Imaging three-dimensional rotational diffusion of plasmon resonant gold nanorods using polarization-sensitive optical coherence tomography

We demonstrate depth-resolved viscosity measurements within a single object using polarized optical scattering from ensembles of freely tumbling plasmon resonant gold nanorods (GNRs) monitored with polarization-sensitive optical coherence tomography. The rotational diffusion coefficient of the GNRs is shown to correlate with viscosity in molecular fluids according to the Stokes-Einstein relation. The plasmon resonant and highly anisotropic properties of GNRs are favorable for microrheological studies of nanoscale properties

Nature of the mixed-oxide interface in ceria-titania catalysts: Clusters, chains, and nanoparticles

The ceria-titania mixed metal oxide is an important component of catalysts active for the production of hydrogen through the water-gas shift reaction (CO + H2O → H2 + CO2) and the photocatalytic splitting of water (H2O + hv → H2 + 0.5O 2). We have found that ceria-titania catalysts prepared through wet chemical methods have a unique hierarchal architecture. Atomic resolution imaging by high-angle annular dark field scanning transmission electron microscopy (HAADF STEM) reveals that ceria supported on titania exhibits a range of morphologies. One can clearly identify ceria structures involving clusters, chains, and nanoparticles, which are distributed inhomogeneously on the titania support. These structures are often below the sensitivity limit of techniques such as X-ray diffraction (XRD), which in this case identifies the average particle size of the ceria and titania nanoparticles (via the Debye-Scherer equation) to be 7.5 and 36 nm, respectively. The fluorite-structured ceria grows epitaxially on the anatase-structured titania, and this epitaxial growth influences the morphology of the nanoparticles. The presence of defects in the ceria - such as dislocations and surface steps - was routinely observed in HAADF STEM. Density functional theory (DFT) calculations indicate an energetic preference for the formation of O vacancies and the corresponding Ce 3+ sites at the ceria-titania interface. Experimental corroboration by soft X-ray absorption spectroscopy (SXAS) does suggest the presence of Ce3+ sites at the interface. © 2013 American Chemical Society.The research carried out at the Center for Functional Nanomaterials and the Chemistry Department of Brookhaven National Laboratory was supported by the U.S. Department of Energy, Office of Basic Energy Sciences, under Contract No. DE-AC02-98CH10886. The theoretical studies were funded by the Ministry of Economy and Competitiveness (Spain, grants MAT2012-31526 and CSD2008-0023) and EU FEDER. Computational resources were provided by the Barcelona Supercomputing Center/Centro Nacional de Supercomputación (Spain).Peer Reviewe

Interaction between non-executive and executive directors in English National Health Service trust boards: an observational study

Research funded by Burdett FoundationBackground National Health Service (NHS) trusts, which provide the majority of hospital and community health services to the English NHS, are increasingly adopting a ‘public firm’ model with a board consisting of executive directors who are trust employees and external non-executives chosen for their experience in a range of areas such as finance, health care and management. In this paper we compare the non-executive directors’ roles and interests in, and contributions to, NHS trust boards’ governance activities with those of executive directors; and examine non-executive directors’ approach to their role in board meetings. Methods Non-participant observations of three successive trust board meetings in eight NHS trusts (primary care trusts, foundation trusts and self-governing (non-foundation) trusts) in England in 2008–9. The observational data were analysed inductively to yield categories of behaviour reflecting the perlocutionary types of intervention which non-executive directors made in trust meetings. Results The observational data revealed six main perlocutionary types of questioning tactic used by non-executive directors to executive directors: supportive; lesson-seeking; diagnostic; options assessment; strategy seeking; and requesting further work. Non-executive board members’ behaviours in holding the executive team to account at board meetings were variable. Non-executive directors were likely to contribute to finance-related discussions which suggests that they did see financial challenge as a key component of their role. Conclusions The pattern of behaviours was more indicative of an active, strategic approach to governance than of passive monitoring or ‘rubber-stamping’. Nevertheless, additional means of maintaining public accountability of NHS trusts may also be required

High Levels of Sediment Contamination Have Little Influence on Estuarine Beach Fish Communities

While contaminants are predicted to have measurable impacts on fish assemblages, studies have rarely assessed this potential in the context of natural variability in physico-chemical conditions within and between estuaries. We investigated links between the distribution of sediment contamination (metals and PAHs), physico-chemical variables (pH, salinity, temperature, turbidity) and beach fish assemblages in estuarine environments. Fish communities were sampled using a beach seine within the inner and outer zones of six estuaries that were either heavily modified or relatively unmodified by urbanization and industrial activity. All sampling was replicated over two years with two periods sampled each year. Shannon diversity, biomass and abundance were all significantly higher in the inner zone of estuaries while fish were larger on average in the outer zone. Strong differences in community composition were also detected between the inner and outer zones. Few differences were detected between fish assemblages in heavily modified versus relatively unmodified estuaries despite high concentrations of sediment contaminants in the inner zones of modified estuaries that exceeded recognized sediment quality guidelines. Trends in species distributions, community composition, abundance, Shannon diversity, and average fish weight were strongly correlated to physico-chemical variables and showed a weaker relationship to sediment metal contamination. Sediment PAH concentrations were not significantly related to the fish assemblage. These findings suggest that variation in some physico-chemical factors (salinity, temperature, pH) or variables that co-vary with these factors (e.g., wave activity or grain size) have a much greater influence on this fish assemblage than anthropogenic stressors such as contamination

The low-frequency environment of the Murchison Widefield Array : radio-frequency interference analysis and mitigation

This is the Accepted Manuscript version of the following article: A. R. Offringa, et al., “The low-frequency environment of the Murchison Widefield Array: radio-frequency interference analysis and mitigation”, Publications of the Astronomical Society of Australia, Vol. 32, March 2015. The final published version is available at: https://doi.org/10.1017/pasa.2015.7 © Astronomical Society of Australia 2015The Murchison Widefield Array (MWA) is a new low-frequency interferometric radio telescope built in Western Australia at one of the locations of the future Square Kilometre Array (SKA). We describe the automated radio-frequency interference (RFI) detection strategy implemented for the MWA, which is based on the AOFlagger platform, and present 72-231-MHz RFI statistics from 10 observing nights. RFI detection removes 1.1% of the data. RFI from digital TV (DTV) is observed 3% of the time due to occasional ionospheric or atmospheric propagation. After RFI detection and excision, almost all data can be calibrated and imaged without further RFI mitigation efforts, including observations within the FM and DTV bands. The results are compared to a previously published Low-Frequency Array (LOFAR) RFI survey. The remote location of the MWA results in a substantially cleaner RFI environment compared to LOFAR's radio environment, but adequate detection of RFI is still required before data can be analysed. We include specific recommendations designed to make the SKA more robust to RFI, including: the availability of sufficient computing power for RFI detection; accounting for RFI in the receiver design; a smooth band-pass response; and the capability of RFI detection at high time and frequency resolution (second and kHz-scale respectively).Peer reviewedFinal Accepted Versio

Broadband Spectral Modeling of the Extreme Gigahertz-Peaked Spectrum Radio Source PKS B0008-421

J. R. Callingham, et al., “Broadband Spectral Modeling of the Extreme Gigahertz-Peaked Spectrum Radio Source PKS B0008-421”, Astrophysical Journal, Vol. 809(2), August 2015. © 2015. The American Astronomical Society. All rights reserved.We present broadband observations and spectral modeling of PKS B0008-421, and identify it as an extreme gigahertz-peaked spectrum (GPS) source. PKS B0008-421 is characterized by the steepest known spectral slope below the turnover, close to the theoretical limit of synchrotron self-absorption, and the smallest known spectral width of any GPS source. Spectral coverage of the source spans from 0.118 to 22 GHz, which includes data from the Murchison Widefield Array and the wide bandpass receivers on the Australia Telescope Compact Array. We have implemented a Bayesian inference model fitting routine to fit the data with various absorption models. We find that without the inclusion of a high-frequency exponential break the absorption models can not accurately fit the data, with significant deviations above and below the peak in the radio spectrum. The addition of a high-frequency break provides acceptable spectral fits for the inhomogeneous free-free absorption and double-component synchrotron self-absorption models, with the inhomogeneous free-free absorption model statistically favored. The requirement of a high-frequency spectral break implies that the source has ceased injecting fresh particles. Additional support for the inhomogeneous free-free absorption model as being responsible for the turnover in the spectrum is given by the consistency between the physical parameters derived from the model fit and the implications of the exponential spectral break, such as the necessity of the source being surrounded by a dense ambient medium to maintain the peak frequency near the gigahertz region. The discovery of PKS B0008-421 suggests that the next generation of low radio frequency surveys could reveal a large population of GPS sources that have ceased activity, and that a portion of the ultra-steep spectrum source population could be composed of these GPS sources in a relic phase.Peer reviewedFinal Published versio

Theoretical Analysis of Competing Conformational Transitions in Superhelical DNA

We develop a statistical mechanical model to analyze the competitive behavior of transitions to multiple alternate conformations in a negatively supercoiled DNA molecule of kilobase length and specified base sequence. Since DNA superhelicity topologically couples together the transition behaviors of all base pairs, a unified model is required to analyze all the transitions to which the DNA sequence is susceptible. Here we present a first model of this type. Our numerical approach generalizes the strategy of previously developed algorithms, which studied superhelical transitions to a single alternate conformation. We apply our multi-state model to study the competition between strand separation and B-Z transitions in superhelical DNA. We show this competition to be highly sensitive to temperature and to the imposed level of supercoiling. Comparison of our results with experimental data shows that, when the energetics appropriate to the experimental conditions are used, the competition between these two transitions is accurately captured by our algorithm. We analyze the superhelical competition between B-Z transitions and denaturation around the c-myc oncogene, where both transitions are known to occur when this gene is transcribing. We apply our model to explore the correlation between stress-induced transitions and transcriptional activity in various organisms. In higher eukaryotes we find a strong enhancement of Z-forming regions immediately 5′ to their transcription start sites (TSS), and a depletion of strand separating sites in a broad region around the TSS. The opposite patterns occur around transcript end locations. We also show that susceptibility to each type of transition is different in eukaryotes and prokaryotes. By analyzing a set of untranscribed pseudogenes we show that the Z-susceptibility just downstream of the TSS is not preserved, suggesting it may be under selection pressure

Extragalactic Peaked-Spectrum Radio Sources at Low Frequencies

This document is the Accepted Manuscript of the following article: J.R. Callingham, et al, 'Extragalactic Peaked-Spectrum Radio Sources at Low Frequencies', The Astrophysical Journal, 836 (2), (28pp), first published online 17 February 2017. DOI: https://doi.org/10.3847/1538-4357-836/2/174. © 2017, The American Astronomical Society. All rights reserved. Data tables, and the appendix containing all of the SEDs, are available from the journal and on request to the authorWe present a sample of 1,483 sources that display spectral peaks between 72 MHz and 1.4 GHz, selected from the GaLactic and Extragalactic All-sky Murchison Widefield Array (GLEAM) survey. The GLEAM survey is the widest fractional bandwidth all-sky survey to date, ideal for identifying peaked-spectrum sources at low radio frequencies. Our peaked-spectrum sources are the low frequency analogues of gigahertz-peaked spectrum (GPS) and compact-steep spectrum (CSS) sources, which have been hypothesized to be the precursors to massive radio galaxies. Our sample more than doubles the number of known peaked-spectrum candidates, and 95% of our sample have a newly characterized spectral peak. We highlight that some GPS sources peaking above 5 GHz have had multiple epochs of nuclear activity, and demonstrate the possibility of identifying high redshift ($z > 2$) galaxies via steep optically thin spectral indices and low observed peak frequencies. The distribution of the optically thick spectral indices of our sample is consistent with past GPS/CSS samples but with a large dispersion, suggesting that the spectral peak is a product of an inhomogeneous environment that is individualistic. We find no dependence of observed peak frequency with redshift, consistent with the peaked-spectrum sample comprising both local CSS sources and high-redshift GPS sources. The 5 GHz luminosity distribution lacks the brightest GPS and CSS sources of previous samples, implying that a convolution of source evolution and redshift influences the type of peaked-spectrum sources identified below 1 GHz. Finally, we discuss sources with optically thick spectral indices that exceed the synchrotron self-absorption limit.Peer reviewedFinal Accepted Versio

Lethal Mutants and Truncated Selection Together Solve a Paradox of the Origin of Life

BACKGROUND: Many attempts have been made to describe the origin of life, one of which is Eigen's cycle of autocatalytic reactions [Eigen M (1971) Naturwissenschaften 58, 465-523], in which primordial life molecules are replicated with limited accuracy through autocatalytic reactions. For successful evolution, the information carrier (either RNA or DNA or their precursor) must be transmitted to the next generation with a minimal number of misprints. In Eigen's theory, the maximum chain length that could be maintained is restricted to 100-1000 nucleotides, while for the most primitive genome the length is around 7000-20,000. This is the famous error catastrophe paradox. How to solve this puzzle is an interesting and important problem in the theory of the origin of life. METHODOLOGY/PRINCIPAL FINDINGS: We use methods of statistical physics to solve this paradox by carefully analyzing the implications of neutral and lethal mutants, and truncated selection (i.e., when fitness is zero after a certain Hamming distance from the master sequence) for the critical chain length. While neutral mutants play an important role in evolution, they do not provide a solution to the paradox. We have found that lethal mutants and truncated selection together can solve the error catastrophe paradox. There is a principal difference between prebiotic molecule self-replication and proto-cell self-replication stages in the origin of life. CONCLUSIONS/SIGNIFICANCE: We have applied methods of statistical physics to make an important breakthrough in the molecular theory of the origin of life. Our results will inspire further studies on the molecular theory of the origin of life and biological evolution