Region Adjacency Graph Approach for Acral Melanocytic Lesion Segmentation

Malignant melanoma is among the fastest increasing malignancies in many countries. Due to its propensity to metastasize and lack of effective therapies for most patients with advanced disease, early detection of melanoma is a clinical imperative. In non-Caucasian populations, melanomas are frequently located in acral volar areas and their dermoscopic appearance differs from the non-acral ones. Although lesion segmentation is a natural preliminary step towards its further analysis, so far virtually no acral skin lesion segmentation method has been proposed. Our goal was to develop an effective segmentation algorithm dedicated for acral lesions

Fully Automated Lipid Pool Detection Using Near Infrared Spectroscopy

Background. Detecting and identifying vulnerable plaque, which is prone to rupture, is still a challenge for cardiologist. Such lipid core-containing plaque is still not identifiable by everyday angiography, thus triggering the need to develop a new tool where NIRS-IVUS can visualize plaque characterization in terms of its chemical and morphologic characteristic. The new tool can lead to the development of new methods of interpreting the newly obtained data. In this study, the algorithm to fully automated lipid pool detection on NIRS images is proposed. Method. Designed algorithm is divided into four stages: preprocessing (image enhancement), segmentation of artifacts, detection of lipid areas, and calculation of Lipid Core Burden Index. Results. A total of 31 NIRS chemograms were analyzed by two methods. The metrics, total LCBI, maximal LCBI in 4 mm blocks, and maximal LCBI in 2 mm blocks, were calculated to compare presented algorithm with commercial available system. Both intraclass correlation (ICC) and Bland-Altman plots showed good agreement and correlation between used methods. Conclusions. Proposed algorithm is fully automated lipid pool detection on near infrared spectroscopy images. It is a tool developed for offline data analysis, which could be easily augmented for newer functions and projects

Interpretability of a deep learning based approach for the classification of skin lesions into main anatomic body sites

Over the past few decades, different clinical diagnostic algorithms have been proposed to diagnose malignant melanoma in its early stages. Furthermore, the detection of skin moles driven by current deep learning based approaches yields impressive results in the classification of malignant melanoma. However, in all these approaches, the researchers do not take into account the origin of the skin lesion. It has been observed that the specific criteria for in situ and early invasive melanoma highly depend on the anatomic site of the body. To address this problem, we propose a deep learning architecture based framework to classify skin lesions into the three most important anatomic sites, including the face, trunk and extremities, and acral lesions. In this study, we take advantage of pretrained networks, including VGG19, ResNet50, Xception, DenseNet121, and EfficientNetB0, to calculate the features with an adjusted and densely connected classifier. Furthermore, we perform in depth analysis on database, architecture, and result regarding the effectiveness of the proposed framework. Experiments confirm the ability of the developed algorithms to classify skin lesions into the most important anatomical sites with 91.45% overall accuracy for the EfficientNetB0 architecture, which is a state-of-the-art result in this domain

The Object Segmentation from the Microstructure of a FSW Dissimilar Weld

Friction stir welding (FSW) is an environmentally friendly, solid-state welding technique. In this research work, we analyze the microstructure of a new type of FSW weld applying a two- stage framework based on image processing algorithms containing a segmentation step and microstructure analysis of objects occurring in different layers. A dual-speed tool as used to prepare the tested weld. In this paper, we present the segmentation method for recognizing areas containing particles forming bands in the microstructure of a dissimilar weld of aluminum alloys made by FSW technology. A digital analysis was performed on the images obtained using an Olympus GX51 light microscope. The image analysis process consisted of basic segmentation methods in conjunction with domain knowledge and object detection located in different layers of a weld using morphological operations and point transformations. These methods proved to be effective in the analysis of the microstructure images corrupted by noise. The segmentation parts as well as single objects were separated enough to analyze the distribution on different layers of the specimen and the variability of shape and size of the underlying microstructures, which was not possible without computer vision support

Fully Automated Lumen Segmentation Method for Intracoronary Optical Coherence Tomography.

BACKGROUND: Optical coherence tomography (OCT) is an innovative imaging technique that generates high-resolution intracoronary images. In the last few years, the need for more precise analysis regarding coronary artery disease to achieve optimal treatment has made intravascular imaging an area of primary importance in interventional cardiology. One of the main challenges in OCT image analysis is the accurate detection of lumen which is significant for the further prognosis. METHOD: In this research, we present a new approach to the segmentation of lumen in OCT images. The proposed work is focused on designing an efficient automatic algorithm containing the following steps: preprocessing (artifacts removal: speckle noise, circular rings, and guide wire), conversion between polar and Cartesian coordinates, and segmentation algorithm. RESULTS: The implemented method was tasted on 667 OCT frames. The lumen border was extracted with a high correlation compared to the ground truth: 0.97 ICC (0.97-0.98). CONCLUSIONS: Proposed algorithm allows for fully automated lumen segmentation on optical coherence tomography images. This tool may be applied to automated quantitative lumen analysis.Peer Reviewe

A Deep Learning Approach to Vascular Structure Segmentation in Dermoscopy Colour Images

Background. Atypical vascular pattern is one of the most important features by differentiating between benign and malignant pigmented skin lesions. Detection and analysis of vascular structures is a necessary initial step for skin mole assessment; it is a prerequisite step to provide an accurate outcome for the widely used 7-point checklist diagnostic algorithm. Methods. In this research we present a fully automated machine learning approach for segmenting vascular structures in dermoscopy colour images. The U-Net architecture is based on convolutional networks and designed for fast and precise segmentation of images. After preprocessing the images are randomly divided into 146516 patches of 64×64 pixels each. Results. On the independent validation dataset including 74 images our implemented method showed high segmentation accuracy. For the U-Net convolutional neural network, an average DSC of 0.84, sensitivity 0.85, and specificity 0.81 has been achieved. Conclusion. Vascular structures due to small size and similarity to other local structures create enormous difficulties during the segmentation and assessment process. The use of advanced segmentation methods like deep learning, especially convolutional neural networks, has the potential to improve the accuracy of advanced local structure detection

Novel Method for Border Irregularity Assessment in Dermoscopic Color Images

Background. One of the most important lesion features predicting malignancy is border irregularity. Accurate assessment of irregular borders is clinically important due to significantly different occurrence in benign and malignant skin lesions. Method. In this research, we present a new approach for the detection of border irregularities, as one of the major parameters in a widely used diagnostic algorithm the ABCD rule of dermoscopy. The proposed work is focused on designing an efficient automatic algorithm containing the following steps: image enhancement, lesion segmentation, borderline calculation, and irregularities detection. The challenge lies in determining the exact borderline. For solving this problem we have implemented a new method based on lesion rotation and borderline division. Results. The algorithm has been tested on 350 dermoscopic images and achieved accuracy of 92% indicating that the proposed computational approach captured most of the irregularities and provides reliable information for effective skin mole examination. Compared to the state of the art, we obtained improved classification results. Conclusions. The current study suggests that computer-aided system is a practical tool for dermoscopic image assessment and could be recommended for both research and clinical applications. The proposed algorithm can be applied in different fields of medical image analysis including, for example, CT and MRI images

Computer-Aided Diagnosis of Micro-Malignant Melanoma Lesions Applying Support Vector Machines

Background. One of the fatal disorders causing death is malignant melanoma, the deadliest form of skin cancer. The aim of the modern dermatology is the early detection of skin cancer, which usually results in reducing the mortality rate and less extensive treatment. This paper presents a study on classification of melanoma in the early stage of development using SVMs as a useful technique for data classification. Method. In this paper an automatic algorithm for the classification of melanomas in their early stage, with a diameter under 5 mm, has been presented. The system contains the following steps: image enhancement, lesion segmentation, feature calculation and selection, and classification stage using SVMs. Results. The algorithm has been tested on 200 images including 70 melanomas and 130 benign lesions. The SVM classifier achieved sensitivity of 90% and specificity of 96%. The results indicate that the proposed approach captured most of the malignant cases and could provide reliable information for effective skin mole examination. Conclusions. Micro-melanomas due to the small size and low advancement of development create enormous difficulties during the diagnosis even for experts. The use of advanced equipment and sophisticated computer systems can help in the early diagnosis of skin lesions