Plant species colonization in newly created road habitats of South Korea: insights for more effective restoration

Despite the advances in restoration methods for newly created road habitats such as roadcuts and embankments, implementation in different parts of the world is limited by high cost and lack of knowledge of naturally formed plant communities. However, a cheaper alternative is to relay in natural successional process in sites under optimal conditions. Thus, the first steps should focus on identifying plant species that colonize roadways and road habitats as well as optimal colonization sites. Our study aimed to describe species composition, exotic species presence, and diversity among four roadways (Jeongok-Youngjung, JG; Seolma-Gueup, SM; Singal, SG; and Samga-Daechon, DC) and three habitat types (embankments, plain areas, and roadcuts) in South Korean peninsula. The effect of some environmental factors on plant composition was also examined (soil type, soil slope, and surrounding landscape). Our results showed that established plant species composition was influenced by the interaction between roadways and habitats types, which was also the main interaction affecting plant richness and evenness. Surprisingly, environmental variables had no effect on plant species composition, with a residual amount of explained variation. A total of 48 plant species were described as indicator of different roadways and habitat types, and 50% of them were invasive or cultivated species. It appeared that different regional-dependent processes, such as northern vs. southern roadways, interact with local process in new-road habitats, producing complex patterns of plant species colonization and composition. Thus, ecological restoration solutions should be targeted at site-specific needs (local) while taking into consideration the differences between northern and southern roadways (regional). Here, regional-pool and local-constraints interaction controls plant composition and diversity during road construction in South Korea. Finally, new restoration actions should be based on plant species that have been established spontaneously in these degraded areas.This work was supported by a grant from the National Institute of Ecology (NIE), funded by the Ministry of Environment (MOE), Republic of Korea (NIE-C-2018-04). JGA was supported by a Ramón y Cajal fellowship of the Ministry of Economy, Industry and Competitiveness, Spain (RYC-2016-20528)

Identification of restoration species for early roadcut slope regeneration using functional group approach

Current restoration protocols for roadside cut slopes in South Korea involve hydroseeding with exotic species to achieve early greening and soil stabilization. However, exotic species can negatively affect adjacent native ecosystems. This study investigated the functional traits of early colonizers in slope restoration and surrounding environments to inform restoration methods that generate similar communities as those of native ecosystems. Slope vegetation (species density, species cover, upperstory species, canopy cover) and environment (aspect, angle, soil properties) were surveyed from the road edge to the forest boundary, and were classified as three distinct zones: a hydroseeded slope, a transition zone, and the forest edge. Naturally occurring species were classified into functional groups to examine dominant traits during early colonization. Hemicryptophyte or geophyte forest species and forest interior woody species were well established and dominant in transition zones and cut slopes. Potential native species for slope restoration can be identified by examining functional group species in the adjacent forest. These native species can achieve restoration goals and block invasive species in the same functional group. Festuca arundinacea (tall fescue), which is reported as an invasive alien species, rapidly spread after introduction for restoration. Thus, continuous monitoring for impact on native communities is required after sowing invasive alien species. Future slope restoration should consider native woody species and perennial forest sedge species that develop rhizomes, and reconsider the use of tall fescue. This study indicates that cut slopes can be appropriately managed to enhance the quality of habitats for native species.N

Identifying high-priority conservation areas for endangered waterbirds using a flagship species in the Korean DMZ

The Hangang River and Imjingang River estuaries in Korea are part of the main transit route for many migratory birds that use the East Asia-Pacific flyway. Despite the global importance of this area as a seasonal bird stopover site and resting area, conservation areas have not been established in this area based on ecological properties. This study aimed to examine the umbrella effect of the white-naped crane (Antigone vipio), which is one of the best-known flagship species in East Asia, and to determine the effectiveness of establishing a conservation plan in the western DMZ based on the distribution of white-naped cranes. Species distribution modeling was performed for the white-naped crane; other threatened waterbirds wintering in the western DMZ; Group 1, including species with ecological traits similar to those of the white-naped crane; and Group 2, including species with ecological traits different from those of the white-naped crane. The modeling was based on field survey data from a citizen science project, and a systematic conservation planning approach was adopted for each species group. The results showed no significant differences between the plan for the target species and the plans for the other species groups, indicating that protecting white-naped cranes habitat can also protect the habitat of other threatened waterbirds.N

Long-Term Land Cover Changes in the Western Part of the Korean Demilitarized Zone

After the Korean War, human access to the Korean Demilitarized Zone (DMZ) was highly restricted. However, limited agricultural activity was allowed in the Civilian Control Zone (CCZ) surrounding the DMZ. In this study, land cover and vegetation changes in the western DMZ and CCZ from 1919 to 2017 were investigated. Coniferous forests were nearly completely destroyed during the war and were then converted to deciduous forests by ecological succession. Plains in the DMZ and CCZ areas showed different patterns of land cover changes. In the DMZ, pre-war rice paddies were gradually transformed into grasslands. These grasslands have not returned to forest, and this may be explained by wildfires set for military purposes or hydrological fluctuations in floodplains. Grasslands near the floodplains in the DMZ are highly valued for conservation as a rare land type. Most grasslands in the CCZ were converted back to rice paddies, consistent with their previous use. After the 1990s, ginseng cultivation in the CCZ increased. In addition, the landscape changes in the Korean DMZ and CCZ were affected by political circumstances between South and North Korea. Our results provide baseline information for the development of ecosystem management and conservation plans for the Korean DMZ and CCZ. Given the high biodiversity and ecological integrity of the Korean DMZ region, transboundary governance for conservation should be designed.Y

Formyl-methionine as an N-degron of a eukaryotic N-end rule pathway

In bacteria, nascent proteins bear the pretranslationally generated N-terminal (Nt) formyl-methionine (fMet) residue. Nt-fMet of bacterial proteins is a degradation signal, termed fMet/N-degron. In contrast, proteins synthesized by cytosolic ribosomes of eukaryotes were presumed to bear unformylated Nt-Met. Here we found that the yeast formyltransferase Fmt1, although imported into mitochondria, could also produce Nt-formylated proteins in the cytosol. Nt-formylated proteins were strongly up-regulated in stationary phase or upon starvation for specific amino acids. This up-regulation strictly required the Gcn2 kinase, which phosphorylates Fmt1 and mediates its retention in the cytosol. We also found that the Nt-fMet residues of Nt-formylated proteins act as fMet/N-degrons, and identified the Psh1 ubiquitin ligase as the recognition component of this eukaryotic fMet/N-end rule pathway, which destroys Nt-formylated proteins

Formyl-methionine as an N-degron of a eukaryotic N-end rule pathway

In bacteria, nascent proteins bear the pretranslationally generated N-terminal (Nt) formyl-methionine (fMet) residue. Nt-fMet of bacterial proteins is a degradation signal, termed fMet/N-degron. In contrast, proteins synthesized by cytosolic ribosomes of eukaryotes were presumed to bear unformylated Nt-Met. Here we found that the yeast formyltransferase Fmt1, although imported into mitochondria, could also produce Nt-formylated proteins in the cytosol. Nt-formylated proteins were strongly up-regulated in stationary phase or upon starvation for specific amino acids. This up-regulation strictly required the Gcn2 kinase, which phosphorylates Fmt1 and mediates its retention in the cytosol. We also found that the Nt-fMet residues of Nt-formylated proteins act as fMet/N-degrons, and identified the Psh1 ubiquitin ligase as the recognition component of this eukaryotic fMet/N-end rule pathway, which destroys Nt-formylated proteins

Naa12 compensates for Naa10 in mice in the amino-terminal acetylation pathway

Amino-terminal acetylation is catalyzed by a set of N-terminal acetyltransferases (NATs). The NatA complex (including X-linked Naa10 and Naa15) is the major acetyltransferase, with 40-50% of all mammalian proteins being potential substrates. However, the overall role of amino-terminal acetylation on a whole-organism level is poorly understood, particularly in mammals. Male mice lacking Naa10 show no globally apparent in vivo amino-terminal acetylation impairment and do not exhibit complete embryonic lethality. Rather Naa10 nulls display increased neonatal lethality, and the majority of surviving undersized mutants exhibit a combination of hydrocephaly, cardiac defects, homeotic anterior transformation, piebaldism, and urogenital anomalies. Naa12 is a previously unannotated Naa10-like paralog with NAT activity that genetically compensates for Naa10. Mice deficient for Naa12 have no apparent phenotype, whereas mice deficient for Naa10 and Naa12 display embryonic lethality. The discovery of Naa12 adds to the currently known machinery involved in amino-terminal acetylation in mice

Naa12 compensates for Naa10 in mice in the amino-terminal acetylation pathway.

Amino-terminal acetylation is catalyzed by a set of N-terminal acetyltransferases (NATs). The NatA complex (including X-linked Naa10 and Naa15) is the major acetyltransferase, with 40-50% of all mammalian proteins being potential substrates. However, the overall role of amino-terminal acetylation on a whole-organism level is poorly understood, particularly in mammals. Male mice lacking Naa10 show no globally apparent in vivo amino-terminal acetylation impairment and do not exhibit complete embryonic lethality. Rather Naa10 nulls display increased neonatal lethality, and the majority of surviving undersized mutants exhibit a combination of hydrocephaly, cardiac defects, homeotic anterior transformation, piebaldism and urogenital anomalies. Naa12 is a previously unannotated Naa10-like paralogue with NAT activity that genetically compensates for Naa10. Mice deficient for Naa12 have no apparent phenotype, whereas mice deficient for Naa10 and Naa12 display embryonic lethality. The discovery of Naa12 adds to the currently known machinery involved in amino-terminal acetylation in mice

Identification of restoration species for early roadcut slope regeneration using functional group approach

Current restoration protocols for roadside cut slopes in South Korea involve hydroseeding with exotic species to achieve early greening and soil stabilization. However, exotic species can negatively affect adjacent native ecosystems. This study investigated the functional traits of early colonizers in slope restoration and surrounding environments to inform restoration methods that generate similar communities as those of native ecosystems. Slope vegetation (species density, species cover, upperstory species, canopy cover) and environment (aspect, angle, soil properties) were surveyed from the road edge to the forest boundary, and were classified as three distinct zones: a hydroseeded slope, a transition zone, and the forest edge. Naturally occurring species were classified into functional groups to examine dominant traits during early colonization. Hemicryptophyte or geophyte forest species and forest interior woody species were well established and dominant in transition zones and cut slopes. Potential native species for slope restoration can be identified by examining functional group species in the adjacent forest. These native species can achieve restoration goals and block invasive species in the same functional group. Festuca arundinacea (tall fescue), which is reported as an invasive alien species, rapidly spread after introduction for restoration. Thus, continuous monitoring for impact on native communities is required after sowing invasive alien species. Future slope restoration should consider native woody species and perennial forest sedge species that develop rhizomes, and reconsider the use of tall fescue. This study indicates that cut slopes can be appropriately managed to enhance the quality of habitats for native species.N