total number of counts, the software also issues Cartesian (XY) coordinates locating each counted point. These XY coordinates are typically neglected within palaeohistological approaches due their assumed irrelevance to research questions of bone remodelling significance. We provide a short evaluation of XY coordinates captured by ImageJ/FIJI from 2D bone histology images, and a protocol for a simple calculation of XY distances that follow the path of point counting. We focus on osteocyte lacunae which serve as a proxy for osteoblast-osteocyte conversion in live bone by replicating the protocol on a bone sample from a Medieval English individual. We discuss the potential of XY coordinates for reconstructing the proximity of osteocyte lacunae and related bone remodelling activity through exchange of nutrients by neighbouring cells. We recommend palaeohistologists report XY coordinate data in their results to ensure better hominin palaeobiology characterisation

The Lives of Creatures Obscure, Misunderstood, and Wonderful: A Volume in Honour of Ken Aplin 1958-2019

Kenneth Peter Aplin (1958-2019) was one of Australia's leading vertebrate systematists, well known as an anatomist, mammalogist, herpetologist, palaeontologist, and archaeologist. Of all the many groups of animals that he studied, he was most passionate about the genus Rattus, among the most diverse and successful of all modern mammalian genera. Ken developed an unusually acute 'eye' for distinguishing taxa in vertebrate groups often considered very challenging to systematists, like Rattus. This skill was borne in part of extensive fieldwork, especially in New Guinea, Australia, and across Asia. This let him encounter many different groups of animals firsthand and to develop a remarkable ability for understanding them on their own ground. Where most mammalogists would bring rat traps, Ken would bring a shovel, and he would get to work in the landscape around him, digging burrows out of the ground to uncover rats that the trapper rarely sees. Of course, his careful work as a systematist and anatomist also sprang from a career spent within the world of natural history museums and their collections, the primary resource that biodiversity scientists use to develop their skills and undertake their work. From his earliest days as a scientist, he also showed an abiding interest in archaeology, and the study of faunal remains in archaeological contexts was a major strand that wove across his career. In this volume, the Australian Museum celebrates the career of an extraordinary fieldworker and museum scientist who made enormous contributions to the study of Asia-Pacific biodiversity, present and past

Shape does matter: A geometric morphometric approach to shape variation in Indo-Pacific fish vertebrae for habitat identification

Traditional fish vertebrae identification relies on the availability of comprehensive reference collections that include every element from the neural spine for each taxon. In regions with great taxonomic diversity, such as the Indo-Pacific, the identification of fish vertebrae to species is difficult. This results in taxonomic lists with many skeletal elements identified only to family. However family level identifications often tell us little about the environmental preferences of the fish and thus, by inference, human fishing practices. Here we apply geometric morphometrics (GM) to examine shape variations within vertebrae in modern specimens of a variety of pelagic and reef species to determine if this method can be used to reliably inform on habitat preferences. Digitized vertebral elements of reef (Acanthuridae, Balistidae, Labridae, Lethrinidae, Lutjanidae and Serranidae) and pelagic/open water (Scombridae and Carangidae) families were scored using 2D landmarks. These were subjected to Generalized Procrustes Analysis and discriminatory multivariate analyses (Linear Discriminant Analysis and Discriminant Function Analysis) in order to assess whether shape can be used to differentiate habitats. Our results suggest that geometric morphometrics do allow the differentiation of habitat in vertebrae and provide an alternative method for the classification of archaeological fish assemblages. These analyses were applied to a sample of archaeological fish remains from a site in Alor Island (Nusa Tenggara Timur, Indonesia) and compared with the results of an earlier traditional comparative icthyoarchaeological analysis. We found that the main component of the Pleistocene marine human diet comprised reef species, with the sporadic addition of open water species, supporting the pattern recorded with traditional analyses. This methodology could be widely applied to archaeological fish material from across the Indo-Pacific allowing a greater number of bones in assemblages to contribute to insights into human exploitation of coastal habitats and fishing techniques over time.Project was funded by the Australian Research Council (ARC) grant FL120100156 to O'Connor. The Indonesia government granted the permission (RISTEK Foreign Research Permit (O'Connor1304)/FRP/SM/V/2014) to do our research

Hominin Dispersal and Settlement East of the Huxley's Line: The role of sea level changes, island size, and subsistence behaviour

The thousands of islands east of Huxley’s Line have never formed a single land mass or been connected to Sunda or Sahul. The earliest records of hominins in this area are stone tools recovered from Pleistocene deposits on Flores and Sulawesi. Subsistence by these hominins as well as the later subsistence patterns exhibited by Homo floresiensis suggest that exploitation of marine resources was, at best, rare and opportunistic. Likewise, the fragmentary hominin remains recovered from Late Pleistocene deposits from Callao Cave in the Philippines exploited large game at the expense of marine resources. In contrast, the earliest zooarchaeological records of modern humans are dominated by marine fish and shellfish and include the earliest evidence of pelagic fishing using shell tools, implying complex fish-capture technology. Pleistocene lithic assemblages on these islands are unspecialized, indicating reduction of predominantly locally available stone to produce flakes and irregularly retouched pieces. By the terminal Pleistocene, records of human subsistence on very small islands indicate almost total reliance on marine foods for protein. We propose that strong links exist between subsistence strategies and dispersal throughout Wallacea, with subsistence strategies available to pre-sapiens hominins in the region being a major limiting factor in their dispersal

Neolithic dispersal implications of murids from late Holocene archaeological and modern natural deposits in the Talaud Islands, northern Sulawesi

The Sangihe-Talaud Archipelago represents a group of 77 remote islands located between the Philippines and North Sulawesi, in the northern sector of Wallacea. The Talaud Islands have a rich and significant archaeological record going back to the Pleistocene and are instrumental in understanding Pleistocene colonisation of small islands and later models of Austronesian language dispersal. Here we report on vertebrate material excavated from Leang Mande'et, a late Holocene rockshelter on Karakelang, the main island in the Talaud group. The site represents a periodically occupied shelter used for gardening. Fauna recovered predominately comprises murid elements, with at least four taxa (Rattus rattus, Rattus exulans and two Melomys species) found. The rodents show clear signs of being deposited by raptors rather than humans, unlike the small number of fish remains also recovered. DNA sequences from several Rattus rattus specimens are referrable to Rattus rattus complex lineage IV, a lineage with a southern Indochinese origins and broad modern representation through Indonesia and the Philippines. The lack of any Rattus rattus complex lineage II from Leang Mande’et suggests that the first agricultural inhabitants of this island did not come from Taiwan or northern Indochina, but rather that they either originated from the south or that, once established in the Talauds, opened up significant trade networks to the south and in the process acquired a significant pest

Fishing in life and death: Pleistocene fish-hooks from a burial context on Alor Island, Indonesia

Fish-hooks discovered among grave goods associated with an adult female burial at the Tron Bon Lei rockshelter on the island of Alor in Indonesia are the first of their kind from a Pleistocene mortuary context in Southeast Asia. Many of the hooks are of a circular rotating design. Parallels found in various other prehistoric contexts around the globe indicate widespread cultural convergence. The association of the fish-hooks with a human burial, combined with the lack of alternative protein sources on the island, suggest that fishing was an important part of the cosmology of this community. The Tron Bon Lei burial represents the earliest-known example of a culture for whom fishing was clearly an important activity among both the living and the dead.An ARC Laureate to O’Connor (FL120100156) funded the research, which was conducted under an Indonesian Foreign Research Permit (O’Connor 1304/FRP/SM/V/2014)