Description and Dynamics of 50-Day Oscillations in the Western Tropical Region of the CME Model

The WOCE Community Modelling Effort (CME) general circulation model of the north Atlantic was used to investigate the behavior, nature and dynamics of 50-day oscillations seen in the meridional component of velocity between 35° and 55°W and between 5° and 11°N. Validation studies showed that the model reproduced the surface circulation in this area with a reasonable degree of accuracy, in particular, the characteristic seasonal variability. From June to December, the North Brazil Current (NBC) retroflects to form the western arm of the North Equatorial Countercurrent (NECC). Associated with the NECC is a standing meander pattern which extends from the retroflection region (50°W, 7°N) into the interior of the basin (35\sp\circW, 5\sp\circN), and has a wavelength of about 800 km. This meander pattern starts to break down in December and concurrently, oscillations of the meridional component of velocity appear with a period of about 50 days. They appear first near 35°W, and are advected westward. They have a westward phase velocity of 0.1 m s-1, wavelength of about 500 km and a very slow eastward group velocity. Their period, phase speed and wavelength agree with observations (Johns et al. 1990). Calculation of the leading balance of terms from the full vorticity equation following a modal decomposition in the propagation region, showed that the oscillations were first and second mode baroclinic Rossby waves. Repetition of the vorticity analysis during the period of the retroflection revealed the NECC meanders also to be first and second mode baroclinic Rossby waves; the same as the 50-day oscillations. These findings, together with the time evolution of the individual flow components over an annual cycle, suggested that the 50-day oscillations were the westward advected residue of the NECC meander pattern that is released as the NECC slows in fall. The retroflecting NBC produces Rossby waves with very slow eastward group velocity that are advected eastward until they reach 35°W, where they dissipate. A standing wave pattern is established for several months, while the NECC is active. Once it slows, the waves retreat westward and disappear totally by May. Wind forcing was not considered to be responsible for the oscillations in this model

Observations of a Cyclonic Ring: Gulf Stream Coalescence Event over the Blake Plateau

Hydrographic data collected in September 1980 over the Blake Plateau were analyzed using a combination of empirical search and inverse techniques. Five sections, extending from the continental shelf break eastward across the Blake Plateau, were positioned at approximately 1-degrees intervals between 28-degrees and 32-degrees-N. The empirical search procedure was applied to four closed regions (boxes), constructed from adjacent sections, where each region was assumed to consist of two conservative layers. Five geostrophic velocity sections were obtained using the average optimum reference level for the four boxes. The inverse technique provided barotropic correction velocities that caused all layers to conserve mass. The sections and the resulting transport streamline fields revealed the presence of a cyclonic feature whose meridional and zonal extent was about 200 km in both directions. This feature was shown to be a coalescing Gulf Stream ring in a late stage of decay. Water mass analyses, current meter data, and earlier studies were used to support this hypothesis. The cyclonic advection of Gulf Stream water around the ring formed a meander in the eastern Gulf Stream wall. Topography appeared to be affecting this flow, suggesting that other rings entering the region would be similarly influenced. Evidence of recurring rings at or near this location and hence, meanders of the eastern Gulf Stream wall, was found in hydrographic data collected by NOAA over a 12-month period from 1965 to 1966. These data suggested that two such events, lasting about 4 weeks each, occurred during this period. The frequency of these events was in agreement with earlier findings, while the duration of these events was supported by current meter observations

Description and Vorticity Analysis of 50-Day Oscillations in the Western Tropical Region of the CME Model

The WOCE Community Modeling Effort (CME) general circulation model of the North Atlantic was used to investigate the behavior, nature, and dynamics of 50-day oscillations seen in the meridional component of velocity between 5 degrees and 11 degrees N, 35 degrees and 55 degrees W. Oscillations of the meridional component of velocity, with a period of about 50 days, appear as the seasonal meander pattern of the North Equatorial Countercurrent starts to break down in December. They appear first near 35 degrees W and are advected westward. They have a westward phase velocity of about 0.1 m s(-1), wavelength of about 600 km, and a very slow eastward group velocity. Their period, phase speed, and wavelength agree with recent observations. Calculation of the leading terms from the full vorticity equation following a modal decomposition in the propagation region showed that the oscillations were first and second mode baroclinic Rossby waves. Repetition of the vorticity analysis on an undecomposed snapshot during the period of the retroflection revealed the NECC meanders also to be baroclinic Rossby waves, the same as the 50-day oscillations. These findings, together with the time evolution of the individual flow components over an annual cycle, suggested that the 50-day oscillations were the westward advected residue of the NECC meander pattern that is released as the NECC slows in December. The retroflecting North Brazil Current produces Rossby waves with very slow eastward group velocity that are advected eastward by the NECC until they reach 35 degrees W, where they dissipate. A standing wave pattern is established for several months, while the NECC is active. Once it slows, the waves are advected westward and disappear totally by May. Neither wind forcing nor barotropic instability were considered to be responsible for the oscillations in the model

Structure and evolution of the cold dome off northeastern Taiwan : a numerical study

Author Posting. © The Oceanography Society, 2013. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 26, no. 1 (2013): 66–79, doi:10.5670/oceanog.2013.06.Numerous observational and modeling studies of ocean circulation surrounding Taiwan have reported occurrences of cold water and doming of isotherms (called the cold dome) that result in the formation of coastal upwelling on the northeastern Taiwan shelf. We use a high-resolution (1/24°) ocean model based on the Massachusetts Institute of Technology general circulation model to study the evolution of this distinct shelf-slope circulation phenomenon. We performed a number of model simulations spanning a five-year period (2004–2008) using realistic atmospheric forcing and initial and open boundary conditions. The model solutions were compared with satellite measurements of sea surface height (SSH), sea surface temperature (SST), and historical temperature and salinity observations. The model showed a realistically shaped cold dome with a diameter of ~ 100 km and temperature of ~ 3°C below the ambient shelf waters at 50 m depth. The occurrences of simulated cold dome events appeared to be connected with the seasonal variability of the Kuroshio Current. The model simulations showed more upwelling events during spring and summer when the core of the Kuroshio tends to migrate away from the east coast of Taiwan, compared to fall and winter when the core of the Kuroshio is generally found closer to the east coast of Taiwan. The model also reproduced weak cyclonic circulation associated with the upwelling off northeastern Taiwan. We analyzed the spatio-temporal variability of the cold dome using the model solution as a proxy and designed a "cold dome index" based on the temperature at 50 m depth averaged over a 0.5° × 0.5° box centered at 25.5°N, 122°E. The cold dome index correlates with temperature at 50 m depth in a larger region, suggesting the spatial extent of the cold dome phenomenon. The index had correlation maxima of 0.78 and 0.40 for simulated SSH and SST, respectively, in and around the cold dome box region, and we hypothesize that it is a useful indicator of upwelling off northeastern Taiwan. In addition, both correlation and composite analysis between the temperature at 50 m depth and the East Taiwan Channel transport showed no cold dome events during low-transport events (often in winter) and more frequent cold dome events during high-transport events (often in summer). The simulated cold dome events had time scales of about two weeks, and their centers aligned roughly along a northeastward line starting from the northeastern tip of Taiwan.This work was supported by Office of Naval Research grant N00014-08- 1-0587

Towards the Use of POP in a Global Coupled Navy Prediction System

LONG-TERM GOALS: Development of a global high resolution coupled atmosphere/ocean/ice model that assimilates data providing initial conditions from which forecasts are performed. Additionally, very high-resolution regional air/ocean coupled models will be nested into the global system at key strategic locations.Award Number: N0001401WR2015

Effects of eddy vorticity forcing on the mean state of the Kuroshio Extension

Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1356–1375, doi:10.1175/JPO-D-13-0259.1.Eddy–mean flow interactions along the Kuroshio Extension (KE) jet are investigated using a vorticity budget of a high-resolution ocean model simulation, averaged over a 13-yr period. The simulation explicitly resolves mesoscale eddies in the KE and is forced with air–sea fluxes representing the years 1995–2007. A mean-eddy decomposition in a jet-following coordinate system removes the variability of the jet path from the eddy components of velocity; thus, eddy kinetic energy in the jet reference frame is substantially lower than in geographic coordinates and exhibits a cross-jet asymmetry that is consistent with the baroclinic instability criterion of the long-term mean field. The vorticity budget is computed in both geographic (i.e., Eulerian) and jet reference frames; the jet frame budget reveals several patterns of eddy forcing that are largely attributed to varicose modes of variability. Eddies tend to diffuse the relative vorticity minima/maxima that flank the jet, removing momentum from the fast-moving jet core and reinforcing the quasi-permanent meridional meanders in the mean jet. A pattern associated with the vertical stretching of relative vorticity in eddies indicates a deceleration (acceleration) of the jet coincident with northward (southward) quasi-permanent meanders. Eddy relative vorticity advection outside of the eastward jet core is balanced mostly by vertical stretching of the mean flow, which through baroclinic adjustment helps to drive the flanking recirculation gyres. The jet frame vorticity budget presents a well-defined picture of eddy activity, illustrating along-jet variations in eddy–mean flow interaction that may have implications for the jet’s dynamics and cross-frontal tracer fluxes.A. S. Delman (ASD) and J. L. McClean (JLM) were supported by NSF Grant OCE-0850463 and Office of Science (BER), U.S. Department of Energy, Grant DE-FG02-05ER64119. ASD and J. Sprintall were also supported by a NASA Earth and Space Science Fellowship (NESSF), Grant NNX13AM93H. JLM was also supported by U.S. DOE Office of Science grant entitled “Ultra-High Resolution Global Climate Simulation” via a Los Alamos National Laboratory subcontract. S. R. Jayne was supported by NSF Grant OCE-0849808. Computational resources for the model run were provided by NSF Resource Grants TG-OCE110013 and TG-OCE130010.2015-11-0

Assessing the efficacy of active learning to support student performance across undergraduate programmes in Biomedical Science

Introduction: Active learning is a useful tool to enhance student engagement and support learning in diverse educational situations. We aimed to assess the efficacy of an active learning approach within a large interprofessional first year Medical Cell Biology module taken by six healthcare programmes across the School of Biomedical Sciences at Ulster University, United Kingdom. Materials and methods: An active learning approach was developed for weekly formative assessment using Smartwork to design a weekly interactive multiple-choice quiz to reinforce key concepts specifically for each lecture. We tracked and assessed student performance in the module overall and in each element of course work and exam for 2 years prior to and following the introduction of an active learning strategy to engage and support learning for students from all academic backgrounds and abilities. Results: Full engagement with active learning was significantly associated with an increased overall module performance as well as a significantly increased performance in each element of class test (No engagement vs. Full engagement, p &lt; 0.001), exam (No Engagement vs. Full engagement, p &lt; 0.05) and coursework (No engagement vs. Full engagement, p &lt; 0.001) within this overall total (No Engagement vs. Full engagement, p &lt; 0.01). Partial engagement with active learning was associated significantly improved class test (No engagement vs. partially engaged, p &lt; 0.001) and coursework (No engagement vs. partially engaged, p &lt; 0.05) performance. While a trend toward increased performance in exam and overall module mark was observed, these were not significant. Discussion: Active learning is a useful tool to support student learning across a range of healthcare programmes taken by students with differing backgrounds and academic abilities in an interprofessional and widening participation setting. Student engagement in active learning was highlighted as a key contributory factor to enhanced student performance in all aspects of assessment.</p

Will high-resolution global ocean models benefit coupled predictions on short-range to climate timescales?

As the importance of the ocean in the weather and climate system is increasingly recognised, operational systems are now moving towards coupled prediction not only for seasonal to climate timescales but also for short-range forecasts. A three-way tension exists between the allocation of computing resources to refine model resolution, the expansion of model complexity/capability, and the increase of ensemble size. Here we review evidence for the benefits of increased ocean resolution in global coupled models, where the ocean component explicitly represents transient mesoscale eddies and narrow boundary currents. We consider lessons learned from forced ocean/sea-ice simulations; from studies concerning the SST resolution required to impact atmospheric simulations; and from coupled predictions. Impacts of the mesoscale ocean in western boundary current regions on the large-scale atmospheric state have been identified. Understanding of air-sea feedback in western boundary currents is modifying our view of the dynamics in these key regions. It remains unclear whether variability associated with open ocean mesoscale eddies is equally important to the large-scale atmospheric state. We include a discussion of what processes can presently be parameterised in coupled models with coarse resolution non-eddying ocean models, and where parameterizations may fall short. We discuss the benefits of resolution and identify gaps in the current literature that leave important questions unanswered

Circulation and intrusions northeast of Taiwan : chasing and predicting uncertainty in the cold dome

Author Posting. © The Oceanography Society, 2011. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 24 no. 4 (2011): 110–121, doi:10.5670/oceanog.2011.99.An important element of present oceanographic research is the assessment and quantification of uncertainty. These studies are challenging in the coastal ocean due to the wide variety of physical processes occurring on a broad range of spatial and temporal scales. In order to assess new methods for quantifying and predicting uncertainty, a joint Taiwan-US field program was undertaken in August/September 2009 to compare model forecasts of uncertainties in ocean circulation and acoustic propagation, with high-resolution in situ observations. The geographical setting was the continental shelf and slope northeast of Taiwan, where a feature called the "cold dome" frequently forms. Even though it is hypothesized that Kuroshio subsurface intrusions are the water sources for the cold dome, the dome's dynamics are highly uncertain, involving multiple scales and many interacting ocean features. During the experiment, a combination of near-surface and profiling drifters, broad-scale and high-resolution hydrography, mooring arrays, remote sensing, and regional ocean model forecasts of fields and uncertainties were used to assess mean fields and uncertainties in the region. River runoff from Typhoon Morakot, which hit Taiwan August 7–8, 2009, strongly affected shelf stratification. In addition to the river runoff, a cold cyclonic eddy advected into the region north of the Kuroshio, resulting in a cold dome formation event. Uncertainty forecasts were successfully employed to guide the hydrographic sampling plans. Measurements and forecasts also shed light on the evolution of cold dome waters, including the frequency of eddy shedding to the north-northeast, and interactions with the Kuroshio and tides. For the first time in such a complex region, comparisons between uncertainty forecasts and the model skill at measurement locations validated uncertainty forecasts. To complement the real-time model simulations, historical simulations with another model show that large Kuroshio intrusions were associated with low sea surface height anomalies east of Taiwan, suggesting that there may be some degree of predictability for Kuroshio intrusions.We thank the National Science Council of Taiwan as well as the Office of Naval Research for generous support of this effort

The DOE E3SM Coupled Model Version 1: Overview and Evaluation at Standard Resolution

This work documents the first version of the U.S. Department of Energy (DOE) new Energy Exascale Earth System Model (E3SMv1). We focus on the standard resolution of the fully coupled physical model designed to address DOE mission-relevant water cycle questions. Its components include atmosphere and land (110-km grid spacing), ocean and sea ice (60 km in the midlatitudes and 30 km at the equator and poles), and river transport (55 km) models. This base configuration will also serve as a foundation for additional configurations exploring higher horizontal resolution as well as augmented capabilities in the form of biogeochemistry and cryosphere configurations. The performance of E3SMv1 is evaluated by means of a standard set of Coupled Model Intercomparison Project Phase 6 (CMIP6) Diagnosis, Evaluation, and Characterization of Klima simulations consisting of a long preindustrial control, historical simulations (ensembles of fully coupled and prescribed SSTs) as well as idealized CO2 forcing simulations. The model performs well overall with biases typical of other CMIP-class models, although the simulated Atlantic Meridional Overturning Circulation is weaker than many CMIP-class models. While the E3SMv1 historical ensemble captures the bulk of the observed warming between preindustrial (1850) and present day, the trajectory of the warming diverges from observations in the second half of the twentieth century with a period of delayed warming followed by an excessive warming trend. Using a two-layer energy balance model, we attribute this divergence to the model’s strong aerosol-related effective radiative forcing (ERFari+aci = -1.65 W/m2) and high equilibrium climate sensitivity (ECS = 5.3 K).Plain Language SummaryThe U.S. Department of Energy funded the development of a new state-of-the-art Earth system model for research and applications relevant to its mission. The Energy Exascale Earth System Model version 1 (E3SMv1) consists of five interacting components for the global atmosphere, land surface, ocean, sea ice, and rivers. Three of these components (ocean, sea ice, and river) are new and have not been coupled into an Earth system model previously. The atmosphere and land surface components were created by extending existing components part of the Community Earth System Model, Version 1. E3SMv1’s capabilities are demonstrated by performing a set of standardized simulation experiments described by the Coupled Model Intercomparison Project Phase 6 (CMIP6) Diagnosis, Evaluation, and Characterization of Klima protocol at standard horizontal spatial resolution of approximately 1° latitude and longitude. The model reproduces global and regional climate features well compared to observations. Simulated warming between 1850 and 2015 matches observations, but the model is too cold by about 0.5 °C between 1960 and 1990 and later warms at a rate greater than observed. A thermodynamic analysis of the model’s response to greenhouse gas and aerosol radiative affects may explain the reasons for the discrepancy.Key PointsThis work documents E3SMv1, the first version of the U.S. DOE Energy Exascale Earth System ModelThe performance of E3SMv1 is documented with a set of standard CMIP6 DECK and historical simulations comprising nearly 3,000 yearsE3SMv1 has a high equilibrium climate sensitivity (5.3 K) and strong aerosol-related effective radiative forcing (-1.65 W/m2)Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/151288/1/jame20860_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/151288/2/jame20860.pd