Deepwater and Other Sharks of the U.S. Atlantic Ocean Exclusive Economic Zone

Fifty-one deepwater and other shark species of the U.S. Exclusive Economic Zone in the Atlantic Ocean and Gulf of Mexico, which currently are not included in any Federal fishery management plan, are described, with a focus on primary distribution. Many of these shark species are not well known, while others which are more common may be of particular interest. Owing to concerns regarding possible increases in fishing effort for some of these species, as well as possible increases in bycatch rates as other fisheries move farther offshore, it is important that these sharks be considered in marine ecosystem management efforts. This will necessitate a better understanding of their biology and distribution. Primary distribution maps are included, based on geographic information system (GIS) analyses of both published and unpublished data, and a review of the literature. The most recent systematic classification and nomenclature for these species is used

From photons to big-data applications: terminating terabits

Computer architectures have entered a watershed as the quantity of network data generated by user applications exceeds the data-processing capacity of any individual computer end-system. It will become impossible to scale existing computer systems while a gap grows between the quantity of networked data and the capacity for per system data processing. Despite this, the growth in demand in both task variety and task complexity continues unabated. Networked computer systems provide a fertile environment in which new applications develop. As networked computer systems become akin to infrastructure, any limitation upon the growth in capacity and capabilities becomes an important constraint of concern to all computer users. Considering a networked computer system capable of processing terabits per second, as a benchmark for scalability, we critique the state of the art in commodity computing, and propose a wholesale reconsideration in the design of computer architectures and their attendant ecosystem. Our proposal seeks to reduce costs, save power and increase performance in a multi-scale approach that has potential application from nanoscale to data-centre-scale computers.This work was supported by the UK Engineering and Physical Sciences Research Council Internet Project EP/H040536/1. This work was supported by the Defense Advanced Research Projects Agency and the Air Force Research Laboratory, under contract FA8750-11-C-0249

Hiding in Plain Sight: Elopomorph Larvae Are Important Contributors to Fish Biodiversity in a Low-Latitude Oceanic Ecosystem

Leptocephalus larvae of elopomorph fishes are a cryptic component of fish diversity in nearshore and oceanic habitats. However, identifying those leptocephali can be important in illuminating species richness in a region. Since the Deepwater Horizon oil spill in 2010, sampling of offshore fishes in the epi-, meso-, and upper bathypelagic depth strata of the northern Gulf of Mexico resulted in 8989 identifiable specimens of leptocephalus larvae or transforming juveniles, in 118 taxa representing 83 recognized and established species and an additional 35 distinctive leptocephalus morphotypes not yet linked to a known described species. Leptocephali account for ∼13% of the total species richness of fishes collected in the offshore region. A new morphotype of Muraenidae leptocephalus is also described. We compare this study with other leptocephalus diversity studies in the western Atlantic

\u3ci\u3eGOPHERUS POLYPHEMUS\u3c/i\u3e (Gopher Tortoise) COYOTE PREDATION

Gopherus polyphemus is listed as a species of special concern by the state of Florida (Florida Wildlife Code Chap. 39 F.A.C.), and as a threatened species by the Florida Committee on Rare and Endangered Plants and Animals (Moler 1992. Rare and Endangered Biota of Florida: Volume 111, Reptiles and Amphibians. University Press of Florida, Gainesville, Florida. 291 pp.). Coyotes (Canis latrans) are invasive to Florida with ranges that are expanding within the state (Schmitz and Brown 1994. An Assessment of Invasive Non-Indigenous Species in Florida\u27s Public Lands. Florida Dept. Environmental Protection. Tallahassee, Florida. 283 pp.; Wooding and Hardinsky 1990. Florida Field Nat. 18:12-14), including the southeastern coast (Cunningham and Dunford 1970. Quart. J. Florida Acad. Sci. 33:279-280; Brady 1983. Florida Field Nat. 11:40-41; Hill et al. 1987. Wildl. Soc. Bull. 15:521-524; Wooding and Hardinsky, op. cit.). We report here evidence of Coyote predation on Gopher Tortoise hatchlings in southeastern coastal Florida

Two-sided estimates of minimum-error distinguishability of mixed quantum states via generalized Holevo-Curlander bounds

We prove a concise factor-of-2 estimate for the failure rate of optimally distinguishing an arbitrary ensemble of mixed quantum states, generalizing work of Holevo [Theor. Probab. Appl. 23, 411 (1978)] and Curlander [Ph.D. Thesis, MIT, 1979]. A modification to the minimal principle of Cocha and Poor [Proceedings of the 6th International Conference on Quantum Communication, Measurement, and Computing (Rinton, Princeton, NJ, 2003)] is used to derive a suboptimal measurement which has an error rate within a factor of 2 of the optimal by construction. This measurement is quadratically weighted and has appeared as the first iterate of a sequence of measurements proposed by Jezek et al. [Phys. Rev. A 65, 060301 (2002)]. Unlike the so-called pretty good measurement, it coincides with Holevo's asymptotically optimal measurement in the case of nonequiprobable pure states. A quadratically weighted version of the measurement bound by Barnum and Knill [J. Math. Phys. 43, 2097 (2002)] is proven. Bounds on the distinguishability of syndromes in the sense of Schumacher and Westmoreland [Phys. Rev. A 56, 131 (1997)] appear as a corollary. An appendix relates our bounds to the trace-Jensen inequality.Comment: It was not realized at the time of publication that the lower bound of Theorem 10 has a simple generalization using matrix monotonicity (See [J. Math. Phys. 50, 062102]). Furthermore, this generalization is a trivial variation of a previously-obtained bound of Ogawa and Nagaoka [IEEE Trans. Inf. Theory 45, 2486-2489 (1999)], which had been overlooked by the autho

Histological Examination in Obtaining a Diagnosis in Patients with Lymphadenopathy in Lima, Peru.

The differential diagnosis for lymphadenopathy is wide and clinical presentations overlap, making obtaining an accurate diagnosis challenging. We sought to characterize the clinical and radiological characteristics, histological findings, and diagnoses for a cohort of patients with lymphadenopathy of unknown etiology. 121 Peruvian adults with lymphadenopathy underwent lymph node biopsy for microbiological and histopathological evaluation. Mean patient age was 41 years (Interquartile Range 26-52), 56% were males, and 39% were HIV positive. Patients reported fever (31%), weight loss (23%), and headache (22%); HIV infection was associated with fever (P < 0.05) and gastrointestinal symptoms (P < 0.05). Abnormalities were reported in 40% of chest X-rays (N = 101). Physicians suspected TB in 92 patients (76%), lymphoma in 19 patients (16%), and other malignancy in seven patients (5.8%). Histological diagnoses (N = 117) included tuberculosis (34%), hyperplasia (27%), lymphoma (13%), and nonlymphoma malignancy (14%). Hyperplasia was more common (P < 0.001) and lymphoma less common (P = 0.005) among HIV-positive than HIV-negative patients. There was a trend toward reduced frequency of caseous necrosis in samples from HIV-positive than HIV-negative TB patients (67 versus 93%, P = 0.055). The spectrum of diagnoses was broad, and clinical and radiological features correlated poorly with diagnosis. On the basis of clinical features, physicians over-diagnosed TB, and under-diagnosed malignancy. Although this may not be inappropriate in resource-limited settings where TB is the most frequent easily treatable cause of lymphadenopathy, diagnostic delays can be detrimental to patients with malignancy. It is important that patients with lymphadenopathy undergo a full diagnostic work-up including sampling for histological evaluation to obtain an accurate diagnosis

Detecting Mutations in the Mycobacterium tuberculosis Pyrazinamidase Gene pncA to Improve Infection Control and Decrease Drug Resistance Rates in Human Immunodeficiency Virus Coinfection.

Hospital infection control measures are crucial to tuberculosis (TB) control strategies within settings caring for human immunodeficiency virus (HIV)-positive patients, as these patients are at heightened risk of developing TB. Pyrazinamide (PZA) is a potent drug that effectively sterilizes persistent Mycobacterium tuberculosis bacilli. However, PZA resistance associated with mutations in the nicotinamidase/pyrazinamidase coding gene, pncA, is increasing. A total of 794 patient isolates obtained from four sites in Lima, Peru, underwent spoligotyping and drug resistance testing. In one of these sites, the HIV unit of Hospital Dos de Mayo (HDM), an isolation ward for HIV/TB coinfected patients opened during the study as an infection control intervention: circulating genotypes and drug resistance pre- and postintervention were compared. All other sites cared for HIV-negative outpatients: genotypes and drug resistance rates from these sites were compared with those from HDM. HDM patients showed high concordance between multidrug resistance, PZA resistance according to the Wayne method, the two most common genotypes (spoligotype international type [SIT] 42 of the Latino American-Mediterranean (LAM)-9 clade and SIT 53 of the T1 clade), and the two most common pncA mutations (G145A and A403C). These associations were absent among community isolates. The infection control intervention was associated with 58-92% reductions in TB caused by SIT 42 or SIT 53 genotypes (odds ratio [OR] = 0.420, P = 0.003); multidrug-resistant TB (OR = 0.349, P < 0.001); and PZA-resistant TB (OR = 0.076, P < 0.001). In conclusion, pncA mutation typing, with resistance testing and spoligotyping, was useful in identifying a nosocomial TB outbreak and demonstrating its resolution after implementation of infection control measures

An assessment of sampling biases across studies of diel activity patterns in marine ray-finned fishes (Actinopterygii)

Author Posting. © University of Miami - Rosenstiel School of Marine and Atmospheric Science, 2016. This article is posted here by permission of University of Miami - Rosenstiel School of Marine and Atmospheric Science for personal use, not for redistribution. The definitive version was published in Bulletin of Marine Science 93 (2017): 611-639, doi:10.5343/bms.2016.1016.Understanding the promotion and regulation of circadian rhythms in marine fishes is important for studies spanning conservation, evolutionary biology, and physiology. Given numerous challenges inherent to quantifying behavioral activity across the full spectrum of marine environments and fish biodiversity, case studies offer a tractable means of gaining insights or forecasting broad patterns of diel activity. As these studies continue to accumulate, assessing whether, and to what extent, the cumulatively collected data are biased in terms of geography, habitat, or taxa represents a fundamentally important step in the development of a broad overview of circadian rhythms in marine fish. As such investigations require a phylogenetic framework, general trends in the phylogenetic sampling of marine fishes should be simultaneously assessed for biases in the sampling of taxa and trait data. Here, we compile diel activity data for more than 800 marine species from more than five decades of scientific studies to assess general patterns of bias. We found significant geographic biases that largely reflect a preference toward sampling warm tropical waters. Additionally, taxonomic biases likewise reflect a tendency toward conspicuous reef associated clades. Placing these data into a phylogenetic framework that includes all known marine fishes revealed significant under-dispersion of behavioral data and taxon sampling across the whole tree, with a few subclades exhibiting significant over-dispersion. In total, our study illuminates substantial gaps in our understanding of diel activity patterns and highlights significant sampling biases that have the potential to mislead evolutionary or ecological analyses.Partial funding was provided by the North Carolina Museum of Natural Sciences

Rationing tests for drug-resistant tuberculosis - who are we prepared to miss?

BACKGROUND: Early identification of patients with drug-resistant tuberculosis (DR-TB) increases the likelihood of treatment success and interrupts transmission. Resource-constrained settings use risk profiling to ration the use of drug susceptibility testing (DST). Nevertheless, no studies have yet quantified how many patients with DR-TB this strategy will miss. METHODS: A total of 1,545 subjects, who presented to Lima health centres with possible TB symptoms, completed a clinic-epidemiological questionnaire and provided sputum samples for TB culture and DST. The proportion of drug resistance in this population was calculated and the data was analysed to demonstrate the effect of rationing tests to patients with multidrug-resistant TB (MDR-TB) risk factors on the number of tests needed and corresponding proportion of missed patients with DR-TB. RESULTS: Overall, 147/1,545 (9.5%) subjects had culture-positive TB, of which 32 (21.8%) had DR-TB (MDR, 13.6%; isoniazid mono-resistant, 7.5%; rifampicin mono-resistant, 0.7%). A total of 553 subjects (35.8%) reported one or more MDR-TB risk factors; of these, 506 (91.5%; 95% CI, 88.9-93.7%) did not have TB, 32/553 (5.8%; 95% CI, 3.4-8.1%) had drug-susceptible TB, and only 15/553 (2.7%; 95% CI, 1.5-4.4%) had DR-TB. Rationing DST to those with an MDR-TB risk factor would have missed more than half of the DR-TB population (17/32, 53.2%; 95% CI, 34.7-70.9). CONCLUSIONS: Rationing DST based on known MDR-TB risk factors misses an unacceptable proportion of patients with drug-resistance in settings with ongoing DR-TB transmission. Investment in diagnostic services to allow universal DST for people with presumptive TB should be a high priority