MicroRNAs and long non-coding RNAs in cartilage homeostasis and osteoarthritis

During the last decade, osteoarthritis (OA) has become one of the most prevalent musculoskeletal diseases worldwide. OA is characterized by progressive loss of articular cartilage, abnormal remodeling of subchondral bone, hyperplasia of synovial cells, and growth of osteophytes, which lead to chronic pain and disability. The pathological mechanisms underlying OA initiation and progression are still poorly understood. Non-coding RNAs (ncRNAs) constitute a large portion of the transcriptome that do not encode proteins but function in numerous biological processes. Cumulating evidence has revealed a strong association between the changes in expression levels of ncRNA and the disease progression of OA. Moreover, loss- and gain-of-function studies utilizing transgenic animal models have demonstrated that ncRNAs exert vital functions in regulating cartilage homeostasis, degeneration, and regeneration, and changes in ncRNA expression can promote or decelerate the progression of OA through distinct molecular mechanisms. Recent studies highlighted the potential of ncRNAs to serve as diagnostic biomarkers, prognostic indicators, and therapeutic targets for OA. MiRNAs and lncRNAs are two major classes of ncRNAs that have been the most widely studied in cartilage tissues. In this review, we focused on miRNAs and lncRNAs and provided a comprehensive understanding of their functional roles as well as molecular mechanisms in cartilage homeostasis and OA pathogenesis

Positive solutions for a nonlinear periodic boundary-value problem with a parameter

Using topological degree theory with a partially ordered structure of space, sufficient conditions for the existence and multiplicity of positive solutions for a second-order nonlinear periodic boundary-value problem are established. Inspired by ideas in Guo and Lakshmikantham [6], we study the dependence of positive periodic solutions as a parameter approaches infinity, $$ lim_{lambdao +infty}|x_{lambda}|=+infty,quadhbox{or}quad lim_{lambdao+infty}|x_{lambda}|=0. $

Instantaneous frequency extraction in time-varying structures using a maximum gradient method

A method is proposed for the identification of instantaneous frequencies (IFs) in time-varying structures. The proposed method combines a maximum gradient algorithm and a smoothing operation. The maximum gradient algorithm is designed to extract the wavelet ridges of response signals. The smoothing operation, based on a polynomial curve fitting algorithm and a threshold method, is employed to reduce the effects of random noises. To verify the effectiveness and accuracy of the proposed method, a numerical example of a signal with two frequency modulated components is investigated and an experimental test on a steel cable with time-varying tensions is also conducted. The results demonstrate that the proposed method can extract IFs from the noisy multi-component signals and practical response signals successfully. In addition, the proposed method can provide a better IF identification results than the standard synchrosqueezing wavelet transform

The Urban Morphology on Our Planet - Global perspectives from Space

Urbanization is the second largest mega-trend right after climate change. Accurate measurements of urban morphological and demographic figures are at the core of many international endeavors to address issues of urbanization, such as the United Nations’ call for “Sustainable Cities and Communities”. In many countries – particularly developing countries –, however, this database does not yet exist. Here, we demonstrate a novel deep learning and big data analytics approach to fuse freely available global radar and multi-spectral satellite data, acquired by the Sentinel-1 and Sentinel-2 satellites. Via this approach, we created the firstever global and quality controlled urban local climate zones classification covering all cities across the globe with a population greater than 300K and made it available to the community. Statistical analysis of the data quantifies a global inequality problem: approximately 40% of the area defined as compact or light/large low-rise accommodates about 60% of the total population, whereas approximately 30% of the area defined as sparsely built accommodates only about 10% of the total population. Beyond, patterns of urban morphology were discovered from the global classification map, confirming a morphologic relationship to the geographical region and related cultural heritage. We expect the open access of our dataset to encourage research on the global change process of urbanization, as a multidisciplinary crowd of researchers will use this baseline for spatial perspective in their work. In addition, it can serve as a unique dataset for stakeholders such as the United Nations to improve their spatial assessments of urbanization

So2Sat LCZ42: A benchmark data set for the classification of global local climate zones

Gaining access to labeled reference data is one of the great challenges in supervised machine-learning endeavors. This is especially true for an automat ed analysis of remote sensing images on a global scale, which enables us to address global challenges, such as urbanization and climate change, using state-of-the-art machine-learning techniques. To meet these pressing needs, especially in urban research, we provide open access to a valuable benchmark data set, So2Sat LCZ42, which consists of local-climate-zone (LCZ) labels of approximately half a million Sentinel-1 and Sentinel-2 image patches in 42 urban agglomerations (plus 10 additional smaller areas) across the globe

Radiomic features from multiparametric magnetic resonance imaging predict molecular subgroups of pediatric low-grade gliomas

Abstract Background We aimed to develop machine learning models for prediction of molecular subgroups (low-risk group and intermediate/high-risk group) and molecular marker (KIAA1549-BRAF fusion) of pediatric low-grade gliomas (PLGGs) based on radiomic features extracted from multiparametric MRI. Methods 61 patients with PLGGs were included in this retrospective study, which were divided into a training set and an internal validation set at a ratio of 2:1 based on the molecular subgroups or the molecular marker. The patients were classified into low-risk and intermediate/high-risk groups, BRAF fusion positive and negative groups, respectively. We extracted 5929 radiomic features from multiparametric MRI. Thereafter, we removed redundant features, trained random forest models on the training set for predicting the molecular subgroups or the molecular marker, and validated their performance on the internal validation set. The performance of the prediction model was verified by 3-fold cross-validation. Results We constructed the classification model differentiating low-risk PLGGs from intermediate/high-risk PLGGs using 4 relevant features, with an AUC of 0.833 and an accuracy of 76.2% in the internal validation set. In the prediction model for predicting KIAA1549-BRAF fusion using 4 relevant features, an AUC of 0.818 and an accuracy of 81.0% were achieved in the internal validation set. Conclusions The current study demonstrates that MRI radiomics is able to predict molecular subgroups of PLGGs and KIAA1549-BRAF fusion with satisfying sensitivity. Trial registration This study was retrospectively registered at clinicaltrials.gov (NCT04217018)

Genome-wide association study of hippocampal blood-oxygen-level-dependent-cerebral blood flow correlation in Chinese Han population

Correlation between blood-oxygen-level-dependent (BOLD) and cerebral blood flow (CBF) has been used as an index of neurovascular coupling. Hippocampal BOLD-CBF correlation is associated with neurocognition, and the reduced correlation is associated with neuropsychiatric disorders. We conducted the first genome-wide association study of the hippocampal BOLD-CBF correlation in 4,832 Chinese Han subjects. The hippocampal BOLD-CBF correlation had an estimated heritability of 16.2-23.9% and showed reliable genome-wide significant association with a locus at 3q28, in which many variants have been linked to neuroimaging and cerebrospinal fluid markers of Alzheimer&#39;s disease. Gene-based association analyses showed four significant genes (GMNC, CRTC2, DENND4B, and GATAD2B) and revealed enrichment for mast cell calcium mobilization, microglial cell proliferation, and ubiquitin-related proteolysis pathways that regulate different cellular components of the neurovascular unit. This is the first unbiased identification of the association of hippocampal BOLD-CBF correlation, providing fresh insights into the genetic architecture of hippocampal neurovascular coupling.</p

Additional file 4 of Radiomic features from multiparametric magnetic resonance imaging predict molecular subgroups of pediatric low-grade gliomas

Supplementary Material