Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Acoustic emission potentialities for characterization of Mullins effect in natural rubber materials filled with carbon black

International audienc

Evidence from Tm anomalies for non-CI refractory lithophile element proportions in terrestrial planets and achondrites

Thulium is a heavy rare earth element (REE) whose geochemical behavior is intermediate between Er and Yb, and that is not expected to be decoupled from these elements during accretion of planetary bodies and geological processes. However, irregularities in REE volatilities at higher temperature could have decoupled the REEs relative to one another during the early stages of condensation of the solar nebula. Indeed, positive Tm anomalies are found in some refractory inclusions from carbonaceous chondrites, and it is possible that large scale nebular reservoirs displaying positive or negative Tm anomalies were formed during the early history of the solar system. We analyzed a series of meteorites and terrestrial rocks in order to evaluate the existence of Tm anomalies in planetary materials. Relative to CIs (Ivuna-type carbonaceous chondrites), carbonaceous chondrites display unresolved or positive Tm anomalies, while most of the noncarbonaceous chondrites show slightly negative Tm anomalies. Quantification of these anomalies in terrestrial samples is complicated when samples display fractionated heavy REE patterns. Taking this effect into account, we show that the Earth, Mars, Vesta, the aubrite and ureilite parent bodies display small negative anomalies (Tm/Tm∗≈0.975), very similar to those found in ordinary and enstatite chondrites. We suggest that a slight negative Tm anomaly relative to CI is a widespread feature of the materials from the inner solar system. This finding suggests that CI chondrites may not be appropriate for normalizing REE abundance patterns of most planetary materials as they may be enriched in a high-temperature refractory component with non-solar composition. The presence of Tm anomalies at a bulk planetary scale is, to this day, the strongest piece of evidence that refractory lithophile elements are not present in constant proportions in planetary bodies

Nicotiana benthamiana is a suitable transient system for high-level expression of an active inhibitor of cotton boll weevil α-amylase

Abstract Background Insect resistance in crops represents a main challenge for agriculture. Transgenic approaches based on proteins displaying insect resistance properties are widely used as efficient breeding strategies. To extend the spectrum of targeted pathogens and overtake the development of resistance, molecular evolution strategies have been used on genes encoding these proteins to generate thousands of variants with new or improved functions. The cotton boll weevil (Anthonomus grandis) is one of the major pests of cotton in the Americas. An α-amylase inhibitor (α-AIC3) variant previously developed via molecular evolution strategy showed inhibitory activity against A. grandis α-amylase (AGA). Results We produced in a few days considerable amounts of α-AIC3 using an optimised transient heterologous expression system in Nicotiana benthamiana. This high α-AIC3 accumulation allowed its structural and functional characterizations. We demonstrated via MALDI-TOF MS/MS technique that the protein was processed as expected. It could inhibit up to 100% of AGA biological activity whereas it did not act on α-amylase of two non-pathogenic insects. These data confirmed that N. benthamiana is a suitable and simple system for high-level production of biologically active α-AIC3. Based on other benefits such as economic, health and environmental that need to be considerate, our data suggested that α-AIC3 could be a very promising candidate for the production of transgenic crops resistant to cotton boll weevil without lethal effect on at least two non-pathogenic insects. Conclusions We propose this expression system can be complementary to molecular evolution strategies to identify the most promising variants before starting long-lasting stable transgenic programs