Mitochondrial dysfunction in Autism Spectrum Disorders

Autism spectrum disorders (ASD) are classified as neurodevelopmental disorders characterised by diminished social communication and interaction. Recently, evidence has accrued that a significant proportion of individuals with autism have concomitant diseases such as mitochondrial disease and abnormalities of energy generation. This has therefore led to the hypothesis that autism may be linked to mitochondrial dysfunction. We review such studies reporting decreased activity of mitochondrial electron transport chain (ETC) complexes and reduced gene expression of mitochondrial genes, in particular genes of respiratory chain complexes, in individuals with autism. Overall, the findings support the hypothesis that there is an association of ASD with impaired mitochondrial function; however, many of the studies have small sample sizes and there is variability in the techniques utilised. There is therefore a vital need to utilise novel imaging techniques, such as near-infrared spectroscopy, that will allow noninvasive measurement of metabolic markers for neuronal activity such as cytochrome c oxidase, in order to better establish the link between autism and mitochondrial dysfunction

Seismic interpretation and generation of key depth structure surfaces within the Carboniferous and Devonian of the Orcadian Study Area, Quadrants 7-9, 11-15 and 19-21

This report details the rationale, methodology and results of a regional seismic interpretation of the 21CXRM Palaeozoic ‘Orcadian study area’, specifically the Inner Moray Firth and western Outer Moray Firth basins (Quadrants 11–15), the East Orkney Basin (Quadrant 13) and the Grampian High area (Quadrants 19–21). The aim of the interpretation was to create Two-Way Travel Time (TWTT) and depth maps that show the distribution of Palaeozoic basins and highs, and where possible interpret key Devono-Carboniferous surfaces and main structural elements in order to contribute a tectono-stratigraphic model of the Palaeozoic succession. Some 35,000 line kilometres of predominantly 2D seismic data have been interpreted and tied to key released wells in the study area. In total, 8 depth structure maps of key horizons have been produced for the pre-Permian succession. The maps do not cover the entire study area as it was not possible to interpret a specific seismic reflector everywhere due both to seismic resolution and also current day extents (as a result of non-deposition and/or erosion). These maps provide a key element to aid assessment of the petroleum systems of the Palaeozoic sequence within the study area. Where present, the surfaces with a grid spacing of 5000 m, give a regional view of the topography of the horizons, and comprise: Inner and Outer Moray Firth and East Orkney Basin area Base Zechstein; Top Firth Coal Formation; Top Eday Marl Formation; Top Orcadia Formation; Base Orcadia Formation; Top Struie Formation; Top Basement. The geological succession over the Grampian High area was such that only the following surfaces were generated: Base Zechstein; Base Carboniferous/ Top Devonian; Top Basement. The regional structure map of the area constructed for this report, and observations made from the seismic data, have been integrated with peer reviewed published information to describe a tectonic synthesis for the region (Leslie et. al., 2016). A new pre-Permian subcrop map is presented here that builds on existing publications (Smith, 1985; Marshall and Hewett 2003) and incorporates relevant new well penetrations since the previous maps were published. The well dataset has been either validated or re-interpreted before being integrated with the new seismic interpretation. The map extends the interpretation of the pre-Permian subcrop northwards from the published Central North Sea map (Arsenikos et al., 2015)

Localized modes at a D-brane--O-plane intersection and heterotic Alice strings

We study a system of $N_c$ $D3$-branes intersecting $D7$-branes and $O7$-planes in 1+1-dimensions. We use anomaly cancellation and string dualities to argue that there must be chiral fermion zero-modes on the $D3$-branes which are localized near the $O7$-planes. Away from the orientifold limit we verify this by using index theory as well as explicit construction of the zero-modes. This system is related to F-theory on K3 and heterotic matrix string theory, and the heterotic strings are related to Alice string defects in $\mathcal{N}=4$ Super-Yang-Mills. In the limit of large $N_c$ we find an $AdS_3$ dual of the heterotic matrix string CFT.Comment: 44 pages, typos corrected, version published in JHE

Non-invasive measurement of a metabolic marker of infant brain function

While near-infrared spectroscopy (NIRS) haemodynamic measures have proven to be vastly useful in investigating human brain development, the haemodynamic response function (HRF) in infants is not yet fully understood. NIRS measurements of the oxidation state of mitochondrial enzyme cytochrome-c-oxidase (oxCCO) have the potential to yield key information about cellular oxygen utilisation and therefore energy metabolism. We used a broadband NIRS system to measure changes in oxCCO, in addition to haemodynamic changes, during functional activation in a group of 33 typically developing infants aged between 4 and 6 months. The responses were recorded over the right temporal lobe while the infants were presented with engaging videos containing social content. A significant increase in oxCCO was found in response to the social stimuli, with maximum increase of 0.238 ± 0.13 μM. These results are the first reported significant change in oxCCO in response to stimulus-evoked activation in human infants and open new vistas for investigating human infant brain function and its energy metabolism

Report of the laboratory confirmation of cases from the CDTUB Pobé, Benin

In 2009, 420 diagnostic samples (corresponding to 301 patients suspected of M. ulcerans infection) from the Centre de Dépistage et de Traitement de l’Ulcère de Buruli of Benin were subjected to IS2404 PCR at the Centre Hospitalier Universitaire of Angers. 180 samples (corresponding to 141 patients) were confirmed positive to M. ulcerans infection by PCR

Specific pathway abundances in the neonatal calf faecal microbiome are associated with susceptibility to Cryptosporidium parvum infection: a metagenomic analysis.

Cryptosporidium parvum is the main cause of calf scour worldwide. With limited therapeutic options and research compared to other Apicomplexa, it is important to understand the parasites' biology and interactions with the host and microbiome in order to develop novel strategies against this infection. The age-dependent nature of symptomatic cryptosporidiosis suggests a link to the undeveloped immune response, the immature intestinal epithelium, and its associated microbiota. This led us to hypothesise that specific features of the early life microbiome could predict calf susceptibility to C. parvum infection. In this study, a single faecal swab sample was collected from each calf within the first week of life in a cohort of 346 animals. All 346 calves were subsequently monitored for clinical signs of cryptosporidiosis, and calves that developed diarrhoea were tested for Rotavirus, Coronavirus, E. coli F5 (K99) and C. parvum by lateral flow test (LFT). A retrospective case–control approach was taken whereby a subset of healthy calves (Control group; n = 33) and calves that went on to develop clinical signs of infectious diarrhoea and test positive for C. parvum infection via LFT (Cryptosporidium-positive group; n = 32) were selected from this cohort, five of which were excluded due to low DNA quality. A metagenomic analysis was conducted on the faecal microbiomes of the control group (n = 30) and the Cryptosporidium-positive group (n = 30) prior to infection, to determine features predictive of cryptosporidiosis. Taxonomic analysis showed no significant differences in alpha diversity, beta diversity, and taxa relative abundance between controls and Cryptosporidium-positive groups. Analysis of functional potential showed pathways related to isoprenoid precursor, haem and purine biosynthesis were significantly higher in abundance in calves that later tested positive for C. parvum (q ≤ 0.25). These pathways are either absent or streamlined in the C. parvum parasites. Though the de novo production of isoprenoid precursors, haem and purines are absent, C. parvum has been shown to encode enzymes that catalyse the downstream reactions of these pathway metabolites, indicating that C. parvum may scavenge those products from an external source. The host has previously been put forward as the source of essential metabolites, but our study suggests that C. parvum may also be able to harness specific metabolic pathways of the microbiota in order to survive and replicate. This finding is important as components of these microbial pathways could be exploited as potential therapeutic targets for the prevention or mitigation of cryptosporidiosis in bovine neonates

Land management effects on wet aggregate stability and carbon content

Land management affects soil structure and many other soil properties and processes. Our objectives were to evaluate soil organic C (SOC), aggregate size distribution, aggregate-associated C, and soil structure as affected by long-term land management and slope. A chronosequence of 38 on-farm sites with low to high (5–18%) slopes was selected to evaluate 5–40 yr of management. The sites were classified as business as usual (BAU) cropland (BAU-Crop), BAU pasture (BAU-Past), newly established conservation reserve program (CRP) areas (CRP-New), and established CRP (CRP-Old). Soil samples were collected from the 0-to-5- and 5-to-15-cm depth increments and processed for soil property measurements including fractionation by wet sieving into five aggregate size classes (\u3e2,000, 1,000–2,000, 500–1,000, 250–500, and 53–250 μm). Within the surface 5 cm, mean weight diameter (MWD) and geometric mean diameter (GMD) were used to characterize soil structural stability. The BAU-Past and CRP-Old sites had 79% more macroaggregates (\u3e2,000, 1,000–2,000, and 500–1,000 μm), 123% higher MWD, 38% higher GMD, and 47% higher SOC than BAU-Crop or CRP-New sites. The 5-to-15-cm depth increment showed a similar but lower magnitude response. Aggregate-associated C was quantified using a constant soil mass that reflected aggregate size distribution to prevent overestimating C content. Lower-slope locations had more SOC, more macroaggregates, more C associated with macroaggregates, and higher GMD and MWD compared with high-slope locations across all management classifications and soil depths. The results support our hypothesis that the high-slop soils may benefits from specific management decisions than the lower-sloping soils as a function of landscape property. We recommend reestablishing grassland on sloping land that is susceptible to excessive soil erosion, although those practices will likely take a long time to restore soil structural stability and SOC content to precultivation levels

Crop Residue Management Challenges: A Special Issue Overview

The amount of crop residues that can be sustainability removed is highly variable and is a function of many factors including the soil, climatic, and plant characteristics. For example, leaving an insufficient amount of crop residue on the soil surface can be detrimental for soil quality, result in loss of soil organic matter (SOM), and increase soil erosion, whereas leaving excessive amounts can impair soil-seed contact, immobilize N, and/or keep soils cool and wet. This special issue evolved as an outcome of, “Crop Residues for Advanced Biofuels: Effects on Soil Carbon” workshop held in Sacramento, CA, in 2017. The goal of the special issue is to provide a forum for identifying knowledge gaps associated with crop residue management and to expand the discussion from a regional Midwestern U.S. to a global perspective. Several crop residue experiments as well as simulation modeling studies are included to examine effects of tillage, crop rotation, livestock grazing, and cover crops on greenhouse gas (GHG) emissions, crop yield, and soil or plant health. The special issue is divided into 4 sections that include (i) Estimating Crop Residue Removal and Modeling; (ii) Cultural Practice Impact on Soil Health; (iii) Residue Removal Impact on Soil and Plant Health; and (iv) Cultural Practice Impact on Carbon Storage and Greenhouse Gas Emissions

Gauge Theory and the Excision of Repulson Singularities

We study brane configurations that give rise to large-N gauge theories with eight supersymmetries and no hypermultiplets. These configurations include a variety of wrapped, fractional, and stretched branes or strings. The corresponding spacetime geometries which we study have a distinct kind of singularity known as a repulson. We find that this singularity is removed by a distinctive mechanism, leaving a smooth geometry with a core having an enhanced gauge symmetry. The spacetime geometry can be related to large-N Seiberg-Witten theory.Comment: 31 pages LaTeX, 2 figures (v3: references added