Genetic characterization of Toxoplasma gondii from Qinghai vole, Plateau pika and Tibetan ground-tit on the Qinghai-Tibet Plateau, China

Background The distribution of genetic diversity of Toxoplasma gondii in wildlife is of interest to understand the transmission of this parasite in the environment. Limited information on T. gondii genotypes has been reported in wildlife in China. The objective of this study was to carry out the genetic characterization of T. gondii isolates from wild animals on the Qinghai-Tibet Plateau. Methods Using PCR and multilocous polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technology, we detected genetic diversity of T. gondii isolates from Qinghai vole, Plateau pika and Tibetan ground-tit in these regions. Results In total, 183 brain tissues of different wild animals, including 48 Qinghai vole (Microtus fuscus), 101 Plateau pika (Ochotona curzoniae) and 34 Tibetan ground-tit (Pseudopodoces humilis), were tested for T. gondii infection. 11 of these were found to be positive for the T. gondii B1 gene by PCR amplification. These positive DNA samples were typed at 10 genetic markers, including 9 nuclear loci (SAG1, 5’-and 3’-SAG2, alternative SAG2, BTUB, GRA6, L358, PK1, c22-8, c29-2), and an apicoplast locus Apico. Six were successfully genotyped at eight or more genetic loci, and were grouped to three distinct genotypes. Four samples belonged to ToxoDB Genotype #10 and the other two samples were identified as two new genotypes (http://toxodb.org/toxo/ webcite). Conclusions To our knowledge, this is the first report of genetic typing of T. gondii isolates in wildlife on the Qinghai-Tibet Plateau, China. The results show that there is a potential risk for the transmission of this parasite through the wildlife in this region. doi:10.1186/1756-3305-6-29

Genetic characterization of Toxoplasma gondii from Qinghai vole, Plateau pika and Tibetan ground-tit on the Qinghai-Tibet Plateau, China

Background The distribution of genetic diversity of Toxoplasma gondii in wildlife is of interest to understand the transmission of this parasite in the environment. Limited information on T. gondii genotypes has been reported in wildlife in China. The objective of this study was to carry out the genetic characterization of T. gondii isolates from wild animals on the Qinghai-Tibet Plateau. Methods Using PCR and multilocous polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technology, we detected genetic diversity of T. gondii isolates from Qinghai vole, Plateau pika and Tibetan ground-tit in these regions. Results In total, 183 brain tissues of different wild animals, including 48 Qinghai vole (Microtus fuscus), 101 Plateau pika (Ochotona curzoniae) and 34 Tibetan ground-tit (Pseudopodoces humilis), were tested for T. gondii infection. 11 of these were found to be positive for the T. gondii B1 gene by PCR amplification. These positive DNA samples were typed at 10 genetic markers, including 9 nuclear loci (SAG1, 5’-and 3’-SAG2, alternative SAG2, BTUB, GRA6, L358, PK1, c22-8, c29-2), and an apicoplast locus Apico. Six were successfully genotyped at eight or more genetic loci, and were grouped to three distinct genotypes. Four samples belonged to ToxoDB Genotype #10 and the other two samples were identified as two new genotypes (http://toxodb.org/toxo/ webcite). Conclusions To our knowledge, this is the first report of genetic typing of T. gondii isolates in wildlife on the Qinghai-Tibet Plateau, China. The results show that there is a potential risk for the transmission of this parasite through the wildlife in this region. doi:10.1186/1756-3305-6-29

Genetic characterization of Toxoplasma gondii from Qinghai vole, Plateau pika and Tibetan ground-tit on the Qinghai-Tibet Plateau, China

Background The distribution of genetic diversity of Toxoplasma gondii in wildlife is of interest to understand the transmission of this parasite in the environment. Limited information on T. gondii genotypes has been reported in wildlife in China. The objective of this study was to carry out the genetic characterization of T. gondii isolates from wild animals on the Qinghai-Tibet Plateau. Methods Using PCR and multilocous polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technology, we detected genetic diversity of T. gondii isolates from Qinghai vole, Plateau pika and Tibetan ground-tit in these regions. Results In total, 183 brain tissues of different wild animals, including 48 Qinghai vole (Microtus fuscus), 101 Plateau pika (Ochotona curzoniae) and 34 Tibetan ground-tit (Pseudopodoces humilis), were tested for T. gondii infection. 11 of these were found to be positive for the T. gondii B1 gene by PCR amplification. These positive DNA samples were typed at 10 genetic markers, including 9 nuclear loci (SAG1, 5’-and 3’-SAG2, alternative SAG2, BTUB, GRA6, L358, PK1, c22-8, c29-2), and an apicoplast locus Apico. Six were successfully genotyped at eight or more genetic loci, and were grouped to three distinct genotypes. Four samples belonged to ToxoDB Genotype #10 and the other two samples were identified as two new genotypes (http://toxodb.org/toxo/ webcite). Conclusions To our knowledge, this is the first report of genetic typing of T. gondii isolates in wildlife on the Qinghai-Tibet Plateau, China. The results show that there is a potential risk for the transmission of this parasite through the wildlife in this region. doi:10.1186/1756-3305-6-29

Genetic Diversity in Echinococcus multilocularis From the Plateau Vole and Plateau Pika in Jiuzhi County, Qinghai Province, China

The Qinghai-Tibet Plateau is a highly endemic area of alveolar echinococcosis where a series of intermediate hosts, especially voles and pikas, are infected with Echinococcus multilocularis. The metacestodes of E. multilocularis are fluid-filled, asexually proliferating cysts, and they are mainly found in the host's liver in the form of tumor-like growths. In this study, we investigated the genetic variations of E. multilocularis in four mitochondrial (mt) genes, namely, NADH dehydrogenase subunit 5 (nad5), adenosine triphosphate subunit 6 (atp6), cytochrome c oxidase subunit 1 (cox1), and NADH dehydrogenase subunit 1 (nad1). The complete nad5, atp6, cox1, and nad1 genes were amplified separately from each hydatid cyst isolate using polymerase chain reaction (PCR) and then sequenced. Phylogenetic trees were then generated based on the combined mt genes using MrBayes 3.1.2 and PAUP version 4.0b10. The results showed that thirty of 102 voles and two of 49 pikas were infected with E. multilocularis. The genetic variation distances among all E. multilocularis samples were 0.1–0.4%, 0.2–0.4%, 0.1–0.6%, and 0.1–0.4% for nad5, atp6, nad1, and cox1, respectively. Compared to previous studies of the genetic diversity of E. multilocularis based on the cox1 gene, the genetic distances within the same group were 1.3–1.7% (Mongolia strain), 0.6–0.8% (North American strain), 0.3–0.6% (European strain), and 0.1–0.4% (Asian strain). Based on concatenated sequences of the nad5, atp6, cox1, and nad1 genes all haplotypes were divided into two clusters. In conclusion, the genetic diversity of E. multilocularis based on mt genes on a small local area is at low level but between different regions with long distance and different ecological environment each other, the genetic diversity is at relatively high level; genetic variation is higher in the nad1 gene than that in the other three mt genes. The results on a local scale provide basic information for further study of the molecular epidemiology, genetic differences and control of E. multilocularis in Qinghai Province, China

Critical Roles of microRNA-141-3p and CHD8 in Hypoxia/Reoxygenation-Induced Cardiomyocyte Apoptosis

Background: Cardiovascular diseases are currently the leading cause of death in humans. The high mortality of cardiac diseases is associated with myocardial ischemia and reperfusion (I/R). Recent studies have reported that microRNAs (miRNAs) play important roles in cell apoptosis. However, it is not known yet whether miR-141-3p contributes to the regulation of cardiomyocyte apoptosis. It has been well established that in vitro hypoxia/reoxygenation (H/R) model can follow in vivo myocardial I/R injury. This study aimed to investigate the effects of miR-141-3p and CHD8 on cardiomyocyte apoptosis following H/R. Results: We found that H/R remarkably reduces the expression of miR-141-3p but enhances CHD8 expression both in mRNA and protein in H9c2 cardiomyocytes. We also found either overexpression of miR-141-3p by transfection of miR-141-3p mimics or inhibition of CHD8 by transfection of small interfering RNA (siRNA) significantly decrease cardiomyocyte apoptosis induced by H/R. Moreover, miR-141-3p interacts with CHD8. Furthermore, miR-141-3p and CHD8 reduce the expression of p21. Conclusion: MiR-141-3p and CHD8 play critical roles in cardiomyocyte apoptosis induced by H/R. These studies suggest that miR-141-3p and CHD8 mediated cardiomyocyte apoptosis may offer a novel therapeutic strategy against myocardial I/R injury-induced cardiovascular diseases

Genome-wide analysis of regulatory proteases sequences identified through bioinformatics data mining in Taenia solium

Background Cysticercosis remains a major neglected tropical disease of humanity in many regions, especially in sub-Saharan Africa, Central America and elsewhere. Owing to the emerging drug resistance and the inability of current drugs to prevent re-infection, identification of novel vaccines and chemotherapeutic agents against Taenia solium and related helminth pathogens is a public health priority. The T. solium genome and the predicted proteome were reported recently, providing a wealth of information from which new interventional targets might be identified. In order to characterize and classify the entire repertoire of protease-encoding genes of T. solium, which act fundamental biological roles in all life processes, we analyzed the predicted proteins of this cestode through a combination of bioinformatics tools. Functional annotation was performed to yield insights into the signaling processes relevant to the complex developmental cycle of this tapeworm and to highlight a suite of the proteases as potential intervention targets. Results Within the genome of this helminth parasite, we identified 200 open reading frames encoding proteases from five clans, which correspond to 1.68% of the 11,902 protein-encoding genes predicted to be present in its genome. These proteases include calpains, cytosolic, mitochondrial signal peptidases, ubiquitylation related proteins, and others. Many not only show significant similarity to proteases in the Conserved Domain Database but have conserved active sites and catalytic domains. KEGG Automatic Annotation Server (KAAS) analysis indicated that ~60% of these proteases share strong sequence identities with proteins of the KEGG database, which are involved in human disease, metabolic pathways, genetic information processes, cellular processes, environmental information processes and organismal systems. Also, we identified signal peptides and transmembrane helices through comparative analysis with classes of important regulatory proteases. Phylogenetic analysis using Bayes approach provided support for inferring functional divergence among regulatory cysteine and serine proteases. Conclusion Numerous putative proteases were identified for the first time in T. solium, and important regulatory proteases have been predicted. This comprehensive analysis not only complements the growing knowledge base of proteolytic enzymes, but also provides a platform from which to expand knowledge of cestode proteases and to explore their biochemistry and potential as intervention targets

Generation of high-density high-polarization positrons via single-shot strong laser-foil interaction

We put forward a novel method for producing ultrarelativistic high-density high-polarization positrons through a single-shot interaction of a strong laser with a tilted solid foil. In our method, the driving laser ionizes the target, and the emitted electrons are accelerated and subsequently generate abundant $\gamma$ photons via the nonlinear Compton scattering, dominated by the laser. These $\gamma$ photons then generate polarized positrons via the nonlinear Breit-Wheeler process, dominated by a strong self-generated quasi-static magnetic field $\mathbf{B}^{\rm S}$. We find that placing the foil at an appropriate angle can result in a directional orientation of $\mathbf{B}^{\rm S}$, thereby polarizing positrons. Manipulating the laser polarization direction can control the angle between the $\gamma$ photon polarization and $\mathbf{B}^{\rm S}$, significantly enhancing the positron polarization degree. Our spin-resolved quantum electrodynamics particle-in-cell simulations demonstrate that employing a laser with a peak intensity of about $10^{23}$ W/cm$^2$ can obtain dense ($\gtrsim$ 10$^{18}$ cm$^{-3}$) polarized positrons with an average polarization degree of about 70\% and a yield of above 0.1 nC per shot. Moreover, our method is feasible using currently available or upcoming laser facilities and robust with respect to the laser and target parameters. Such high-density high-polarization positrons hold great significance in laboratory astrophysics, high-energy physics and new physics beyond the Standard Model

Rapid and Visual Detection of Trichinella Spp. Using a Lateral Flow Strip-Based Recombinase Polymerase Amplification (LF-RPA) Assay

Trichinella spp., are amongst the most widespread parasitic nematodes, primarily live in the muscles of a wide range of vertebrate animals and humans. Human infection occurs by ingestion of raw or undercooked meat containing Trichinella larvae. Accurate diagnosis of Trichinella spp. infection in domestic animals is crucial for the effective prevention and control of human trichinellosis. In the present study, a simple, rapid and accurate diagnostic assay was developed combining recombinase polymerase amplification and a lateral flow strip (LF-RPA) to detect Trichinella spp. infection. The LF-RPA assay targets Trichinella spp. mitochondrial small-subunit ribosomal RNA (rrnS) gene and can detect as low as 100 fg DNA of Trichinella strains, which was approximately 10 times more sensitive than a conventional PCR assay. The LF-RPA assay can be performed within 10–25 min, at a wide range of temperatures (25–45°C) and showed no cross-reactivity with DNA of other parasites and related host species of Trichinella. The performance of the LF-RPA assay in the presence of high concentration of PCR inhibitor was better than that of a conventional PCR assay. Results obtained by LF-RPA assay for the detection of experimentally infected mice were comparable to the results obtained by using a conventional PCR, achieving 100% specificity and high sensitivity. These results present the developed LF-RPA assay as a new simple, specific, sensitive, rapid and convenient method for the detection of Trichinella infection in domestic animals

Epileptic prediction using spatiotemporal information combined with optimal features strategy on EEG

ObjectiveEpilepsy is the second most common brain neurological disease after stroke, which has the characteristics of sudden and recurrence. Seizure prediction is seriously important for improving the quality of patients’ lives.MethodsFrom the perspective of multiple dimensions including time-frequency, entropy and brain network, this paper proposed a novel approach by constructing the optimal spatiotemporal feature set to predict seizures. Based on strong independence and large information capabilities, the two-dimensional feature screening algorithm is performed to eliminate unnecessary redundant features. In order to verify the effectiveness of the optimal feature set, support vector machine (SVM) was used to classify the preictal and interictal states on both the Kaggle intracranial EEG and CHB-MIT scalp EEG dataset.ResultsThis model achieved an average accuracy of 98.01%, AUC of 0.96, F-Score of 98.3% and FPR of 0.0383/h on the Kaggle dataset; On the CHB-MIT dataset, the average accuracy, AUC, F-score and FPR were 95.93%, 0.92, 94.97% and 0.0473/h, respectively. Further ablation experiments have confirmed that the temporal and spatial features fusion has better performance than the individual temporal or spatial features.ConclusionCompared to the state-of-the-art methods, our approach outperforms most of these existing techniques. The results show that our approach can effectively extract the spatiotemporal information of epileptic EEG signals to predict epileptic seizures with high performance